mRNA_L-elsbetiae_contig7350.16224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7350.16224.1
Unique NamemRNA_L-elsbetiae_contig7350.16224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 2.620e-116
Identity = 183/218 (83.94%), Postives = 198/218 (90.83%), Query Frame = 1 
Query:    1 RWFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGSRFKCPTCPVEQTENETMALTL 654
            RWFEKRR ALEGVGS+LEFQLARLRFLRFL+SADP Q REAM+YAR+ + PV+ GH RE +ELMG L +SG+LE SPYSHLLS  LW R KESVAVD SR+SGLSRESILSVAFRAG+LALPTL+KMAAVVRGSN EW+GMRELPLEVPLP GLRYHSMFSCPV+REPSTLDNPPVLLKCGHAVLRSSVSRLAR+GSRFKCPTCPVEQ ENETM LTL
Sbjct:  262 RWFEKRRKALEGVGSSLEFQLARLRFLRFLESADPGQRREAMMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRISGLSRESILSVAFRAGILALPTLVKMAAVVRGSNLEWNGMRELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 479
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BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: D8LT28_ECTSI (RING-Gid-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 2.880e-116
Identity = 180/218 (82.57%), Postives = 196/218 (89.91%), Query Frame = 1 
Query:    1 RWFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGSRFKCPTCPVEQTENETMALTL 654
            RWFEKRR ALE VGS+LEFQLARLRFLRFL+SADP + REAM+YAR+ + PV+  H RE +ELMG L +SG+LE SPYSHLLS  LW R KESVAVD SRVSGLSRESILSVAFRAG+LALPTL+KMAAVVRGSNQEW+GM+ELPLEVPLP GLRYHSMFSCPV+REPSTLDNPPVLLKCGH VLRSSVSRLAR+GSRFKCPTCPVEQ ENETM LTL
Sbjct:   36 RWFEKRRKALERVGSSLEFQLARLRFLRFLESADPGKRREAMMYARERVMPVAGRHMRELQELMGSLLWSGNLEASPYSHLLSLELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHVVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 253
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A0D2WQV5_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQV5_CAPO3)

HSP 1 Score: 174 bits (440), Expect = 4.880e-45
Identity = 93/212 (43.87%), Postives = 134/212 (63.21%), Query Frame = 1 
Query:    1 RWFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRG---SNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGSRFKCPTCPVEQT 627
            RW  + R ALE +GS+LEF+L +L FLR L+       R+A+ YAR    P S  H  E + LMGCL + G    +PY  L+ S  W     +   D   + G++ +S L V+F AG  ALPTL+KMA+V++G   S+  W    ELP+E+ L    ++HS+F+CPV+RE ++ +NPP+++KCGH V + S+ RL+++G RFKCP CPVEQT
Sbjct:  200 RWASENRQALERIGSSLEFKLHKLEFLRRLQI----DRRDALQYARVQFVPFSHSHLNEVQRLMGCLLYYGRAPPTPYMELVDSIHWTEIAHAFTRDCCAMLGMTYDSPLFVSFLAGCAALPTLLKMASVMQGRGASSTLWTSKDELPVEIELGKDSQFHSVFACPVSREQASPENPPMMMKCGHVVCKLSLERLSKNGGRFKCPYCPVEQT 407
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A015LDZ0_RHIIW (Ubiquitin-protein ligase RMD5 n=8 Tax=Glomeraceae TaxID=36751 RepID=A0A015LDZ0_RHIIW)

