mRNA_L-elsbetiae_contig7863.16815.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7863.16815.1
Unique NamemRNA_L-elsbetiae_contig7863.16815.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7863.16815.1 vs. uniprot
Match: A0A6H5LFG5_9PHAE (Ribonuclease Z n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFG5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 9.930e-15
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   22 PSMTLHGPPGLLEFFRATRHFMHPGDFSLAFEAVETASTLRHSEMNVSQVPITKAKH 192
            P+ TLHGPPGL EF+ ATRHF+H  DF + FEAVE  +T RHSEM++ Q+PI + ++
Sbjct:  126 PAFTLHGPPGLSEFYHATRHFIHRADFPVGFEAVEEETTFRHSEMSIRQIPIKRQQN 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7863.16815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LFG5_9PHAE9.930e-1557.89Ribonuclease Z n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7863contigL-elsbetiae_contig7863:2323..3859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7863.16815.1prot_L-elsbetiae_contig7863.16815.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7863 2323..3832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.9236062-CDS-L-elsbetiae_contig7863:2322..24481622816869.9236062-CDS-L-elsbetiae_contig7863:2322..2448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7863 2323..2448 -
1691683874.9883528-CDS-L-elsbetiae_contig7863:2322..24481691683874.9883528-CDS-L-elsbetiae_contig7863:2322..2448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7863 2323..2448 -
1622816869.939114-CDS-L-elsbetiae_contig7863:3733..38321622816869.939114-CDS-L-elsbetiae_contig7863:3733..3832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7863 3734..3832 -
1691683875.0044475-CDS-L-elsbetiae_contig7863:3733..38321691683875.0044475-CDS-L-elsbetiae_contig7863:3733..3832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7863 3734..3832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.9570627-UTR-L-elsbetiae_contig7863:3832..38591622816869.9570627-UTR-L-elsbetiae_contig7863:3832..3859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7863 3833..3859 -
1691683875.017961-UTR-L-elsbetiae_contig7863:3832..38591691683875.017961-UTR-L-elsbetiae_contig7863:3832..3859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7863 3833..3859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7863.16815.1

>prot_L-elsbetiae_contig7863.16815.1 ID=prot_L-elsbetiae_contig7863.16815.1|Name=mRNA_L-elsbetiae_contig7863.16815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MTLHGPPGLLEFFRATRHFMHPGDFSLAFEAVETASTLRHSEMNVSQVPI
TKAKHPAVENKARSGGPAECGVPAS
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mRNA from alignment at L-elsbetiae_contig7863:2323..3859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7863.16815.1 ID=mRNA_L-elsbetiae_contig7863.16815.1|Name=mRNA_L-elsbetiae_contig7863.16815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1537bp|location=Sequence derived from alignment at L-elsbetiae_contig7863:2323..3859- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCGGCGGCGGTTCCGCCGCCGTCGATGACGCTTCACGGGCCGCCGGG
GCTGTTGGAGTTCTTCAGGGCAACGCGGCACTTCATGCATCCGGGCGACT
TCTCGCTGGCTTTCGAGGCAGTCGAGGTGGGTGTGGTTTTTGTCAATATC
AAGATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTACCGATATCTCTCCCTCTCGCGTGTGTGTGTGTTTGTGTTTTAAGTGC
GTGTTGAGAGAGAGAGAAACTTCTTGAAAGAGAATCAGGAATTCTTTGAA
TCGTCTCTGCGGGAGAGTCGACTCTGCGGGAGAATCGCAGCGGTATTTAG
GTTTTGGATAATAATCCTAGAAGTTTACGCAGTTTGGTCGGGCCGAGAAG
GAAAGCACCTCAAATGCTACATAAAAAAATAGGTATGCACAACGCCGATC
GATGTACATACATAGGTACACATGTACGCACAACATACATGTGTAGTACC
AACCATATATACATCTCGCAACTCTGCCGAGTATGTAACCAAACATAAGA
CTTACATCAAAAACATGTGTATTTAAAAGTCGCAACTTTTGCCGAGTATG
TAACCAAACATAAAACTTACATCCAAGTCATGTGTATTTAAAAGTCGCAA
CTCTGCCGAGTATGTAACCAAACATAAAACTTACATCCATATCGTATTTA
AAATGTACTATATTTTTTTATTTTTTGCTTCCGTACGCAGACTGCCGTCT
AGATGGTAGGCGTGCCGTTTTGCCGACGGGCGCTATTTTAGGCTTTTCAG
GGGGGCTTCGTGTGTGCAGCTGGAGTGCTTTCGTCGGCGTACCACCGTCT
TGTTGAGCGGCTGTGGCTGACCATTGGCAGCCAGCGACCATCTCCCAGGC
CCTGTCCTGGGGAACACCCCGGCACGCCCGCTTGTCGATTGCTCTCGTTC
GCTCTTACTGTTGTTGTTGCTGCTGCTTGTTGTGGGTTGTTGTTGTTGTT
GTTTGGTTGTTGACATTCCCGTGACAAGTCCCACTGCTGTTGCTGTTCGT
TGTTGGTTGTTGTTGGTTGTTGTTGCTGCTGTGGTGCTGCTGTGGTGGTG
GTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGTT
GTGCCCTCCGCTTTTTTCGGAAACCGCACACCCTGTTCGATCCAATGAAG
CGAAATCACGACGCCCGCCGTCCCTTCCTTGTGGCCGTCCTTGACCGCCG
CCCCGGTATTTTATTCTGCTCCCCCCCCCCCCCCCCCCCCAATAAAACCG
GCCCCCCCTTTGGGGCCCAGCGGGGGGAACGCCCCCCCGGGCCCGCCCCC
CAAGGGGAACCCCCCCCCCCGTTTTTTTTTTTTCCCCCCCCCCCCCCCCC
CCCGAATAAAGACGGCCAGCACTTTGCGGCACAGCGAGATGAACGTCTCC
CAGGTCCCGATCACCAAGGCGAAGCACCCCGCCGTTGAGAACAAGGCGAG
GAGCGGGGGGCCCGCAGAATGCGGCGTCCCGGCCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7863:2323..3859-

>mRNA_L-elsbetiae_contig7863.16815.1 ID=mRNA_L-elsbetiae_contig7863.16815.1|Name=mRNA_L-elsbetiae_contig7863.16815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig7863:2323..3859- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCTTCACGGGCCGCCGGGGCTGTTGGAGTTCTTCAGGGCAACGCG
GCACTTCATGCATCCGGGCGACTTCTCGCTGGCTTTCGAGGCAGTCGAGA
TGACGCTTCACGGGCCGCCGGGGCTGTTGGAGTTCTTCAGGGCAACGCGG
CACTTCATGCATCCGGGCGACTTCTCGCTGGCTTTCGAGGCAGTCGAGAC
GGCCAGCACTTTGCGGCACAGCGAGATGAACGTCTCCCAGGTCCCGATCA
CCAAGGCGAAGCACCCCGCCGTTGAGAACAAGGCGAGGAGCGGGGGGCCC
GCAGAATGCGGCGTCCCGGCCTCGACGGCCAGCACTTTGCGGCACAGCGA
GATGAACGTCTCCCAGGTCCCGATCACCAAGGCGAAGCACCCCGCCGTTG
AGAACAAGGCGAGGAGCGGGGGGCCCGCAGAATGCGGCGTCCCGGCCTCG
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