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Homology
BLAST of mRNA_L-elsbetiae_contig7830.16791.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI) HSP 1 Score: 158 bits (399), Expect = 3.490e-37 Identity = 88/147 (59.86%), Postives = 103/147 (70.07%), Query Frame = 2
Query: 1499 LQCPKRQVGVRTLGEIREPYQAGARQAYLTHSFLPTQVYYTDNCCGDRSFLQETLEPASVAVEDAANSTCFADEDEA-LPLLDFPNGFNVILLTVSGENCEQSARACVELLRRGREGGPAVLGLDIEWSVRPSGPR-QVATLQLSAR 1933
+Q PKRQVGV +LGEI P+ YLT F P QVY+TD CCGD + +Q TL PAS V D A ST FA+E E LP L+FP G + IL+ V+ ENCE S+R C++LLRR R PAVLG DIEWSVRPSGPR QVA +QLSAR
Sbjct: 1 MQRPKRQVGVASLGEIA-PHLKALANRYLTQGFRPIQVYWTDLCCGDGNIIQSTLGPASQHVPDFALSTYFAEEAERQLPNLEFPAGASPILVRVASENCELSSRICLQLLRRARASAPAVLGFDIEWSVRPSGPRRQVALVQLSAR 146
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 159.5 |
Seed ortholog evalue | 2.5e-36 |
Seed eggNOG ortholog | 2880.D7G0J2 |
Preferred name | WRN |
KEGG ko | ko:K10900,ko:K20777 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113 |
EggNOG free text desc. | 3'-5' exonuclease activity |
EggNOG OGs | KOG4373@1,KOG4373@2759 |
EC | 3.1.11.1,3.6.4.12 |
COG Functional cat. | C |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01000,ko03032,ko03400 |
Exons | 6 |
Model size | 2036 |
Cds size | 897 |
Stop | 0 |
Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816867.8674119-CDS-L-elsbetiae_contig7830:1108..1534 | 1622816867.8674119-CDS-L-elsbetiae_contig7830:1108..1534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 1109..1534 - |
1691683873.51407-CDS-L-elsbetiae_contig7830:1108..1534 | 1691683873.51407-CDS-L-elsbetiae_contig7830:1108..1534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 1109..1534 - |
1622816867.8780742-CDS-L-elsbetiae_contig7830:1743..1848 | 1622816867.8780742-CDS-L-elsbetiae_contig7830:1743..1848 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 1744..1848 - |
1691683873.5257857-CDS-L-elsbetiae_contig7830:1743..1848 | 1691683873.5257857-CDS-L-elsbetiae_contig7830:1743..1848 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 1744..1848 - |
1622816867.8948662-CDS-L-elsbetiae_contig7830:2005..2342 | 1622816867.8948662-CDS-L-elsbetiae_contig7830:2005..2342 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 2006..2342 - |
1691683873.5348952-CDS-L-elsbetiae_contig7830:2005..2342 | 1691683873.5348952-CDS-L-elsbetiae_contig7830:2005..2342 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 2006..2342 - |
1622816867.906442-CDS-L-elsbetiae_contig7830:2542..2571 | 1622816867.906442-CDS-L-elsbetiae_contig7830:2542..2571 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 2543..2571 - |