HSP 1 Score: 171 bits (432), Expect = 1.550e-44
Identity = 89/215 (41.40%), Postives = 127/215 (59.07%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGSRFKCPTCPVEQTENETMAL 648
            W   +   LE  GSTLEF+L R R+++ L      +  EA++YA++        H  + + LM  LAFS  L TSPY  LLS  LW   +     D   + G+S ES L ++   G  ALPT++KMA +++    EW    ELP+EVPLP  +RYHS+F+CPV++E ST  NPP++L CGH +   S+++L+R  SRFKCP CP E   N+ + +
Sbjct:  140 WARTKSKELEKRGSTLEFELHRQRYVQLLID---NRREEALVYAKKKFPLFHSRHIFDIKRLMCALAFSNRLSTSPYKDLLSPDLWIELQNKFMRDFCNLLGMSSESPLYISVTVGATALPTILKMATIMKEKKNEWSQQDELPVEVPLPDYMRYHSIFACPVSKEQSTEKNPPMMLPCGHVICHESLNKLSRGNSRFKCPYCPHESIANQALRI 351
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BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A397JTR3_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JTR3_9GLOM)

HSP 1 Score: 169 bits (428), Expect = 1.150e-43
Identity = 83/214 (38.79%), Postives = 133/214 (62.15%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGS-RFKCPTCPVEQTENETM 642
            W + +R  LE  GS+LEFQL RL F+++L     Q+  EA++YA+ +       H +E + LMG L +   L +SPY+  LS   W   +++   D   + G++ +S L ++   G  ALPT+IKMA +++    EW    ELP+E+PL   +RYHS+F+CPV++E ST +NPP+++ CGH + + S+++L+  G+ RFKCP CP+E   N+ +
Sbjct:  168 WAKSQRDELERRGSSLEFQLHRLHFIKYLLE---QRRDEALMYAKTNFEYFQARHMKEIKRLMGALIYINRLSSSPYADFLSKDAWTDIQQTFTRDFCNLLGMACDSPLYISVTVGATALPTIIKMATIMKEKKNEWSQQNELPVEIPLTDDMRYHSIFACPVSKEQSTEENPPMMMPCGHVICKESLTKLSSKGNGRFKCPYCPIESMVNQAV 378
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A5J4Z334_PORPP (Protein RMD5-like A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z334_PORPP)

HSP 1 Score: 170 bits (431), Expect = 1.210e-43
Identity = 89/213 (41.78%), Postives = 133/213 (62.44%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQ--EWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGSRFKCPTCPVEQTENE 636
            W    R  LE + STLEF+L  + F+R L   D      A+ YAR+H    ++    + +  MG L ++  LETSPY+ L+S ++W++  E+ + D  R+ G++++S L V   AG LA+P L K + +    N+  EW G   LP+E+PLP   R+HS+F+CPV+RE ST DNPP++L CGHA+ ++S+ RL R  SRFKCP CP EQ+ ++
Sbjct:  214 WVTAHREQLEAIESTLEFRLHSVEFIRLLLQRD---RAGAVKYAREHFGRFAKSSLPDIQRHMGFLLYATRLETSPYAPLVSETMWSQVIETFSRDSCRILGMAQDSALHVVVSAGTLAIPVLSKASRIRTPMNESSEWTGADHLPVEIPLPQEFRFHSIFACPVSREESTPDNPPMILFCGHALCKNSIGRLPRGNSRFKCPYCPSEQSPSK 423
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A7S0NXI1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXI1_9EUKA)

HSP 1 Score: 163 bits (413), Expect = 4.380e-43
Identity = 95/229 (41.48%), Postives = 133/229 (58.08%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRP--------------VSQGHD----REFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQE-WDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGS--RFKCPTCPVEQT 627
            W  + R  L   GS L F LARLR+++ +++       EA++YAR  L+P              +S  HD    ++ + LMGCLAF+  +  SPY+HLL  SLWA A + ++VDG  + GL   S L+    AGV ALP L K++ V+ G   E W   R+LP+E+P      +HS+FSCPV++E +T DNPP+LL CGH +   ++ +LAR     RFKCP CPVE T
Sbjct:    8 WASRHRQQLRSTGSPLPFMLARLRYMQLVQAGSAL---EALVYARTRLQPEALAAEGELSGSLALSTTHDSSPSQQMKLLMGCLAFAQRVPASPYAHLLDPSLWAAAAQRLSVDGHGLLGLPPTSALAACVEAGVAALPRLHKLSTVLEGKYVETWKASRQLPIELPSTQAEAHHSIFSCPVSKEAATPDNPPMLLPCGHVLSLGAIVKLARGSRTVRFKCPYCPVEST 233
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A6T8PEU0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PEU0_HEMAN)

