mRNA_L-elsbetiae_contig7650.16581.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7650.16581.1
Unique NamemRNA_L-elsbetiae_contig7650.16581.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.590e-47
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 1
Query:    1 KERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 243
            KERKFKSLHQVLYELTNEL  YPGGATA+SIEAP SK PPR FCSVCGYHGLYTCTRCGSRFCSSKC EQHKETRCLKFAS
Sbjct:  111 KERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.960e-20
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   16 KSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 243
            K L Q +YE   E      G   L+  A  S  P R FCSVCGY GLYTCTRCG R+CSSKC+E HKETRCLKFA+
Sbjct:  116 KPLAQWVYEAGYERS---NGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.250e-17
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    7 RKFKSLHQVLYELTNELCVYPGGATA--LSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 237
            RK KSL Q ++E   ++   P  +T   LS     S  PPR FC VCG    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:  112 RKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A3M7RAX1_BRAPC (Zinc finger HIT domain-containing 1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RAX1_BRAPC)

HSP 1 Score: 77.8 bits (190), Expect = 5.570e-16
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   88 SIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 243
            SI  PD+K P R FCSVCG++  YTC +CGSR+CS+KC + HK+TRCLK+ +
Sbjct:  140 SISVPDTKFPKRKFCSVCGFYSNYTCVQCGSRYCSTKCLQTHKDTRCLKWTA 191          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A8J8NDU2_HALGN (HIT-type domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NDU2_HALGN)

HSP 1 Score: 75.1 bits (183), Expect = 7.110e-16
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   85 LSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFA 240
            LS+ A  SK P R FCSVCGY+  Y CTRCG R+C+ +C E H+ETRC+KFA
Sbjct:   46 LSVAARPSKFPVRFFCSVCGYNSKYQCTRCGLRYCTMRCGETHRETRCIKFA 97          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A078AGH6_STYLE (HIT-type domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AGH6_STYLE)

HSP 1 Score: 77.4 bits (189), Expect = 8.820e-16
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   16 KSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFA 240
            K  +Q  Y++  +L         LS+ A  SK P R FCSVCGY+  Y CTRCG R+C+ KC E H+ETRC+KFA
Sbjct:  126 KIFYQEFYDVEQQL----NFQNYLSVAAKPSKFPRRFFCSVCGYNSKYQCTRCGLRYCTMKCGETHRETRCIKFA 196          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A0R3UHX5_MESCO (HIT-type domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UHX5_MESCO)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-15
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   73 GATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 243
            GA+  +   PDS+ PPR FCSVCG+ GLY C  CG+R+CS KC + H +TRCLK+ +
Sbjct:  118 GASYFTAAVPDSRFPPRKFCSVCGFPGLYVCVVCGTRYCSIKCRDVHNDTRCLKWVT 174          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A0R3WN66_HYDTA (HIT-type domain-containing protein n=3 Tax=Taeniidae TaxID=6208 RepID=A0A0R3WN66_HYDTA)

HSP 1 Score: 75.9 bits (185), Expect = 1.290e-15
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   10 KFKSLHQVLYELTNELCVYPGG---ATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 243
            KFK   ++L  L  E     GG   A+  +   PDS+ PPR FCSVCG+ G Y C  CGSR+CS KC + H +TRCLK+ +
Sbjct:   72 KFKKTFELL--LDEEYQATKGGQVGASYFTAAVPDSRLPPRKFCSVCGFLGAYVCVVCGSRYCSIKCRDVHNDTRCLKWVA 150          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.150e-15
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    7 RKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 237
            RK KSL Q+++E   +         + +++ P  K+PPR FC+VCG+   Y C RCGS+FCS +C +QHKET CLKF
Sbjct:  114 RKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188          
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Match: J9IU22_9SPIT (HIT-type domain-containing protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IU22_9SPIT)

HSP 1 Score: 76.6 bits (187), Expect = 2.880e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   85 LSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFA 240
            LS+ A  SK P R FCSVCGY+  Y CTRCG R+C+ KC E H+ETRC+KFA
Sbjct:  173 LSVAAKPSKFPRRFFCSVCGYNSKYQCTRCGLRYCTMKCGETHRETRCIKFA 224          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7650.16581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J5_ECTSI1.590e-4791.36HIT-type domain-containing protein n=2 Tax=Ectocar... [more]
W7TJ72_9STRA6.960e-2059.21Zinc finger, HIT-type n=1 Tax=Nannochloropsis gadi... [more]
A0A485KXM9_9STRA7.250e-1751.90Aste57867_13128 protein n=1 Tax=Aphanomyces stella... [more]
A0A3M7RAX1_BRAPC5.570e-1659.62Zinc finger HIT domain-containing 1 n=1 Tax=Brachi... [more]
A0A8J8NDU2_HALGN7.110e-1661.54HIT-type domain-containing protein n=1 Tax=Halteri... [more]
A0A078AGH6_STYLE8.820e-1649.33HIT-type domain-containing protein n=1 Tax=Stylony... [more]
A0A0R3UHX5_MESCO1.100e-1554.39HIT-type domain-containing protein n=2 Tax=Mesoces... [more]
A0A0R3WN66_HYDTA1.290e-1546.91HIT-type domain-containing protein n=3 Tax=Taeniid... [more]
A0A6G0X8S1_9STRA2.150e-1546.75HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
J9IU22_9SPIT2.880e-1563.46HIT-type domain-containing protein n=2 Tax=Oxytric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7650contigL-elsbetiae_contig7650:8479..9420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D7G8J5
Preferred nameZNHIT1
KEGG koko:K11663,ko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
EggNOG free text desc.regulation of histone deacetylation
EggNOG OGsKOG3362@1,KOG3362@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816850.2509525-CDS-L-elsbetiae_contig7650:8478..86791622816850.2509525-CDS-L-elsbetiae_contig7650:8478..8679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7650 8479..8679 -
1691683860.4994724-CDS-L-elsbetiae_contig7650:8478..86791691683860.4994724-CDS-L-elsbetiae_contig7650:8478..8679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7650 8479..8679 -
1622816850.2642605-CDS-L-elsbetiae_contig7650:9375..94201622816850.2642605-CDS-L-elsbetiae_contig7650:9375..9420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7650 9376..9420 -
1691683860.5217535-CDS-L-elsbetiae_contig7650:9375..94201691683860.5217535-CDS-L-elsbetiae_contig7650:9375..9420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7650 9376..9420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7650.16581.1prot_L-elsbetiae_contig7650.16581.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7650 8479..9420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7650.16581.1

