mRNA_L-elsbetiae_contig7836.16794.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7836.16794.1
Unique NamemRNA_L-elsbetiae_contig7836.16794.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7836.16794.1 vs. uniprot
Match: A0A6H5KJB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-12
Identity = 55/128 (42.97%), Postives = 64/128 (50.00%), Query Frame = 1 
Query:  280 ADSSGYLNHSYATGGGLAPSLSPQQAHGNSEGGAA-LSSADADGIDLTLSY-----------GSPAAVGXXXXXXXXXXXXXKKSL-SKTARSIWASRGGVPPCLELFPSNSNSHDGVLASVGESSGD 624
            AD+  Y    YA GGGL  S     AH  +   A  LSS D DGIDL + Y           G+PAA               K  +  ++AR  WASRGGVPP LEL PS+S+ HDG LA V ESS D
Sbjct:  266 ADNGSY----YAGGGGLQSSSLQAHAHAAAAVAAGGLSSFDTDGIDLAVGYADTAAAIDSRSGNPAAAAAAAGCDDHRGGPKKPLVRGRSARRFWASRGGVPPRLELLPSHSHGHDGALADVDESSAD 389
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BLAST of mRNA_L-elsbetiae_contig7836.16794.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.890e-12
Identity = 61/121 (50.41%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:  313 ATGGGLAPSLSPQQAHGNSEGGAALSSADADGIDLTLSYGSPAAV---------------GXXXXXXXXXXXXXKKSL--SKTARSIWASRGGVPPCLELFPSNSNSHDGVLASVGESSGD 624
            A GGGL    S  QAH ++   A LSS D DGIDL + Y   AA                 XXXXXXXXX    KK L   ++AR  WASRGGVPP LEL PS+S+ HDG LA V ESS D
Sbjct: 2720 ARGGGL--QSSSLQAHAHAAAAAGLSSFDTDGIDLAVGYADTAAAIDSRSGNPAXXXXXXXXXXXXXXXXRGGPKKPLVRGRSARRFWASRGGVPPRLELLPSHSHGHDGALADVDESSAD 2838
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7836.16794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJB8_9PHAE1.040e-1242.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K0_ECTSI5.890e-1250.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7836contigL-elsbetiae_contig7836:5321..6029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size709
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.1613283-CDS-L-elsbetiae_contig7836:5320..60281622816868.1613283-CDS-L-elsbetiae_contig7836:5320..6028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7836 5321..6028 +
1691683873.7257168-CDS-L-elsbetiae_contig7836:5320..60281691683873.7257168-CDS-L-elsbetiae_contig7836:5320..6028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7836 5321..6028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7836.16794.1prot_L-elsbetiae_contig7836.16794.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7836 5321..6028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7836.16794.1

>prot_L-elsbetiae_contig7836.16794.1 ID=prot_L-elsbetiae_contig7836.16794.1|Name=mRNA_L-elsbetiae_contig7836.16794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
ERSLPSRDADVAVAGTAAGDGWAAAEREGGRSSSVGVLHSSGGGGGGGFD
SGAARGVVIIDSSSSGDSDVSDDDSRFGFIGDFDGGGGGGGSHADSSGYL
NHSYATGGGLAPSLSPQQAHGNSEGGAALSSADADGIDLTLSYGSPAAVG
GGGGGGGGGDPDPKKSLSKTARSIWASRGGVPPCLELFPSNSNSHDGVLA
SVGESSGDDEEGKESGGGGGGGGPVGRKTSVSSPKA
