mRNA_L-elsbetiae_contig779.16736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig779.16736.1 vs. uniprot
Match: A0A6H5KKK5_9PHAE (DUF4211 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK5_9PHAE) HSP 1 Score: 570 bits (1468), Expect = 1.470e-184 Identity = 297/369 (80.49%), Postives = 316/369 (85.64%), Query Frame = 1 Query: 1879 GDASFSHAAFFHEMEQSQDGGVSSLSVGTMTFKEAFLFYVEYIARATQGDGVGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGTWRQDFRDTIMRYPHYGYLNVMGDESHVTDRCSACNRSNRTSVVAFLSGAEYEPNRVWDGLRWDKHLPEHWDNPGAMAISKQARICFRMHRSSKATHFLGDTCKHKSHLFHSLTHYKLYLVSKVAAKINEDDDLEPENFRGEGGPQTSKKKKKRCLNFSENEFESLSSLLTKADDLNGVKWGGRVGVRGGHGKTFLQAGAASSILDWLSGEAPPEQYGDLNLGPGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHVGRGRRWRTVGSSGGRYG 2985 GDA FSHAAFF+EMEQS+DGGVSSLSVGTMTFKEAFLFYVEYIA+ATQGDG GEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCG+WRQDFRDTIMRYPHYGY +V GD + DRCSACNRSNRTSV+AFLSG+EY+PNRVWDGLRWDKHLPEHWD+P A A++KQ +KATH+LGDTCKHKSHLFHSLTHYKLYLVSKV+AKI D LEPENFRGEGGPQTSKK+KKRCLNFSENEFESLS+LL KADDLNGVKWGGR GVRGGHGKTFL+ GAASSILDWLSGEA QYG L+LG XXXXXXXXXXXXXXX VGRGRRWRTVGSS GRYG Sbjct: 630 GDAFFSHAAFFNEMEQSEDGGVSSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLNDRCSACNRSNRTSVIAFLSGSEYDPNRVWDGLRWDKHLPEHWDDPDAAAVAKQ---------EAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKKEKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGGLDLGE------------LEGQGPXXXXXXXXXXXXXXXXDVGRGRRWRTVGSSSGRYG 977
BLAST of mRNA_L-elsbetiae_contig779.16736.1 vs. uniprot
Match: D7G8T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T8_ECTSI) HSP 1 Score: 310 bits (794), Expect = 6.650e-95 Identity = 173/268 (64.55%), Postives = 190/268 (70.90%), Query Frame = 1 Query: 2182 IMRYPHYGYLNVMGDESHVTDRCSACNRSNRTSVVAFLSGAEYEPNRVWDGLRWDKHLPEHWDNPGAMAISKQARICFRMHRSSKATHFLGDTCKHKSHLFHSLTHYKLYLVSKVAAKINEDDDLEPENFRGEGGPQTSKKKKKRCLNFSENEFESLSSLLTKADDLNGVKWGGRVGVRGGHGKTFLQAGAASSILDWLSGEAPPEQYGDLNLGPGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHVGRGRRWRTVGSSGGRYG 2985 I+ Y G + + + C C+R ++ F +VWDGLRWDKHLPEHWD+P A A++KQ +KATH+LGDTCKHKSHLFHSLTHYKLYLVSKV+AKI D LEPENFRGEGGP TSKKKKKRCLNFSENEFESLS+LL KADDLNGVKWGGR GVRGGHGKTFL+ GAASSILDWLSGEA QYGDL+LG XXXXXXXXXXXFHVGRGRRWRTVGSSGGRYG Sbjct: 21 ILNYVLTGLVQKLERACLIRSVCLCCSRLT-CPLLPF--------RKVWDGLRWDKHLPEHWDDPDAAAVAKQ---------EAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPHTSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLGD-------------LEGQRAGLGXXXXXXXXXXXFHVGRGRRWRTVGSSGGRYG 257
BLAST of mRNA_L-elsbetiae_contig779.16736.1 vs. uniprot