>prot_L-elsbetiae_contig7650.16581.1 ID=prot_L-elsbetiae_contig7650.16581.1|Name=mRNA_L-elsbetiae_contig7650.16581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
KERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYH
GLYTCTRCGSRFCSSKCSEQHKETRCLKFAS*
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mRNA from alignment at L-elsbetiae_contig7650:8479..9420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7650.16581.1 ID=mRNA_L-elsbetiae_contig7650.16581.1|Name=mRNA_L-elsbetiae_contig7650.16581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig7650:8479..9420- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAACGCAAGTTCAAGAGCCTGCACCAGGTCCTCTACGAACTGGTAAG GCTGCTGTCTCTCTCTTTCTCTCTCTCTTGTCTCTCGTGTATATAGCCCT TCGGAGGCACACTGCTGTAGACGGACTTATGTTTTTTGAGTGGTCGCTTG TTGCCGTGGTGGAGCTATTTTGCCGCTTTATTCGTTCGCGTGAGGGATAG AGGGCGCGATGACCCATGTCCTGCGCAGCAATCAATTTTCCCTCAGGGGC GCTCTTGAGCAGCATGGAGCTTACTATAGTATTTACCCGCAAATTTAGTT TATGACCGAAGCCTTTTGTGATGTTGTGATGGAGAAGCTATCACAGCCTT GTCGCATTTCACGCAAAAAAAAGGGTTCACAACGGGGGGGGGGGGGGGGT ACCCCAGGCCCGGAGGGCCCCCACCCGCTCCCCACGGCGGCTCTCTCCCC CCGTGCCACCCCCCCCCTCCCCNNNNNNNNNNTTTTATAGTAAAAAAAGA AAAATTCACAGACATAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGTACCGCAGGCAGTGAGTGCCCCTGCCCGCTCC ACATGGCGGCTTTCTTCCGCCGTGCCCGCCCGCCGCTCCCCTGCTTTGCC GACGCGGCGTGTCTTGATAAAAAAATCAACTTCCCCCAATTTCCCGTTCT TCGGTCTGGTTGTGTTTGTCTTTGTTTCCTTCCCTCCCCAGACGAACGAG CTCTGCGTGTACCCCGGCGGAGCGACGGCCTTGAGCATCGAGGCGCCTGA TTCGAAGCAGCCGCCGCGGCCGTTCTGTTCCGTGTGCGGCTACCACGGGC TGTACACGTGCACGCGCTGCGGGTCTCGTTTCTGCAGTTCGAAGTGCTCC GAACAGCACAAGGAGACCCGGTGCCTCAAGTTCGCGTCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7650:8479..9420-

>mRNA_L-elsbetiae_contig7650.16581.1 ID=mRNA_L-elsbetiae_contig7650.16581.1|Name=mRNA_L-elsbetiae_contig7650.16581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig7650:8479..9420- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAACGCAAGTTCAAGAGCCTGCACCAGGTCCTCTACGAACTGAAGGA
ACGCAAGTTCAAGAGCCTGCACCAGGTCCTCTACGAACTGACGAACGAGC
TCTGCGTGTACCCCGGCGGAGCGACGGCCTTGAGCATCGAGGCGCCTGAT
TCGAAGCAGCCGCCGCGGCCGTTCTGTTCCGTGTGCGGCTACCACGGGCT
GTACACGTGCACGCGCTGCGGGTCTCGTTTCTGCAGTTCGAAGTGCTCCG
AACAGCACAAGGAGACCCGGTGCCTCAAGTTCGCGTCGTAGACGAACGAG
CTCTGCGTGTACCCCGGCGGAGCGACGGCCTTGAGCATCGAGGCGCCTGA
TTCGAAGCAGCCGCCGCGGCCGTTCTGTTCCGTGTGCGGCTACCACGGGC
TGTACACGTGCACGCGCTGCGGGTCTCGTTTCTGCAGTTCGAAGTGCTCC
GAACAGCACAAGGAGACCCGGTGCCTCAAGTTCGCGTCGTAG
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