mRNA_L-elsbetiae_contig7823.16779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7823.16779.1
Unique NamemRNA_L-elsbetiae_contig7823.16779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: A0A6H5K487_9PHAE (SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K487_9PHAE)

HSP 1 Score: 518 bits (1334), Expect = 6.130e-185
Identity = 250/272 (91.91%), Postives = 266/272 (97.79%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCTASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRRRPVKE 825
            ++VKEVLFHERSDFQDVLVFDSV+YGKVLVLDGVIQLTERDECSYQEMLTHIPCFA G+PKKVLIVGGGDGGVLREVARHPGVETIHMCEIDS+VCEVS+RF+FCTASAFGD RL LVHEDAAEFVK+EGN+GYD+IIVDSSDPVGPAETLFQP+FYQNMK+ALAP+GVIATQGECLWLHLPLITTVLRACAE+FGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPA+TP AAMTEVLRYYSPEVH+AAFVLPVFAEKEIAGVRRR  KE
Sbjct:   22 LEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSVVCEVSRRFEFCTASAFGDARLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEIFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPASTPNAAMTEVLRYYSPEVHRAAFVLPVFAEKEIAGVRRRSSKE 293          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: A0A835ZDK7_9STRA (Spermidine/spermine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK7_9STRA)

HSP 1 Score: 418 bits (1075), Expect = 1.600e-145
Identity = 198/268 (73.88%), Postives = 232/268 (86.57%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCTASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRRR 813
            +QV++VLFHE+SDFQDVLVF S  YGKVLVLDGVIQ+TERDE +YQEMLTHIPCFAH +PK+VLIVGGGDGG+LREVARH  VE I MCEID MVC+VSK+F+F TA+AFGD RL LVHEDAAEFVKREGN  YD+IIVDSSDPVGPAETLF+P F+ +MK AL+P G++ATQGECLWLHL LI  VL +CA  F S++YAFTT+P+YPSGQIGFV+ S  ERDLSTPA  P+AAM + LRYYSP VH++AFVLP FAE+E++ VR+R
Sbjct:   22 LQVEKVLFHEKSDFQDVLVFQSATYGKVLVLDGVIQVTERDEFAYQEMLTHIPCFAHPHPKRVLIVGGGDGGILREVARHACVENIDMCEIDPMVCDVSKKFEFSTATAFGDPRLRLVHEDAAEFVKREGNGQYDVIIVDSSDPVGPAETLFKPEFFLSMKNALSPGGIVATQGECLWLHLKLIRGVLESCASTFTSLEYAFTTMPTYPSGQIGFVVGSTAERDLSTPAREPDAAMAQDLRYYSPAVHRSAFVLPAFAEREVSAVRKR 289          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: H3GAD3_PHYRM (PABS domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3GAD3_PHYRM)

HSP 1 Score: 345 bits (884), Expect = 1.800e-116
Identity = 161/270 (59.63%), Postives = 217/270 (80.37%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCT-ASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRR 810
            +Q++EVLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FAH  PK+VLIVGGGDGGVLREV +H  V+ + MCEID+MVC+VSK+F   T A+AF D R+TL+H DAA +++   ++ +D++IVDSSDPVGPAE L++  FY+NMK +L+P GVI TQGECLWLHL LI  V++ C  +F +V+Y++TT+P+YPSGQIGF++ S+++ +  L+ P  TP+A M + LRYY+P++H+A+FVLP FAE++I  VR+
