mRNA_L-elsbetiae_contig7827.16783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7827.16783.1
Unique NamemRNA_L-elsbetiae_contig7827.16783.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7827.16783.1 vs. uniprot
Match: A0A6H5KY88_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY88_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 7.100e-35
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 2 
Query:    2 FPFPPSPAALLSAGGGLLPSGFSLRPGAAVGPREAVDAARQAAGLATMIGPGLASIAQKFLVQLAARTLDRLADSFDDGAQGDDADAGGGIAAAGG-----------QELSSRQRGRFYAD 331
            FP PPSPAALL  GG + PSGFSL+PGAAVGPREAV+AARQAAGLA+MIGPG+ASIAQKFLVQLAARTLDRLADSFDD  QG+   AG G   AGG           +E +S +RGRFYAD
Sbjct: 1075 FPLPPSPAALLPGGGSIFPSGFSLQPGAAVGPREAVEAARQAAGLASMIGPGVASIAQKFLVQLAARTLDRLADSFDD--QGNKDGAGSGAGGAGGATTVEDVASGVREPASTRRGRFYAD 1193
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7827.16783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY88_9PHAE7.100e-3570.25ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7827contigL-elsbetiae_contig7827:5623..7475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D8LK12
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size950
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7827.16783.1prot_L-elsbetiae_contig7827.16783.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7827 5765..6865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.2915843-UTR-L-elsbetiae_contig7827:5622..57641622816867.2915843-UTR-L-elsbetiae_contig7827:5622..5764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7827 5623..5764 +
1691683873.0993872-UTR-L-elsbetiae_contig7827:5622..57641691683873.0993872-UTR-L-elsbetiae_contig7827:5622..5764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7827 5623..5764 +
1622816867.330123-UTR-L-elsbetiae_contig7827:6865..74751622816867.330123-UTR-L-elsbetiae_contig7827:6865..7475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7827 6866..7475 +
1691683873.135465-UTR-L-elsbetiae_contig7827:6865..74751691683873.135465-UTR-L-elsbetiae_contig7827:6865..7475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7827 6866..7475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.304827-CDS-L-elsbetiae_contig7827:5764..58231622816867.304827-CDS-L-elsbetiae_contig7827:5764..5823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7827 5765..5823 +
1691683873.1124117-CDS-L-elsbetiae_contig7827:5764..58231691683873.1124117-CDS-L-elsbetiae_contig7827:5764..5823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7827 5765..5823 +
1622816867.3188953-CDS-L-elsbetiae_contig7827:6726..68651622816867.3188953-CDS-L-elsbetiae_contig7827:6726..6865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7827 6727..6865 +
1691683873.1254776-CDS-L-elsbetiae_contig7827:6726..68651691683873.1254776-CDS-L-elsbetiae_contig7827:6726..6865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7827 6727..6865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7827.16783.1

>prot_L-elsbetiae_contig7827.16783.1 ID=prot_L-elsbetiae_contig7827.16783.1|Name=mRNA_L-elsbetiae_contig7827.16783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MIGPGLASIAQKFLVQLAARTLDRLADSFDDGAQGDDADAGGGIAAAGGQ
