prot_L-elsbetiae_contig7832.16792.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7832.16792.1
Unique Name	prot_L-elsbetiae_contig7832.16792.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	173

Homology

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BLAST of mRNA_L-elsbetiae_contig7832.16792.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.690e-69
Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 0

Query:    1 MVNFSNQSPFLQDDGSHNPEALCSTHERSLALVKTVMQIDIVLAAVVVLSLVGRDHQGVETHEEKVQLVLQVVTCSVFLAAITHCVVLLVCTGWRYTLTWYDPLFPTAFSALGTVLLYITLASAILVRLRPTGEDLDTAGYWSTVMFALNLPLALAGPLVTIQMVLHKFSSVN 173
            MV FS  SPFLQDDG   P A+CS H RSL L+K ++Q+D +LA  +VLS+VG++H+ +   EEKVQ+VLQVVT SVFLAAI H VVL+VCTGWRYTL WYDPLFP  FSA+G  LLY+T+A AIL+RLRP  EDL T GYW  ++F L  P+ALAGP  T+QM+LHKF   N
Sbjct:    1 MVKFSEDSPFLQDDGDGQPSAICSQHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQ-EDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDN 172

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7832.16792.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7832.16792.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FXD8_ECTSI	1.690e-69	63.01	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..34
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..166
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 97..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 72..96
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 108..127
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 53..71
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 167..173
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 128..138
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..52
None	No IPR available	TMHMM	TMhelix		coord: 105..127
None	No IPR available	TMHMM	TMhelix		coord: 30..52
None	No IPR available	TMHMM	TMhelix		coord: 68..90
None	No IPR available	TMHMM	TMhelix		coord: 140..162

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7832	contig	L-elsbetiae_contig7832:4146..6327 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7832.16792.1	mRNA_L-elsbetiae_contig7832.16792.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7832 4146..7295 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7832.16792.1 ID=prot_L-elsbetiae_contig7832.16792.1|Name=mRNA_L-elsbetiae_contig7832.16792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MVNFSNQSPFLQDDGSHNPEALCSTHERSLALVKTVMQIDIVLAAVVVLS
LVGRDHQGVETHEEKVQLVLQVVTCSVFLAAITHCVVLLVCTGWRYTLTW
YDPLFPTAFSALGTVLLYITLASAILVRLRPTGEDLDTAGYWSTVMFALN
LPLALAGPLVTIQMVLHKFSSVN