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mRNA from alignment at L-elsbetiae_contig7836:5321..6029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7836.16794.1 ID=mRNA_L-elsbetiae_contig7836.16794.1|Name=mRNA_L-elsbetiae_contig7836.16794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=709bp|location=Sequence derived from alignment at L-elsbetiae_contig7836:5321..6029+ (Laminarionema elsbetiae ELsaHSoW15)
GAAAGAAGCCTGCCGTCGAGAGACGCCGATGTGGCGGTGGCGGGCACGGC
GGCTGGTGACGGCTGGGCCGCCGCCGAACGGGAGGGAGGTCGGTCATCGT
CAGTCGGCGTACTCCACAGCAGCGGTGGCGGCGGCGGCGGCGGGTTTGAT
TCTGGTGCGGCGCGCGGCGTTGTGATCATCGACAGTTCGAGCAGCGGCGA
TAGCGATGTGAGCGACGACGACAGCCGGTTTGGTTTCATCGGCGACTTTG
ACGGTGGTGGTGGTGGCGGCGGCAGCCACGCCGATAGCAGCGGGTACTTA
AACCACAGCTACGCCACTGGAGGCGGCCTAGCGCCGTCGCTGTCACCGCA
GCAGGCACACGGCAACAGCGAAGGTGGCGCCGCGCTGTCTTCCGCCGACG
CGGACGGTATCGACCTCACACTGAGCTACGGGTCCCCCGCCGCTGTCGGC
GGCGGCGGCGGCGGCGGCGGTGGCGGCGACCCGGACCCGAAGAAATCTCT
GTCGAAGACGGCGAGGAGCATCTGGGCGTCCCGCGGGGGAGTGCCGCCTT
GTCTGGAGCTCTTCCCGAGCAACAGCAACAGCCACGACGGCGTGCTCGCG
AGCGTCGGCGAGAGCTCTGGAGACGACGAGGAGGGCAAGGAGAGCGGCGG
CGGCGGCGGTGGCGGCGGCCCGGTCGGTCGAAAGACGAGCGTCTCTTCGC
CAAAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7836:5321..6029+

>mRNA_L-elsbetiae_contig7836.16794.1 ID=mRNA_L-elsbetiae_contig7836.16794.1|Name=mRNA_L-elsbetiae_contig7836.16794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig7836:5321..6029+ (Laminarionema elsbetiae ELsaHSoW15)
GAAAGAAGCCTGCCGTCGAGAGACGCCGATGTGGCGGTGGCGGGCACGGC
GGCTGGTGACGGCTGGGCCGCCGCCGAACGGGAGGGAGGTCGGTCATCGT
CAGTCGGCGTACTCCACAGCAGCGGTGGCGGCGGCGGCGGCGGGTTTGAT
TCTGGTGCGGCGCGCGGCGTTGTGATCATCGACAGTTCGAGCAGCGGCGA
TAGCGATGTGAGCGACGACGACAGCCGGTTTGGTTTCATCGGCGACTTTG
ACGGTGGTGGTGGTGGCGGCGGCAGCCACGCCGATAGCAGCGGGTACTTA
AACCACAGCTACGCCACTGGAGGCGGCCTAGCGCCGTCGCTGTCACCGCA
GCAGGCACACGGCAACAGCGAAGGTGGCGCCGCGCTGTCTTCCGCCGACG
CGGACGGTATCGACCTCACACTGAGCTACGGGTCCCCCGCCGCTGTCGGC
GGCGGCGGCGGCGGCGGCGGTGGCGGCGACCCGGACCCGAAGAAATCTCT
GTCGAAGACGGCGAGGAGCATCTGGGCGTCCCGCGGGGGAGTGCCGCCTT
GTCTGGAGCTCTTCCCGAGCAACAGCAACAGCCACGACGGCGTGCTCGCG
AGCGTCGGCGAGAGCTCTGGAGACGACGAGGAGGGCAAGGAGAGCGGCGG
CGGCGGCGGTGGCGGCGGCCCGGTCGGTCGAAAGACGAGCGTCTCTTCGC
CAAAGGCGGAAAGAAGCCTGCCGTCGAGAGACGCCGATGTGGCGGTGGCG
GGCACGGCGGCTGGTGACGGCTGGGCCGCCGCCGAACGGGAGGGAGGTCG
GTCATCGTCAGTCGGCGTACTCCACAGCAGCGGTGGCGGCGGCGGCGGCG
GGTTTGATTCTGGTGCGGCGCGCGGCGTTGTGATCATCGACAGTTCGAGC
AGCGGCGATAGCGATGTGAGCGACGACGACAGCCGGTTTGGTTTCATCGG
CGACTTTGACGGTGGTGGTGGTGGCGGCGGCAGCCACGCCGATAGCAGCG
GGTACTTAAACCACAGCTACGCCACTGGAGGCGGCCTAGCGCCGTCGCTG
TCACCGCAGCAGGCACACGGCAACAGCGAAGGTGGCGCCGCGCTGTCTTC
CGCCGACGCGGACGGTATCGACCTCACACTGAGCTACGGGTCCCCCGCCG
CTGTCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGACCCGGACCCGAAG
AAATCTCTGTCGAAGACGGCGAGGAGCATCTGGGCGTCCCGCGGGGGAGT
GCCGCCTTGTCTGGAGCTCTTCCCGAGCAACAGCAACAGCCACGACGGCG
TGCTCGCGAGCGTCGGCGAGAGCTCTGGAGACGACGAGGAGGGCAAGGAG
AGCGGCGGCGGCGGCGGTGGCGGCGGCCCGGTCGGTCGAAAGACGAGCGT
CTCTTCGCCAAAGGCG
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