Sbjct:   22 LQMEEVLFQGKSDFQDVLVFKSATYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVTKHDCVQEVVMCEIDAMVCDVSKQFFKDTVATAFDDPRVTLLHADAAVYLRENTSDKFDVVIVDSSDPVGPAEVLYRAEFYENMKNSLSPDGVICTQGECLWLHLDLIVEVMQRCQNLFPTVNYSYTTIPTYPSGQIGFIMCSLDDSEGVLAKPKRTPDAKMEQTLRYYNPKIHEASFVLPSFAERKIVAVRK 291          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: A0A3M6VRP9_9STRA (PABS domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRP9_9STRA)

HSP 1 Score: 344 bits (882), Expect = 4.150e-116
Identity = 160/270 (59.26%), Postives = 215/270 (79.63%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCT-ASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRR 810
            +++++VLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FAH  PK+VLIVGGGDGGVLREV +H  V+ + MCEIDSMVC+VSK+F   T A+AF D R+TL+H DAA +++   N+ +D++IVDSSDPVGPAE L++  FY+NMK++L+P G+I TQGECLWLHL LI  V+  C  +F SV+Y++TT+P+YPSGQIGF++ S+++ +  L  P   P+A M + LRYY+P++H+A+FVLP FAE++I  VR+
Sbjct:   26 IEIEQVLFKGKSDFQDVLVFKSATYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVTKHDCVQEVVMCEIDSMVCDVSKKFFKDTVATAFDDPRVTLLHADAAVYLRENRNDKFDVVIVDSSDPVGPAEVLYRAEFYENMKKSLSPDGIICTQGECLWLHLDLIVDVMTRCQNLFSSVNYSYTTIPTYPSGQIGFIMCSLDDSEGVLIKPKRLPDAKMEQTLRYYNPKIHEASFVLPNFAERKITTVRK 295          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: A0A0P1ACQ1_PLAHL (Spermidine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACQ1_PLAHL)

HSP 1 Score: 343 bits (879), Expect = 1.070e-115
Identity = 166/268 (61.94%), Postives = 212/268 (79.10%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCT-ASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRR 810
            +QV++VLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FAH  PK+VLIVGGGDGGVLREV +H  VE I MCEIDSMVC+VSK+F   T A+AF D R+TL+H DAA ++     N +D++IVDSSDPVGPAE L++  FYQ+MK AL+P GVI TQGECLWLHL LI  V++ C  +F +V+YA++T+P+YPSGQIGF++ S   + +  P  TP+A M++ LRYYS ++H+A+FVLP FAE++IA VR+
Sbjct:   26 LQVEKVLFQGKSDFQDVLVFKSTTYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVIKHDCVEEIIMCEIDSMVCDVSKKFFTETVATAFNDPRVTLLHADAALYLHENTTNKFDVVIVDSSDPVGPAEVLYKAEFYQSMKNALSPDGVICTQGECLWLHLDLIVDVMQRCQSLFSTVNYAYSTIPTYPSGQIGFIMCS-SGQSVDKPKRTPDAKMSKTLRYYSAKIHEASFVLPGFAEQKIATVRK 292          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: A0A067CIH9_SAPPC (Spermidine synthase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CIH9_SAPPC)

HSP 1 Score: 340 bits (872), Expect = 1.280e-114
Identity = 169/270 (62.59%), Postives = 205/270 (75.93%), Query Frame = 1