1691683873.5441966-CDS-L-elsbetiae_contig7830:2542..2571 | 1691683873.5441966-CDS-L-elsbetiae_contig7830:2542..2571 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7830 2543..2571 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816867.919511-UTR-L-elsbetiae_contig7830:2571..2902 | 1622816867.919511-UTR-L-elsbetiae_contig7830:2571..2902 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7830 2572..2902 - |
1691683873.553718-UTR-L-elsbetiae_contig7830:2571..2902 | 1691683873.553718-UTR-L-elsbetiae_contig7830:2571..2902 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7830 2572..2902 - |
1622816867.9337823-UTR-L-elsbetiae_contig7830:3216..3650 | 1622816867.9337823-UTR-L-elsbetiae_contig7830:3216..3650 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7830 3217..3650 - |
1691683873.5648537-UTR-L-elsbetiae_contig7830:3216..3650 | 1691683873.5648537-UTR-L-elsbetiae_contig7830:3216..3650 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7830 3217..3650 - |
1622816867.945544-UTR-L-elsbetiae_contig7830:3708..4081 | 1622816867.945544-UTR-L-elsbetiae_contig7830:3708..4081 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7830 3709..4081 - |
1691683873.5746825-UTR-L-elsbetiae_contig7830:3708..4081 | 1691683873.5746825-UTR-L-elsbetiae_contig7830:3708..4081 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7830 3709..4081 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7830.16791.1 >prot_L-elsbetiae_contig7830.16791.1 ID=prot_L-elsbetiae_contig7830.16791.1|Name=mRNA_L-elsbetiae_contig7830.16791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
MKHFMTLQLRYYTCMDRRRRRGQPSLVPEENQRLRHPPRFSPFDDKAGYN GRPPSAPVLQAAFLAVIESREHCYHRQQQLVYGKNLGGDDSHKIVKGIRV MNQKVFHGIHTVLNEWSLVVLQCPKRQVGVRTLGEIREPYQAGARQAYLT HSFLPTQVYYTDNCCGDRSFLQETLEPASVAVEDAANSTCFADEDEALPL LDFPNGFNVILLTVSGENCEQSARACVELLRRGREGGPAVLGLDIEWSVR PSGPRQVATLQLSARSFRCCCCRRRRRRRRKWQQFYGQCRRVRLWGWSG back to topmRNA from alignment at L-elsbetiae_contig7830:1109..4081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7830.16791.1 ID=mRNA_L-elsbetiae_contig7830.16791.1|Name=mRNA_L-elsbetiae_contig7830.16791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2973bp|location=Sequence derived from alignment at L-elsbetiae_contig7830:1109..4081- (Laminarionema elsbetiae ELsaHSoW15) GCGCGGTAGACCGGCGCTCACACCCGACACAGACCTCTCCACGGCTGGAC
GGCTCACAGACTACTGCTTACACACGTGAGGCATGTCATCATCATCGAAA
AAGCCTGTTGGCCGGCCCAAAAACTCGAGCATAAAGAAACCCGATGCGCA
