mRNA_L-elsbetiae_contig7832.16792.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7832.16792.1
Unique NamemRNA_L-elsbetiae_contig7832.16792.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7832.16792.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 3.290e-67
Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 2 
Query:  383 MVNFSNQSPFLQDDGSHNPEALCSTHERSLALVKTVMQIDIVLAAVVVLSLVGRDHQGVETHEEKVQLVLQVVTCSVFLAAITHCVVLLVCTGWRYTLTWYDPLFPTAFSALGTVLLYITLASAILVRLRPTGEDLDTAGYWSTVMFALNLPLALAGPLVTIQMVLHKFSSVN 901
            MV FS  SPFLQDDG   P A+CS H RSL L+K ++Q+D +LA  +VLS+VG++H+ +   EEKVQ+VLQVVT SVFLAAI H VVL+VCTGWRYTL WYDPLFP  FSA+G  LLY+T+A AIL+RLRP  EDL T GYW  ++F L  P+ALAGP  T+QM+LHKF   N
Sbjct:    1 MVKFSEDSPFLQDDGDGQPSAICSQHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQ-EDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDN 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7832.16792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD8_ECTSI3.290e-6763.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7832contigL-elsbetiae_contig7832:4146..7295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size902
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7832.16792.1prot_L-elsbetiae_contig7832.16792.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7832 4146..6327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.9769933-CDS-L-elsbetiae_contig7832:4145..44631622816867.9769933-CDS-L-elsbetiae_contig7832:4145..4463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7832 4146..4463 -
1691683873.5847301-CDS-L-elsbetiae_contig7832:4145..44631691683873.5847301-CDS-L-elsbetiae_contig7832:4145..4463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7832 4146..4463 -
1622816867.9890313-CDS-L-elsbetiae_contig7832:5469..55561622816867.9890313-CDS-L-elsbetiae_contig7832:5469..5556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7832 5470..5556 -
1691683873.5986495-CDS-L-elsbetiae_contig7832:5469..55561691683873.5986495-CDS-L-elsbetiae_contig7832:5469..5556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7832 5470..5556 -
1622816868.0002713-CDS-L-elsbetiae_contig7832:6213..63271622816868.0002713-CDS-L-elsbetiae_contig7832:6213..6327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7832 6214..6327 -
1691683873.6087756-CDS-L-elsbetiae_contig7832:6213..63271691683873.6087756-CDS-L-elsbetiae_contig7832:6213..6327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7832 6214..6327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.0101073-UTR-L-elsbetiae_contig7832:6327..63951622816868.0101073-UTR-L-elsbetiae_contig7832:6327..6395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7832 6328..6395 -
1691683873.618447-UTR-L-elsbetiae_contig7832:6327..63951691683873.618447-UTR-L-elsbetiae_contig7832:6327..6395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7832 6328..6395 -