ELSSRQRGRFYADGQ*
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mRNA from alignment at L-elsbetiae_contig7827:5623..7475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7827.16783.1 ID=mRNA_L-elsbetiae_contig7827.16783.1|Name=mRNA_L-elsbetiae_contig7827.16783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1853bp|location=Sequence derived from alignment at L-elsbetiae_contig7827:5623..7475+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCCCTTCCCCCCGTCTCCGGCGGCGCTGCTGTCGGCGGGCGGCGGTC
TCCTGCCCTCGGGGTTCTCGCTGCGGCCCGGCGCCGCGGTGGGGCCGAGG
GAGGCCGTGGACGCGGCGCGGCAGGCGGCGGGGCTGGCGACGATGATCGG
GCCCGGGCTGGCCTCCATCGCGCAGAAGTTTTTGGTGCAGCTCGCGGCGA
GGTGAGGCTACATAAGCCGGCCGGGGGGGGGGGGGGGGGGGGGATTGCGT
GGCTGATTGATTGAGCGGGCTCTTGGGGCTTTTGAGTGGGGGCTACGTAG
CTCCATAGCTGGAGGTGGACTTTTTGCCACACGGGGGGGCGGGGGAGGTC
CCGCCGGTGGGCGAGGGGGGGTCCCGCCGGTGGGCGAGGGGGGGTCCCGC
CGGTGGGCGAGGGGGGGGGTCCCGTTAGGGATGTGGCCGTGGGGGGTTGG
TTGAGCCAAACACTAACGTCGTATGTATCCATCTCGCGGAGTTCAGTTTT
TGGTTCGGTTTGGTTCGGTTTGGTTCGGTTCTATGTACGTGGCGATCGAA
GGGGTGGGGGCGGAGGCGCTTGTGTGACGGGTCTTACGGGCGACCAATGG
TGCGTCAGCAAACACCACACCTTGTGCCGCACCATATTTCCCTACGTGTG
TAGGAAACGTATTTACGAAGATTTAGAACACAGCTGGAGTCATCAGAAAG
CATCAGAGGGCGGGGCGCGGCGCGTCGCGGGCGCACGCGAGCAGTATCCC
CTTTCTCAAGTTTTTTTTTTACCCTGGGACGACTGCGAGAGAGCAGTCAG
TCGCAACTTTGCCCTATGGCTGTGTGTGTGTACCCGGCGACACACGGTGT
CCGCGGGCTTGTTTCGGCGGTGGGGATGTTTGGCTCCCCGCCAAGCACCC
GCACGAGAAACAATTGCTCTCGACTATATATAGGCTACATTTGCACCCAC
ACGACGCCTCTCGCCGAGAATGATACCTCGAATCAACCCCAAAAGCCCAC
CCTTGCTCTTTTCCTCGCACGACGACACCGGGCACCGGACGCCTTTCTCC
TCGCGGCTGGCTCAATCAATCACCCTGTTGATCGCCCGTTTCTACCCTGT
TAAGGACGTTGGACCGTCTTGCGGACAGCTTCGACGATGGAGCTCAAGGC
GATGATGCTGATGCTGGTGGGGGTATCGCGGCGGCGGGCGGGCAGGAGCT
GTCTTCCCGACAGCGGGGCCGCTTCTACGCCGATGGGCAGTAAAGGTGGA
TATGCACCGCGCCCCCCCCCCCCTTGAAACGATTGATGAAAAAATAAGAA
AAGGGCCTTTTTTTCTTTTCTGAAAATTTTGGCGTGGTCTCGCGCGGTAA
AAAAAAAAGTAGCGAGGACCATGGGTCCCCCCCACACCTTCTTTGTGTCT
TTATTTTGTCGTGAACGGGGGGGGGGCGAACAAGCTTGATAGACGGCCGA
CGATAACAGAGTACCTTTCTTGGTTTGCCTTTGCTGTGTTTCTTTGATGA
GGGGCTACGTGTCGATCGACCGTTGGTGGTGTGAAAATGCCGTCTTTTGG
TTACAATTTGGTGCGCGTGCGTGAGCTTGGGGAAATGGGGGTTCGATTTT
GTCTTAAACAAACCACAGAGTCGACCCCGTTTTTTGTCAATTTTCTCTTT
ATTTGTTGTTGATGGTGAGGTGGTGTGTATGTGGGTGTGTCTTGTGTCTC
AGTCTTCTTTGTGGTGAAGTTGCCGTAACCGGGCAAGGAGAAAACAGAGA
AGAAGTCAGAGTTGCCTTCTTTACCTGCTCTTCTCTGGGAGCGAGATATA
TACGTTCGCGATTTCACTCGCCAAGACGGTCATTTTTGTTGCTTGTGGGT
GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7827:5623..7475+

>mRNA_L-elsbetiae_contig7827.16783.1 ID=mRNA_L-elsbetiae_contig7827.16783.1|Name=mRNA_L-elsbetiae_contig7827.16783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig7827:5623..7475+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGGGCCCGGGCTGGCCTCCATCGCGCAGAAGTTTTTGGTGCAGCT
CGCGGCGAGATGATCGGGCCCGGGCTGGCCTCCATCGCGCAGAAGTTTTT
GGTGCAGCTCGCGGCGAGGACGTTGGACCGTCTTGCGGACAGCTTCGACG
ATGGAGCTCAAGGCGATGATGCTGATGCTGGTGGGGGTATCGCGGCGGCG
GGCGGGCAGGAGCTGTCTTCCCGACAGCGGGGCCGCTTCTACGCCGATGG
GCAGTAAGACGTTGGACCGTCTTGCGGACAGCTTCGACGATGGAGCTCAA
GGCGATGATGCTGATGCTGGTGGGGGTATCGCGGCGGCGGGCGGGCAGGA
GCTGTCTTCCCGACAGCGGGGCCGCTTCTACGCCGATGGGCAGTAA
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