AAAAACCGGACCAAAAGGGCGGCAGCAGCTGAAGCCTTCCCAACGACAGT
CAACGGATGCGCCCTGCAGCAGCGGAGGAGACGGAAGATCAAAGCGAGAG
TGTGCAGCCTGGAAACCTTGCGGTGGGTGCTGAGGTGGCCGGAACAGCAG
GAGAAAAAGGTGGTGTGTTGTCTGCTGCAACACACATGATACACGCGGAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCAGCAACAGCAGCAGAAGCAGAAGCAGCAGCAAA
CGATACCGGCCTCGGCTCACGAGCACCGCCACTAGCACCAACACTAGCGG
CTTCGTGCTAAACCACAGCACCAGCAGCACCACCTCTACTCCGCAGTGCG
GCGGTTTCGTGCGAAGAAACCCAGCAGGATATTGCGCCAGGCCTTGCCAT
GGCCAAGTTCATCGCGGACGTGAAGACAGGGATTGACAGCACCACGACGC
GGCAAGGGCACGGCTCCCAGGAAAAGGGGGTGGAAGGAAAGCTACCTCGC
GGTTCACCATGGGTCTCTCCAGACGACCGATCCCCTGCTTGCAAAAATAC
CGGATCTGGACACCCACTACCTCCAACCTGTTTTCGTCTGCATGTGGGAA
CTGCTTTGCAGCTTCATGGCGGGGCCTCCATGCCCGCGCTGCGCCAAATA
CGAGGATGTACATATGTAAGTATCCTGTCCTCCTGTGGTGGCGTGATAGG
TATCATATTTGCATTTAAATTTTTTCAGCCATGTGGCCTCATGCTGCCGA
TTTTGGGCTGCTGTTGGCTGTGTACATTGCTGCTGTTGCTGTGCCGCCGG
AGGCCGCAGCGTACGTTTCTACTCCCCGTTGTTCTGCTGCCGGCTATGTA
CCCATTCACGCAAATTGTCCACTGCATCTGTCGGATTCGCGACATATACA
TATTTGCTCCTGCTTTTAGACTACCGGTTTACCTTTTCCCCATGTGTTCG
TTTCGCGAATTGCCATCGAAACGTCGCAGGTGGTTTGTGACGGATGGGAC
CCGCAGAGCCGAACCGTTCATGGAGAGCACTTCAACTACCAACTGATCGG
CAAGCAGTACGCCTGCAAGGCGTGTAAAGCGAAGATCTCCAAGGGGAAAG
GCCGAGCGGGCAGCAACACCGACTACAAATTTTCGCCTTGGCACCCAGGG
GTGCTTGAGCTGCTTCCGCGTGACCTGGTGGAGTTGTTCCCTGCTGTCAT
CTTGCGGAGGTCAGCTAGCTGTGGACAAGAAGCTCATCACCCGCATCGAG
CAGAGACTTGTGAGCCCCATCGGTTTGAAGACCCTCGCAGACCACCTGAA
GGAGAACCACATGAAGCACTTCATGACCTTGCAGCTCCGGTGAGGAACCG
CTCAAGAAACCAGTGTTTGAACCTCGTGAATTGTTTTGCGATTCTTATGT
CACCACTCTTTCAACTGGTGACTTCCTTGCTGTTGCCTTCACGTTTATAG
CAACGGCACTTGGAAACCGCACTTATATGTAGTATCGGACCGTGCTGTGG
GGTTTTTGTTGTGTGCCGGTGTCTTCGAAATTGATGCAGATACTACACGT
GCATGGATAGGCGGAGAAGGCGTGGACAACCATCACTTGTGCCCGAAGAA
AACCAGCGGCTGCGCCATCCCCCTCGTTTCAGCCCGTTCGACGACAAAGC
TGGTTACAATGGCCGTCCACCTAGCGCTCCTGTCCTCCAAGCTGCTTTTT
TGGCTGTGATCGAGAGCAGGGAGCATTGTTACCACCGCCAGCAGCAGTTG
GTTTACGGCAAGAATCTTGGGGGGGACGACTCGCACAAGATCGTAAAGGG
GATCCGAGTGATGAACCAGAAAGTATTCCACGGAATCCACACTGTCCTAA
ACGAGTGGAGCCTGGTGGTGCTGCAGGTGAGGGGTGCGGTAGACAATGTT
GTACCATACTTCGCCAAGTATACGCTTGTCAATATTTCATCCGGGGCACT
CGCCTTTTGAACATACATTCACCCGCTCTCCCCTCCCCTTTGGCCACACT
CCGCATGTCTTATCACTCCTGTCGCGTCCCTAGTGCCCGAAGAGACAAGT
CGGCGTGAGAACTTTGGGCGAGATAAGAGAACCTTACCAGGCAGGCGCTC
GCCAAGCGTATCTTACCCACTCCTTTCTCCCTACCCAGGTGTGTTTTCGT
GTGGCGGTTGTATGTGATGGCGAATAACCCACTTATTTGTTGTTCTGTAT
GTTTGACGTGATGGATCGGGCGTCTGTAGACTGCTATGATATCGACGAGT
TATATTGCGCGAAACAACTTCTTCCGCCTGAACACTGGGCTTTCGGAGCA
AGCAGCAGTTGCCGACGTGCTCACACGTGTCGGGAAACGTTGCGCAGGTA
TATTATACCGACAACTGCTGTGGGGACAGGAGCTTCCTCCAAGAGACGCT
TGAGCCAGCATCTGTGGCTGTAGAGGATGCCGCCAACAGTACGTGCTTTG