Query:   19 KEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCT-ASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRRRPV 819
            +EVLFH +SDFQDVLVF S  YG VLVLDGVIQ+TERDE SYQEM++H+P ++H NPK VLIVGGGDGGVLREVA+HP VE I MCEID MVC+VSK+F   T A+ F D RLTL+H+DAA F++      YD+IIVDSSDPVGPAE LF+  FY+NMK AL P G++ TQGECLWLH+ LI  VL      F +V YA+TT+P+YPSGQIGFVL S++E    L+ P    +    E LRYY+ ++H+AAFVLP FAEK+IA VR+  V
Sbjct:   24 EEVLFHGKSDFQDVLVFKSQTYGNVLVLDGVIQVTERDEFSYQEMISHLPLYSHANPKSVLIVGGGDGGVLREVAKHPSVEKIVMCEIDPMVCDVSKKFFADTLATTFNDPRLTLMHDDAAAFLRNGDCGKYDVIIVDSSDPVGPAEVLFRSEFYENMKNALNPNGIVCTQGECLWLHIDLIADVLGRVGGFFPTVQYAYTTIPTYPSGQIGFVLCSLDESPNALNKPKRIVDEKTAENLRYYNSKIHEAAFVLPSFAEKKIAPVRKTTV 293          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: K3WTM8_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WTM8_GLOUD)

HSP 1 Score: 338 bits (868), Expect = 6.370e-114
Identity = 165/270 (61.11%), Postives = 204/270 (75.56%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCT-ASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRR 810
            ++++EVLF  +SDFQDVLVF S  YG VLVLDGVIQ TERDE SYQEM+TH+P FAH  PK VLIVGGGDGGVLREV +H  VE I  CEID MVCEVSK+F   T A++F D R TL+H DAA +++      +D+IIVDSSDPVGPAE LF+  FY+NMK++LAP G++ TQGECLWLHL LI  VL  C   F ++ YAFTT+P+YPSGQIGF++ S++E    L  P   P A + E LRYY+ +VH+AAFVLP FAE++I+ VR+
Sbjct:   26 LEMEEVLFQGKSDFQDVLVFKSATYGNVLVLDGVIQCTERDEFSYQEMITHLPMFAHAQPKNVLIVGGGDGGVLREVVKHDSVEKIVFCEIDPMVCEVSKKFFKNTLATSFDDPRCTLIHADAAAYLRNNTTEKFDVIIVDSSDPVGPAEVLFRAEFYENMKKSLAPGGIVCTQGECLWLHLDLIVEVLGRCQNYFPTIQYAFTTIPTYPSGQIGFIVCSLDESKDALVKPKRAPTAEVQETLRYYNSKVHEAAFVLPQFAERKISTVRK 295          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: A0A6V1NMD1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NMD1_HETAK)

HSP 1 Score: 339 bits (870), Expect = 1.030e-113
Identity = 166/271 (61.25%), Postives = 203/271 (74.91%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKR-FDFCTASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRRR 813
            +QV+EV+FH++SD+QDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FAH NPKKVLI+GGGDGGVLREV +HP VE I MCEID +V + +K  F   TA+A+ D RL LV  DAAE+++REG+  YD+I+ DSSDPVGPAE+LFQP FY+ M  AL P G+  TQGEC WLHL LI  V+ ACA +F  V+Y +TT+P+YPSGQIGFVL S   +D  L++P   P A M   LRYY P VH+AAFVLP FA   +   R +
Sbjct:   43 LQVEEVVFHQKSDYQDVLVFKSSTYGMVLVLDGVIQLTERDEFAYQEMITHLPMFAHPNPKKVLIIGGGDGGVLREVVKHPTVEKIDMCEIDDVVIQCAKDYFGESTATAYADPRLNLVQGDAAEYIRREGHERYDVIVCDSSDPVGPAESLFQPAFYEAMANALEPGGITCTQGECQWLHLELIEKVVAACASLFNQVEYGYTTIPTYPSGQIGFVLCSNNPQDGALTSPRRAPPAGMA--LRYYRPAVHRAAFVLPAFAHAAVQRARAK 311          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: M4C138_HYAAE (PABS domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C138_HYAAE)