Match: D7G8T9_ECTSI (DUF4211 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T9_ECTSI) HSP 1 Score: 279 bits (713), Expect = 6.260e-77 Identity = 221/317 (69.72%), Postives = 234/317 (73.82%), Query Frame = 1 Query: 1444 EAAPAA--GMITRARRKSSMVNYRDMLRTDGVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------ECVGGRDEDADADDGFAENLHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------EGDASFSHAAFFHEMEQSQDGGVSSLSVGTMTFKEAFLFYVEYIARATQGDGVGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGTWRQDFRDTIMRYPHYGYLNVMGDESHVTDRCSACNRSNRTSVVAFLSGAEYEPNRV 2325 E APAA G TR RR+SSMVNYR+ML G SS XXXXXXXXXXXXXXX +C RDED D DD FA L D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DA FSHAAFF+EMEQS+DGG+SSLSVGTMTFKEAFLFYVEYIA+ATQGDG GEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCG+WRQDFRDTIMRYPHYGY +V GD +TDRCSACNRSNRTSV+AFLSG+EY+PNRV Sbjct: 492 EEAPAAATGRATRTRRRSSMVNYREMLHGKGTSSXXXXXXXXXXXXXXXXSGWDNDDEDESDGELDGKKSGDKCA--RDEDIDEDDSFAVTLKDDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNHRYNEPDDGDEDNFIDXXXXXXXXXXXXXDAFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLTDRCSACNRSNRTSVIAFLSGSEYDPNRV 806
BLAST of mRNA_L-elsbetiae_contig779.16736.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 7.440e-9 Identity = 59/217 (27.19%), Postives = 94/217 (43.32%), Query Frame = 1 Query: 1993 YVEYIARATQGDGVGEAFMKKYVAQPRIPEHA--RYGKAKEMVEKKLRISGESLC--GTWRQDFRDTIMRYPHYGYLNVMGDESHVT------------------DRCSACNRSNRTSV-VAFLSGAEYEPNRVWDGLRWDKHLPEHWDNPGAMAISKQARICFRMHRSSKATHFLGDTCKHKSHLFHSLTHYKLYLVSKVAAKINEDDDLEPENFR 2574 Y+E++A+A QG G G AFM+K+ ++ HA Y KA + E ++ ES+ G+W Q+F + YP G+ + E D C+AC+R R ++ +L+G+ G + + + E LG C++KSHL+H+L HYKLYLV KV ++ + PE+ R Sbjct: 940 YLEFLAKAVQGGGKGAAFMEKFDSK----RHAFTDYRKAIKNFEGRVCTIRESIAAGGSWNQEFMTAVTSYPFVGFHFGVSHEGPTEIDDEEEGQDIDWESLGRPDPCAACHRRQRENMSTMYLAGSR-------GGYKSKQKVRERLG--------------------------LGGRCRYKSHLYHTLLHYKLYLVCKVREHMD-TTGVGPEDLR 1118 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig779.16736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig779.16736.1 >prot_L-elsbetiae_contig779.16736.1 ID=prot_L-elsbetiae_contig779.16736.1|Name=mRNA_L-elsbetiae_contig779.16736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=508bp MITRARRKSSMVNYRDMLRTDGVSSSSDEAGDSSGDSSDDDAAATAAAAAback to top mRNA from alignment at L-elsbetiae_contig779:1178..17564+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig779.16736.1 ID=mRNA_L-elsbetiae_contig779.16736.1|Name=mRNA_L-elsbetiae_contig779.16736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16387bp|location=Sequence derived from alignment at L-elsbetiae_contig779:1178..17564+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig779:1178..17564+ >mRNA_L-elsbetiae_contig779.16736.1 ID=mRNA_L-elsbetiae_contig779.16736.1|Name=mRNA_L-elsbetiae_contig779.16736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3048bp|location=Sequence derived from alignment at L-elsbetiae_contig779:1178..17564+ (Laminarionema elsbetiae ELsaHSoW15)back to top |