CCGACGAGGATGAGGCGCTACCGCTTCTCGACTTCCCGAATGGCTTCAAC
GTCATTCTCCTGACCGTGTCCGGCGAGAACTGCGAGCAGTCTGCCAGGGC
TTGCGTGGAGTTATTGAGGCGCGGGCGTGAGGGAGGACCGGCGGTGCTTG
GGTTGGACATTGAGTGGAGTGTGCGTCCCTCCGGGCCTCGGCAAGTTGCA
ACCCTTCAGCTGTCAGCACGCTCCTTCCGCTGTTGTTGTTGCCGCCGCCG
CCGCCGCCGCCGCCGCAAGTGGCAACAGTTCTATGGACAATGTCGGCGAG
TCCGACTGTGGGGTTGGTCTGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7830:1109..4081- >mRNA_L-elsbetiae_contig7830.16791.1 ID=mRNA_L-elsbetiae_contig7830.16791.1|Name=mRNA_L-elsbetiae_contig7830.16791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig7830:1109..4081- (Laminarionema elsbetiae ELsaHSoW15) ATGAAGCACTTCATGACCTTGCAGCTCCGATGAAGCACTTCATGACCTTG CAGCTCCGATACTACACGTGCATGGATAGGCGGAGAAGGCGTGGACAACC ATCACTTGTGCCCGAAGAAAACCAGCGGCTGCGCCATCCCCCTCGTTTCA GCCCGTTCGACGACAAAGCTGGTTACAATGGCCGTCCACCTAGCGCTCCT GTCCTCCAAGCTGCTTTTTTGGCTGTGATCGAGAGCAGGGAGCATTGTTA CCACCGCCAGCAGCAGTTGGTTTACGGCAAGAATCTTGGGGGGGACGACT CGCACAAGATCGTAAAGGGGATCCGAGTGATGAACCAGAAAGTATTCCAC GGAATCCACACTGTCCTAAACGAGTGGAGCCTGGTGGTGCTGCAGATACT ACACGTGCATGGATAGGCGGAGAAGGCGTGGACAACCATCACTTGTGCCC GAAGAAAACCAGCGGCTGCGCCATCCCCCTCGTTTCAGCCCGTTCGACGA CAAAGCTGGTTACAATGGCCGTCCACCTAGCGCTCCTGTCCTCCAAGCTG CTTTTTTGGCTGTGATCGAGAGCAGGGAGCATTGTTACCACCGCCAGCAG CAGTTGGTTTACGGCAAGAATCTTGGGGGGGACGACTCGCACAAGATCGT AAAGGGGATCCGAGTGATGAACCAGAAAGTATTCCACGGAATCCACACTG TCCTAAACGAGTGGAGCCTGGTGGTGCTGCAGTGCCCGAAGAGACAAGTC GGCGTGAGAACTTTGGGCGAGATAAGAGAACCTTACCAGGCAGGCGCTCG CCAAGCGTATCTTACCCACTCCTTTCTCCCTACCCAGTGCCCGAAGAGAC AAGTCGGCGTGAGAACTTTGGGCGAGATAAGAGAACCTTACCAGGCAGGC GCTCGCCAAGCGTATCTTACCCACTCCTTTCTCCCTACCCAGGTATATTA TACCGACAACTGCTGTGGGGACAGGAGCTTCCTCCAAGAGACGCTTGAGC CAGCATCTGTGGCTGTAGAGGATGCCGCCAACAGTACGTGCTTTGCCGAC GAGGATGAGGCGCTACCGCTTCTCGACTTCCCGAATGGCTTCAACGTCAT TCTCCTGACCGTGTCCGGCGAGAACTGCGAGCAGTCTGCCAGGGCTTGCG TGGAGTTATTGAGGCGCGGGCGTGAGGGAGGACCGGCGGTGCTTGGGTTG GACATTGAGTGGAGTGTGCGTCCCTCCGGGCCTCGGCAAGTTGCAACCCT TCAGCTGTCAGCACGCTCCTTCCGCTGTTGTTGTTGCCGCCGCCGCCGCC GCCGCCGCCGCAAGTGGCAACAGTTCTATGGACAATGTCGGCGAGTCCGA CTGTGGGGTTGGTCTGGGGTATATTATACCGACAACTGCTGTGGGGACAG GAGCTTCCTCCAAGAGACGCTTGAGCCAGCATCTGTGGCTGTAGAGGATG CCGCCAACAGTACGTGCTTTGCCGACGAGGATGAGGCGCTACCGCTTCTC GACTTCCCGAATGGCTTCAACGTCATTCTCCTGACCGTGTCCGGCGAGAA CTGCGAGCAGTCTGCCAGGGCTTGCGTGGAGTTATTGAGGCGCGGGCGTG AGGGAGGACCGGCGGTGCTTGGGTTGGACATTGAGTGGAGTGTGCGTCCC TCCGGGCCTCGGCAAGTTGCAACCCTTCAGCTGTCAGCACGCTCCTTCCG CTGTTGTTGTTGCCGCCGCCGCCGCCGCCGCCGCCGCAAGTGGCAACAGT TCTATGGACAATGTCGGCGAGTCCGACTGTGGGGTTGGTCTGGG back to top
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