HSP 1 Score: 337 bits (864), Expect = 2.250e-113
Identity = 161/270 (59.63%), Postives = 211/270 (78.15%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDFCT-ASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEIAGVRR 810
            +++  VLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FAH  PK+VLIVGGGDGGVLREV +H  V+ I MCEID MVC VSK+F   T A+AF D R+TL+H DAA ++K   ++ +D++IVDSSDPVGPAE L++  FY++MK+ L+P GVI TQGECLWLHL LI  V++ C  +F SV+Y++TT+P+YPSGQIGF++ S++E +  L  P  TP+  M + LRYY+ ++H+A+FVLP FAE++IA VR+
Sbjct:   26 LEIDHVLFQGKSDFQDVLVFQSATYGNVLVLDGVIQLTERDEFAYQEMITHLPLFAHKQPKRVLIVGGGDGGVLREVTKHDCVQKIVMCEIDPMVCHVSKKFFKNTVATAFDDPRVTLLHADAAVYLKEHTSDKFDVVIVDSSDPVGPAEVLYRAEFYESMKKCLSPDGVICTQGECLWLHLDLIADVMQRCRALFPSVNYSYTTIPTYPSGQIGFIICSLDESEGVLVKPKRTPDDKMEQTLRYYNAKIHEASFVLPSFAERKIATVRK 295          
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Match: F0YCA3_AURAN (PABS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA3_AURAN)

HSP 1 Score: 337 bits (863), Expect = 3.920e-113
Identity = 170/275 (61.82%), Postives = 209/275 (76.00%), Query Frame = 1
Query:   10 VQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFDF-CTASAFGDKRLTLVHEDAAE-------FVKRE---GNNGYDIIIVDSSDPVGPAETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEE--RDLSTPAATPEAAMTEVLRYYSPEVHKAAFVLPVFAEKEI 795
            ++V EVL H RS FQD+LVF S  YG+VLVLDGVIQLTERDE +YQEM+ H+P F+H  PK+VLIVGGGDGGVLREVARH  VETI MCEID+ V EVSK+F    TA+A+GD RLTLVH DAA          +R+   G  GYD+IIVDSSDPVGPAETLF+P FY +M+ ALAP G + TQGEC+WLHLPLI+ V+ AC ++F +V+YA+T VP+YPSGQIGF++ S++E    L  P   P   + + L+YYSP+VH AAFVLP FAE+E+
Sbjct:   25 LKVGEVLHHSRSAFQDILVFQSETYGRVLVLDGVIQLTERDEFAYQEMIAHLPLFSHPEPKRVLIVGGGDGGVLREVARHACVETIDMCEIDAGVVEVSKKFFAESTATAYGDARLTLVHADAAADPAVAAALARRQTPGGWPGYDVIIVDSSDPVGPAETLFEPAFYDSMRAALAPGGAVCTQGECMWLHLPLISKVVSACRDLFPTVEYAYTCVPTYPSGQIGFIMCSLDESRHALVKPVRAPVGHLQDQLKYYSPDVHAAAFVLPPFAEREL 299          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7823.16779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K487_9PHAE6.130e-18591.91SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835ZDK7_9STRA1.600e-14573.88Spermidine/spermine synthase n=1 Tax=Tribonema min... [more]
H3GAD3_PHYRM1.800e-11659.63PABS domain-containing protein n=10 Tax=Phytophtho... [more]
A0A3M6VRP9_9STRA4.150e-11659.26PABS domain-containing protein n=1 Tax=Peronospora... [more]
A0A0P1ACQ1_PLAHL1.070e-11561.94Spermidine synthase n=1 Tax=Plasmopara halstedii T... [more]
