mRNA_L-elsbetiae_contig7840.16801.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7840.16801.1
Unique NamemRNA_L-elsbetiae_contig7840.16801.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7840.16801.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.280e-8
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   52 MTKKCGHPGCFKRSSYGIDGSKEPELCPGHAVNGMV 159
            ++K+CGHPGC KR SYG DGSK+ ELC  HA+ GMV
Sbjct:    5 VSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7840.16801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI8.280e-866.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7840contigL-elsbetiae_contig7840:5379..5868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-21_001380.1
Exons1
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.5696132-CDS-L-elsbetiae_contig7840:5378..58671622816868.5696132-CDS-L-elsbetiae_contig7840:5378..5867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7840 5379..5867 +
1691683873.9523256-CDS-L-elsbetiae_contig7840:5378..58671691683873.9523256-CDS-L-elsbetiae_contig7840:5378..5867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7840 5379..5867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7840.16801.1prot_L-elsbetiae_contig7840.16801.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7840 5379..5867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7840.16801.1

>prot_L-elsbetiae_contig7840.16801.1 ID=prot_L-elsbetiae_contig7840.16801.1|Name=mRNA_L-elsbetiae_contig7840.16801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
EEYCRVSKRFENTRRVRMTKKCGHPGCFKRSSYGIDGSKEPELCPGHAVN
GMVSVKQQRRCAHPDCTKQPSHGTEGSGKSEFCAGHAKAGMINISTKRCD
HLGCRKYPSFGMPGSGKRETCAEHTREGMVNVARVKKCGGAGCSTRASFG
AAGSKKVEFCAKH
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mRNA from alignment at L-elsbetiae_contig7840:5379..5868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7840.16801.1 ID=mRNA_L-elsbetiae_contig7840.16801.1|Name=mRNA_L-elsbetiae_contig7840.16801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig7840:5379..5868+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGTATTGCAGAGTATCGAAGCGTTTCGAAAATACTCGAAGAGTAAG
GATGACAAAAAAGTGTGGCCACCCGGGTTGCTTCAAACGCTCCAGCTACG
GCATCGACGGGAGCAAAGAGCCGGAACTCTGCCCTGGACACGCAGTGAAC
GGCATGGTCAGCGTCAAGCAGCAGAGGAGGTGCGCCCACCCAGACTGCAC
GAAGCAACCGAGCCACGGCACGGAGGGAAGCGGGAAATCGGAATTTTGTG
CCGGGCATGCCAAGGCAGGCATGATTAACATTTCCACCAAGAGGTGCGAT
CACCTCGGTTGCCGAAAGTACCCGTCGTTCGGCATGCCAGGCAGCGGCAA
GAGAGAGACGTGCGCCGAGCACACCCGGGAGGGTATGGTGAACGTCGCTC
GTGTCAAGAAATGCGGGGGTGCAGGGTGCAGCACACGAGCGAGTTTTGGG
GCGGCCGGCAGTAAGAAAGTGGAGTTCTGCGCCAAGCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7840:5379..5868+

>mRNA_L-elsbetiae_contig7840.16801.1 ID=mRNA_L-elsbetiae_contig7840.16801.1|Name=mRNA_L-elsbetiae_contig7840.16801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig7840:5379..5868+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGTATTGCAGAGTATCGAAGCGTTTCGAAAATACTCGAAGAGTAAG
GATGACAAAAAAGTGTGGCCACCCGGGTTGCTTCAAACGCTCCAGCTACG
GCATCGACGGGAGCAAAGAGCCGGAACTCTGCCCTGGACACGCAGTGAAC
GGCATGGTCAGCGTCAAGCAGCAGAGGAGGTGCGCCCACCCAGACTGCAC
GAAGCAACCGAGCCACGGCACGGAGGGAAGCGGGAAATCGGAATTTTGTG
CCGGGCATGCCAAGGCAGGCATGATTAACATTTCCACCAAGAGGTGCGAT
CACCTCGGTTGCCGAAAGTACCCGTCGTTCGGCATGCCAGGCAGCGGCAA
GAGAGAGACGTGCGCCGAGCACACCCGGGAGGGTATGGTGAACGTCGCTC
GTGTCAAGAAATGCGGGGGTGCAGGGTGCAGCACACGAGCGAGTTTTGGG
GCGGCCGGCAGTAAGAAAGTGGAGTTCTGCGCCAAGCACGAAGAGTATTG
CAGAGTATCGAAGCGTTTCGAAAATACTCGAAGAGTAAGGATGACAAAAA
AGTGTGGCCACCCGGGTTGCTTCAAACGCTCCAGCTACGGCATCGACGGG
AGCAAAGAGCCGGAACTCTGCCCTGGACACGCAGTGAACGGCATGGTCAG
CGTCAAGCAGCAGAGGAGGTGCGCCCACCCAGACTGCACGAAGCAACCGA
GCCACGGCACGGAGGGAAGCGGGAAATCGGAATTTTGTGCCGGGCATGCC
AAGGCAGGCATGATTAACATTTCCACCAAGAGGTGCGATCACCTCGGTTG
CCGAAAGTACCCGTCGTTCGGCATGCCAGGCAGCGGCAAGAGAGAGACGT
GCGCCGAGCACACCCGGGAGGGTATGGTGAACGTCGCTCGTGTCAAGAAA
TGCGGGGGTGCAGGGTGCAGCACACGAGCGAGTTTTGGGGCGGCCGGCAG
TAAGAAAGTGGAGTTCTGCGCCAAGCAC
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