1622816868.0240207-UTR-L-elsbetiae_contig7832:6981..72951622816868.0240207-UTR-L-elsbetiae_contig7832:6981..7295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7832 6982..7295 -
1691683873.627977-UTR-L-elsbetiae_contig7832:6981..72951691683873.627977-UTR-L-elsbetiae_contig7832:6981..7295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7832 6982..7295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7832.16792.1

>prot_L-elsbetiae_contig7832.16792.1 ID=prot_L-elsbetiae_contig7832.16792.1|Name=mRNA_L-elsbetiae_contig7832.16792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MVNFSNQSPFLQDDGSHNPEALCSTHERSLALVKTVMQIDIVLAAVVVLS
LVGRDHQGVETHEEKVQLVLQVVTCSVFLAAITHCVVLLVCTGWRYTLTW
YDPLFPTAFSALGTVLLYITLASAILVRLRPTGEDLDTAGYWSTVMFALN
LPLALAGPLVTIQMVLHKFSSVN
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mRNA from alignment at L-elsbetiae_contig7832:4146..7295-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7832.16792.1 ID=mRNA_L-elsbetiae_contig7832.16792.1|Name=mRNA_L-elsbetiae_contig7832.16792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3150bp|location=Sequence derived from alignment at L-elsbetiae_contig7832:4146..7295- (Laminarionema elsbetiae ELsaHSoW15)
ATCTCGCCAAACGAGAAAGCGAGAGGAGGCAAGTACACTGTGCGTGTTTG
TGGTCCTCCTCACGCCAAGCTTGAAACTCTGGCTGTTGGCCGGTGCTGGT
TCCTGCCCCTCCCCCTCACCTGCCCTTGTCGGCCTCTCTGATTCGTTCCC
AAATCAACTCGCAATTCAGAATTGCAATTTTGCAGCAGCGACGAGGTGGG
GCACGTGTGCGTGGAGAGAGCGACACGGTTGCAAAGCGGCAGCCGTACGG
AAGGGGAAGCGAAATAATCCCTCGTCTCCGGGCTGAAGGCTGCCCGGGGG
ATAGATACATCAGGGTGAGAGCTCACTACGCTGGGAAAAGCCGCAATCGA
GTTTCGCACCCTTGGGTATATCCCTCCGCTCTTGGCTCGCTTGGGGCGAG
ATGAGAGAGCATCGAAAGAAGGTTTTGCCACATCTAACTTACCGGCAGCC
TCGTTTTCGAAGTATGGAGGTCTTGAGCTCGATAGGAAGAATGTCTCGTG
AGCACATCAGCAGTTGTCAATGTTGCATTTTGGTGCATGCATGCACGTAC
ACCAGCAGCAGCAGCAGCAGTATTCCATCCGCTTCCTTGATCGACTATTA
TTTGCCCCGCGTCCCAAGTCCCAACGCCCCGCTACATCATGTTTTTGTTT
TTTGTGAGTTACGACGGTTGTGTCTCGTAGCTATGTCATTGAATGCCTGC
TTTTTAGACCATGTACAATTTCTAAATGCACTCTATTGTCCGGTTAATTT
TAGTCTTCTTCGTCTCTGGCCATTCGATAAAAATTCTAAACTGTTGTAAT
CCCGCCGCGTTTTTTGTGGAGCGTTTTTGGAGCAAACACGTTTGTAGGAA
TATACATACGTGCATGCCTCACCAACACTCTTGTTCGATTCTGGAGCCAG
GAACTGGATATCAGCCAACGAGCCAAGAGCACGAACAGTCGATCTTTGTT
GCTTCGGCGGCGGCAGGCATGGTGAACTTCTCGAATCAGAGCCCCTTCCT
TCAGGACGATGGCAGCCACAACCCCGAGGCCCTCTGCAGCACGCATGAGA
GAAGTTTAGCACTTGTCAAGACCGTCATGCAGGTATGCATGTACAGATAC
ACTATCTAGTAGACTATCTATGTACCGTAGGTGACACAAGGTACCCACCG
TCCCCCCCCCTGGCTTGATTTTCAAAGCTCGATTTCTCCCCAGCAAGAAG
AGTGCCAGTGCCGAAAGGGGGGTGGCGTTGGAAAGATCTAGTCGAGGGCG
GTCCGAAAATGTGTCGTTTGGTGCTAGCCCCCTCTTCGTTACAAAGTATT
CGAGCTTTGAAAGTCTGTCCAGGGGGGGTGGTATCTTGTGTCGTCTACGG
TACACATGTAGGCCCAATTAGTGTACAGGTAGGGCCAACCTGGAGGGAGG
CCGTAGTACTGGGCAGTGTCCACTCGTTACAAGAAAGAAGCCAACCCCCC
TTATTTAGCTTCGGATGATGTAAATCCCTGTTCTCTCAAACATGCCTCAT
CGTGGCCATCTTGGTGGTCTGTAGATGCATCACCAATCAAACATAAAAAG
AGGCCAACACCCGACAGACACACACACGCACACTTGAGAAGAATCTGTCG
TCGTCGACACCATCAAATGCTCCAATTAATCTTCCGCTCTGAATATAAAT
ATCTCACCCTTCATTTTTTTTGTAATATTTTCCTTACGGATACCCACACG