A0A067CIH9_SAPPC1.280e-11462.59Spermidine synthase n=4 Tax=Saprolegniaceae TaxID=... [more]
K3WTM8_GLOUD6.370e-11461.11PABS domain-containing protein n=2 Tax=Pythiaceae ... [more]
A0A6V1NMD1_HETAK1.030e-11361.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M4C138_HYAAE2.250e-11359.63PABS domain-containing protein n=1 Tax=Hyaloperono... [more]
F0YCA3_AURAN3.920e-11361.82PABS domain-containing protein n=1 Tax=Aureococcus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7823contigL-elsbetiae_contig7823:5671..8761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score519.2
Seed ortholog evalue1.1e-144
Seed eggNOG ortholog2880.D7FKW3
Preferred nameSRM
KEGG rclassRC00003,RC00021,RC00053,RC00060,RC00215,RC00225
KEGG koko:K00293,ko:K00797,ko:K00802,ko:K05353
KEGG ReactionR01153,R01920,R02315,R02869,R08359
KEGG Pathwayko00270,ko00300,ko00310,ko00330,ko00410,ko00480,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00310,map00330,map00410,map00480,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00030,M00032,M00034,M00133
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009653,GO:0009987,GO:0010033,GO:0015939,GO:0015940,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016768,GO:0017144,GO:0019752,GO:0030587,GO:0031150,GO:0031154,GO:0031288,GO:0032502,GO:0032787,GO:0034097,GO:0034641,GO:0036360,GO:0042221,GO:0042364,GO:0042398,GO:0042401,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046983,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0051703,GO:0051704,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0072330,GO:0090702,GO:0097164,GO:0099120,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
Ec32 ortholog descriptionspermidine/spermine synthase
Ec32 orthologEc-17_001590.1
EC1.5.1.10,2.1.1.53,2.5.1.16,2.5.1.22
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons6
Model size828
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7823.16779.1prot_L-elsbetiae_contig7823.16779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7823 5671..8761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.9135592-CDS-L-elsbetiae_contig7823:5670..58191622816866.9135592-CDS-L-elsbetiae_contig7823:5670..5819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 5671..5819 -
1691683872.8243668-CDS-L-elsbetiae_contig7823:5670..58191691683872.8243668-CDS-L-elsbetiae_contig7823:5670..5819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 5671..5819 -
1622816866.929378-CDS-L-elsbetiae_contig7823:6003..61991622816866.929378-CDS-L-elsbetiae_contig7823:6003..6199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 6004..6199 -