TTCAATGTTTTGTATTTGTTTTCTGCCCCTTCCTCGCAGATCGATATCGT
TCTTGCAGCAGTCGTCGTCCTCTCACTGGTCGGAAGAGATCACCAAGGAG
TCGAAACGCACGAAGAAAAGGTTCAGGTGAGACGAAAGCGTCCCTTTGTC
GAATCATGTCGGGGCGGCCACAAACACCTACCGTAGGTGACACAAGATAC
CACACCCCCTGGGCCGAATTTTAGAGCTCCATTACTCCGTAACGAAGAAG
GTGCCAGCACCAAACGACACATCTTCGGACAGCCCTCGCCCGGATCTTTC
CAACGCACCCCCTTTCGGCTCTGGCACTCATCTTGCTTGGGAGGAATCGA
GGTTTGAAAAACTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAC
CCGGGTCTCTTCGGGCATTTCACAAAACCCGGCCGGCAGAAGCCTGCGAG
ATTCGGAAACTCGGCGTTCTCTTTCACGCTCTCTCTCTCTCTCTCTCTCT
CTCTCGTGGCCCCCAAGACTTCGAGGACGCCCCGTATTTAGTGAGCACCC
CTTGCACGGCAGAATGGTGAATGGTGCAGACTTTAGTTTGTTCTTCGTTC
TCCGGTGAAAGTTATAAGCGAGCGGTACCGGTTTGTGGTCGCCGTCGGGG
AGACTGCACAATAGTAGTTTGTTTGGCGGACGAATGCGCAACGCGTCTGT
CTGTCTTCAGAATCACTCAAAGGGCACACGCTTTGCCTTTCAGGAGCAGG
CCAGCCGGTGAGAAACCTTCGGAGCGGTCGCGGTACGTACGGGCTTGGTG
CAGCTGGGTAGTCCCACGGCGTCTTATTTTTCCCCTCCTCCCTCCATCCA
CCCTCGCCCGGGCTACATTTGAAGCTGCTGTCGTAAACCAAACCATGTAG
TGCCCGACCTTCCCAAAACACCTGCCTGCTGACGCGCGGATGGCGCTCCA
CTAAACAAGCACAAACGAACGAAGCCTTCAGCCCTCGCCTTCGCCTTCAC
CCCCCCCCCCAAATATGCCAATAATGGGAGGAAAAAAAACAAAATTGTCC
CATCGCATTTTCCACCCTCAAGCACACCACCGCGCGTTCCACCCCCTCAC
CGCCACCGCCCGTCATCACACGACGACCACAGTTAGTCCTGCAGGTGGTG
ACCTGTTCCGTGTTTCTCGCGGCCATCACGCACTGCGTGGTGCTCCTGGT
GTGCACCGGGTGGAGGTACACCCTCACCTGGTACGACCCCCTGTTTCCGA
CGGCCTTCTCGGCCCTCGGGACGGTCCTCCTGTACATCACCCTGGCGAGC
GCGATCCTCGTCCGGCTGCGCCCCACCGGCGAGGACCTCGACACAGCCGG
GTACTGGTCGACCGTAATGTTTGCACTCAACCTCCCGCTGGCCCTCGCGG
GCCCGCTCGTGACGATCCAGATGGTGCTGCACAAGTTCTCCAGCGTCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7832:4146..7295-

>mRNA_L-elsbetiae_contig7832.16792.1 ID=mRNA_L-elsbetiae_contig7832.16792.1|Name=mRNA_L-elsbetiae_contig7832.16792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig7832:4146..7295- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACTTCTCGAATCAGAGCCCCTTCCTTCAGGACGATGGCAGCCA
CAACCCCGAGGCCCTCTGCAGCACGCATGAGAGAAGTTTAGCACTTGTCA
AGACCGTCATGCAGATGGTGAACTTCTCGAATCAGAGCCCCTTCCTTCAG
GACGATGGCAGCCACAACCCCGAGGCCCTCTGCAGCACGCATGAGAGAAG
TTTAGCACTTGTCAAGACCGTCATGCAGATCGATATCGTTCTTGCAGCAG
TCGTCGTCCTCTCACTGGTCGGAAGAGATCACCAAGGAGTCGAAACGCAC
GAAGAAAAGGTTCAGATCGATATCGTTCTTGCAGCAGTCGTCGTCCTCTC
ACTGGTCGGAAGAGATCACCAAGGAGTCGAAACGCACGAAGAAAAGGTTC
AGTTAGTCCTGCAGGTGGTGACCTGTTCCGTGTTTCTCGCGGCCATCACG
CACTGCGTGGTGCTCCTGGTGTGCACCGGGTGGAGGTACACCCTCACCTG
GTACGACCCCCTGTTTCCGACGGCCTTCTCGGCCCTCGGGACGGTCCTCC
TGTACATCACCCTGGCGAGCGCGATCCTCGTCCGGCTGCGCCCCACCGGC
GAGGACCTCGACACAGCCGGGTACTGGTCGACCGTAATGTTTGCACTCAA
CCTCCCGCTGGCCCTCGCGGGCCCGCTCGTGACGATCCAGATGGTGCTGC
ACAAGTTCTCCAGCGTCAACTTAGTCCTGCAGGTGGTGACCTGTTCCGTG
TTTCTCGCGGCCATCACGCACTGCGTGGTGCTCCTGGTGTGCACCGGGTG
GAGGTACACCCTCACCTGGTACGACCCCCTGTTTCCGACGGCCTTCTCGG
CCCTCGGGACGGTCCTCCTGTACATCACCCTGGCGAGCGCGATCCTCGTC
CGGCTGCGCCCCACCGGCGAGGACCTCGACACAGCCGGGTACTGGTCGAC
CGTAATGTTTGCACTCAACCTCCCGCTGGCCCTCGCGGGCCCGCTCGTGA
CGATCCAGATGGTGCTGCACAAGTTCTCCAGCGTCAAC
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