1691683872.8391323-CDS-L-elsbetiae_contig7823:6003..61991691683872.8391323-CDS-L-elsbetiae_contig7823:6003..6199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 6004..6199 -
1622816866.9402537-CDS-L-elsbetiae_contig7823:6437..65241622816866.9402537-CDS-L-elsbetiae_contig7823:6437..6524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 6438..6524 -
1691683872.8485153-CDS-L-elsbetiae_contig7823:6437..65241691683872.8485153-CDS-L-elsbetiae_contig7823:6437..6524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 6438..6524 -
1622816866.9504032-CDS-L-elsbetiae_contig7823:6777..68731622816866.9504032-CDS-L-elsbetiae_contig7823:6777..6873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 6778..6873 -
1691683872.860272-CDS-L-elsbetiae_contig7823:6777..68731691683872.860272-CDS-L-elsbetiae_contig7823:6777..6873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 6778..6873 -
1622816866.964418-CDS-L-elsbetiae_contig7823:7368..74731622816866.964418-CDS-L-elsbetiae_contig7823:7368..7473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 7369..7473 -
1691683872.869801-CDS-L-elsbetiae_contig7823:7368..74731691683872.869801-CDS-L-elsbetiae_contig7823:7368..7473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 7369..7473 -
1622816866.9761012-CDS-L-elsbetiae_contig7823:8566..87611622816866.9761012-CDS-L-elsbetiae_contig7823:8566..8761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 8567..8761 -
1691683872.8788238-CDS-L-elsbetiae_contig7823:8566..87611691683872.8788238-CDS-L-elsbetiae_contig7823:8566..8761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7823 8567..8761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7823.16779.1

>prot_L-elsbetiae_contig7823.16779.1 ID=prot_L-elsbetiae_contig7823.16779.1|Name=mRNA_L-elsbetiae_contig7823.16779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MSFVQVKEVLFHERSDFQDVLVFDSVNYGKVLVLDGVIQLTERDECSYQE
MLTHIPCFAHGNPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCE
VSKRFDFCTASAFGDKRLTLVHEDAAEFVKREGNNGYDIIIVDSSDPVGP
AETLFQPTFYQNMKRALAPLGVIATQGECLWLHLPLITTVLRACAEMFGS
VDYAFTTVPSYPSGQIGFVLASVEERDLSTPAATPEAAMTEVLRYYSPEV
HKAAFVLPVFAEKEIAGVRRRPVKE*
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mRNA from alignment at L-elsbetiae_contig7823:5671..8761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7823.16779.1 ID=mRNA_L-elsbetiae_contig7823.16779.1|Name=mRNA_L-elsbetiae_contig7823.16779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3091bp|location=Sequence derived from alignment at L-elsbetiae_contig7823:5671..8761- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTTTGTCCAGGTGAAAGAGGTGCTGTTTCATGAGCGATCTGACTT TCAAGACGTGCTAGTTTTCGATTCAGTCAACTATGGGAAAGTCCTCGTCC TGGATGGGGTGATCCAGCTCACCGAAAGAGACGAGTGCTCGTATCAGGAG ATGCTCACACATATTCCATGCTTTGCGCATGGAAATCCCAAGAAGGTATG TTGTGCATAACCCTCGTGTGCCTCTGCACATACGTACAAGGGCGCTTCGC GGCGGCCCGCTGACGCGTGCCACCGCTACGCGTAGTCCCGTAGGCGATGG CAAGTGTCAGAAGCATTTTTCCCGCCAACGAGACTACTACTCTGATAAGC CGAGTCGTCGTAGATTTCGGAGACGCGACTTTGCGAGGGCGCACGGGCAG GGCCCTCGCAGCCGAGGGCTACCGGCAGGCTCAAAGATTCCAGCGAGGCG AGGTCGACGGACCGAGAACACCCAGAAAAGGATGCTGTTAGGCTCCTGAG CGAGAGAGGCCCAAGGACGATAGTGTGTGTGTGTGTGTGTGTGTGTGTGT CCTTCCCATTTACTTAGCGACAGTCCCCCCAAGTGGAGACGTGTACTACA CCTTGCGGTGTACTTAGAGGTACTACCCTTTGCAGTGCATTTGTCTGTAC AACTAAAACCAACCGGGATCACACAGGAGGAGGTGAAACACTGGGACTTT TTCTTCTTTATTTTCGTTTTTTGCAGGACGATAGTAGATAGGTTTATTGT ACACCGCCACAAATTAGACCACTACAAGTAGTAATGTAGTAATTACATTA GCAGGGACTGCGATTCAAGCGCGGCACGCCAGCACAGCAGTTCGCGTTCG CCAGCAAAGACACCCTGGCGGGATATGTAGACTTCTGTTGCCGTAAAATT GGTTTTGGTTTGTGGTTTTTCGCCCTATGCATGGTCAAACCTTAGGTCGG GACAGCAGTATTACATGCGACTATGTACGCTGTATGTACTCCGCAGTCAA ACCTGAAGTCGTCGGCATACTGATTTTCGCCGTCAGCGATCGAAAATCAC GCCTATAGAAGTATGCTCTTCGCGCGCATTTCGGGCACCTTCATATGTAC TCCTTTGTACATCTGCCCCCGTTCGGGCGCGCTGTCCTCGCGCTCGTCAC ACGTTCCAAATTCCAGCAACACGAGAAACCATGTCGGCCTCAAGGCAGGC AAACCAGCGGTGCCTTATCCCGCTGTCGAGAATGAAGTGCTGTTGACGTT TACCTATATATGTATCTATGTATGCACCCTGACCCCAGGTTCTGATTGTG GGCGGTGGGGACGGCGGTGTTCTTCGAGAAGTGGCCCGTCACCCTGGCGT GGAAACTATTCACATGTGCGAGATCGACTCCATGGTGTGCGAGGTAATTT TAGCGATTATTTCACACGTATGCCTTACTTCAAACCATCACACCTTCATC CCGGCAAGTTACCAAAGTATGAACTGCGAGACGAGCTGGTGGGGATATCT CAGCGCCCACAAAATGCCTGTGGTATCCGCTGTCCACTTATTTGTACTTG TGACCGTATGGCAGCAGTGTGGATGACCCTTTGTGCGATATGTACCTCTA TCCTTTTTTGGCACTTCCATTCTCCCTCCCCCGCACGTACTCTACCAGGT CACCCAACACCTAGCGCATTTGGATAGTTGTAGTTATATGTCGTCACAAG ATCCGGCAGCATAACCTCATTCAGCAAAGCTTTGCATTGTTCGCCTGGGA GACAACTCTTCCCATAGCATTGCGGTCCTGTTTTTGCTGCCATCGCATCG TACAAAGGCGACAGCGTTTCTGCGCTGGATATGTCTAGCAGGTATCTACC ACTTGATGCCCTTCTTTGCACGTTACAAATGTGTGCAGGTGTCGAAGCGT TTTGATTTTTGCACCGCTTCTGCCTTCGGTGACAAGCGTCTCACGCTTGT GCACGAAGATGCCGCGGAGTTCGTCAAGAGGGAGGTGAAGACAGATGCAG AATTTGTGTAGATTTTTTCATCGTGTTGAACAGCCTTTGCGAGCAGCATA TTTGTCTCGTTTTGCGTATTTCCTATATGCGTAGTCAAACTTTACCAGTG TACAAAGTGTCGGTGTCGGAGGCTGTACCTGGTAGGTATTGTAGCACTGG TGAGGTGTGCCTGCGTGGGTTTTCTTCGCCGCCTACTTGACGTGTTCCGC TTATTCTGCGTATTGTGTTCTGTCGGCTTCTCGGCAGGGAAATAACGGAT ATGACATCATCATCGTGGACTCGTCCGATCCTGTCGGTCCTGCCGAAACG CTCTTCCAGCCAACCTTTTACCAAGTGAGAGACGCTTGAGATCAAGGAAG GAGAGGAAAAGACACCTGTCTGGCCGATGCCAAAGCGGCTGCAAAATGTG CAAGGGTGCACGGTTGACAAATACTCCAATCAAACCTAACAGTCTCCGGT CCTTTTAACCCGCCAACCATCGCGGCATAGCTTGTTTGTTTTGCAGCTCG TTGACGTGTGTTTCCTCTGTACGTCTCGTTTCCCGCCCGTGTCTCCCCAC ATGTCCATGTAGAACATGAAGCGAGCTCTCGCGCCCCTGGGTGTCATCGC AACGCAAGGCGAATGCCTGTGGCTGCACTTGCCGCTAATCACCACTGTTC TCCGTGCATGTGCTGAGATGTTTGGCTCCGTGGATTATGCCTTCACCACC GTCCCGTCCTACCCGTCCGGACAAATCGGTTTCGTTCTTGCGAGCGTAGA AGAGCGAGGTGAGATTTAAGAGAACTTTCAGAGGTCCTCGGTATGATGGG CGGGCGGGTGGGGCAGATCTCGCGCAAGCCTCCCACCTACAGACACCGGC TAAGTCCTCGTGGGACCTTAGATCGAATGTAAACCTATGTAGGTTCCATC CAATTCCATCCAATTCCATCTTGACGTGCTACGCTTTCGCAGATCTATCT ACGCCGGCGGCTACACCAGAAGCTGCCATGACTGAGGTGCTGAGATACTA CAGCCCAGAGGTGCACAAGGCTGCTTTTGTCCTGCCTGTCTTCGCGGAGA AAGAGATCGCAGGTGTCAGAAGACGGCCCGTCAAAGAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7823:5671..8761-

>mRNA_L-elsbetiae_contig7823.16779.1 ID=mRNA_L-elsbetiae_contig7823.16779.1|Name=mRNA_L-elsbetiae_contig7823.16779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig7823:5671..8761- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTTTGTCCAGGTGAAAGAGGTGCTGTTTCATGAGCGATCTGACTT
TCAAGACGTGCTAGTTTTCGATTCAGTCAACTATGGGAAAGTCCTCGTCC
TGGATGGGGTGATCCAGCTCACCGAAAGAGACGAGTGCTCGTATCAGGAG
ATGCTCACACATATTCCATGCTTTGCGCATGGAAATCCCAAGAAGATGTC
GTTTGTCCAGGTGAAAGAGGTGCTGTTTCATGAGCGATCTGACTTTCAAG
ACGTGCTAGTTTTCGATTCAGTCAACTATGGGAAAGTCCTCGTCCTGGAT
GGGGTGATCCAGCTCACCGAAAGAGACGAGTGCTCGTATCAGGAGATGCT
CACACATATTCCATGCTTTGCGCATGGAAATCCCAAGAAGGTTCTGATTG
TGGGCGGTGGGGACGGCGGTGTTCTTCGAGAAGTGGCCCGTCACCCTGGC
GTGGAAACTATTCACATGTGCGAGATCGACTCCATGGTGTGCGAGGTTCT
GATTGTGGGCGGTGGGGACGGCGGTGTTCTTCGAGAAGTGGCCCGTCACC
CTGGCGTGGAAACTATTCACATGTGCGAGATCGACTCCATGGTGTGCGAG
GTGTCGAAGCGTTTTGATTTTTGCACCGCTTCTGCCTTCGGTGACAAGCG
TCTCACGCTTGTGCACGAAGATGCCGCGGAGTTCGTCAAGAGGGAGGTGT
CGAAGCGTTTTGATTTTTGCACCGCTTCTGCCTTCGGTGACAAGCGTCTC
ACGCTTGTGCACGAAGATGCCGCGGAGTTCGTCAAGAGGGAGGGAAATAA
CGGATATGACATCATCATCGTGGACTCGTCCGATCCTGTCGGTCCTGCCG
AAACGCTCTTCCAGCCAACCTTTTACCAAGGAAATAACGGATATGACATC
ATCATCGTGGACTCGTCCGATCCTGTCGGTCCTGCCGAAACGCTCTTCCA
GCCAACCTTTTACCAAAACATGAAGCGAGCTCTCGCGCCCCTGGGTGTCA
TCGCAACGCAAGGCGAATGCCTGTGGCTGCACTTGCCGCTAATCACCACT
GTTCTCCGTGCATGTGCTGAGATGTTTGGCTCCGTGGATTATGCCTTCAC
CACCGTCCCGTCCTACCCGTCCGGACAAATCGGTTTCGTTCTTGCGAGCG
TAGAAGAGCGAGAACATGAAGCGAGCTCTCGCGCCCCTGGGTGTCATCGC
AACGCAAGGCGAATGCCTGTGGCTGCACTTGCCGCTAATCACCACTGTTC
TCCGTGCATGTGCTGAGATGTTTGGCTCCGTGGATTATGCCTTCACCACC
GTCCCGTCCTACCCGTCCGGACAAATCGGTTTCGTTCTTGCGAGCGTAGA
AGAGCGAGATCTATCTACGCCGGCGGCTACACCAGAAGCTGCCATGACTG
AGGTGCTGAGATACTACAGCCCAGAGGTGCACAAGGCTGCTTTTGTCCTG
CCTGTCTTCGCGGAGAAAGAGATCGCAGGTGTCAGAAGACGGCCCGTCAA
AGAGTAAATCTATCTACGCCGGCGGCTACACCAGAAGCTGCCATGACTGA
GGTGCTGAGATACTACAGCCCAGAGGTGCACAAGGCTGCTTTTGTCCTGC
CTGTCTTCGCGGAGAAAGAGATCGCAGGTGTCAGAAGACGGCCCGTCAAA
GAGTAA
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