HSP 1 Score: 166 bits (419), Expect = 2.970e-42
Identity = 86/217 (39.63%), Postives = 131/217 (60.37%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARSGSRFKCPTCPVEQTENETMALTL 654
            W  +  A LE +GS + F + R+ +L+ +K     ++ +A+ +AR           RE + LMGCLAF G L+TSPY+       W R  + +A DGSR+ GL R+  L V   AGV ALP+L+K A+V++G   EW     LP+E+ L    +YHS+F CPV+RE ++ DNPP++++CGH +   S+ +++R  +RFKCP CPVE + + +  L L
Sbjct:  183 WAARNAAGLEAIGSDVGFGIVRMEYLQLVKEG---KVVDAVRHARGSFDRYMPARLREVQRLMGCLAFVGRLDTSPYASFFDEGEWDRLSQRLAGDGSRLLGLPRDLPLGVCVEAGVKALPSLLKFASVMQGRIGEWGSKTALPVEIDLGPERKYHSVFVCPVSREQASADNPPMMMQCGHVLCEHSLKKVSRGAARFKCPYCPVEVSVHGSTRLHL 396
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A261Y3R7_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y3R7_9FUNG)

HSP 1 Score: 164 bits (414), Expect = 5.150e-42
Identity = 84/217 (38.71%), Postives = 131/217 (60.37%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLA----RSGSRFKCPTCPVEQTENETM 642
            W +  R AL    S LEF L  L+++ +L++    Q  +A+LYAR+     +  H  E + L+  + F+  L TSPY+ L+S+  W   +     +   + G+S ES L V+   G +ALPT+IKMA +++    EW    ELP+E+PLP  LRYHS+F+CPV++E +T +NPP+++ CGH + + S+S+L     R+ S+FKCP CP E T N+ +
Sbjct:  132 WAQSHREALRKKESNLEFNLHNLQYMTYLQA---NQTLDALLYARRWFPDFTARHLPEIQRLLAAICFTDRLATSPYADLVSNIHWQDIQHDFTKEFCSLLGMSAESPLFVSVMVGTIALPTIIKMATIMKDKKTEWSQQDELPVEIPLPENLRYHSIFACPVSKEQATEENPPMMMPCGHVICKESLSKLGKGSRRNSSKFKCPYCPSESTPNQAV 345
[Close]
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Match: A0A7S1C6P1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P1_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.390e-42
Identity = 86/218 (39.45%), Postives = 134/218 (61.47%), Query Frame = 1 
Query:    4 WFEKRRAALEGVGSTLEFQLARLRFLRFLKSADPQQMREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLWARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQEWDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRSSVSRLARS-GSRFKCPTCPVEQTENETMALTL 654
            W  ++R AL  +GSTLEF L  L F++ L+   P+  +EA+L+AR+H    +       + +M    ++G LE SPY+ L S       + ++  D   + GL   S L  + RAG++ LP L+K+++V++ +    + + E+P+EVPLP  L++HS+F+CPV+RE +  DNPP+LL CGH V + ++ RL+ S G RFKCPTCP  QT +E + L L
Sbjct:  207 WASRQRGALIALGSTLEFDLHCLAFVQKLRRPAPRGRQEALLHAREHFPHFADAQMPTIKRMMAASLYAGRLEASPYADLASPGRVRAVERAIVRDNCLLHGLPESSPLETSLRAGLMGLPALLKLSSVLKMTGGSLESLTEVPVEVPLPESLQFHSVFACPVSREQTQPDNPPMLLACGHVVGKDALERLSASRGGRFKCPTCPKVQTSSEALQLRL 424
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7350.16224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8M5_9PHAE2.620e-11683.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT28_ECTSI2.880e-11682.57RING-Gid-type domain-containing protein n=1 Tax=Ec... [more]
A0A0D2WQV5_CAPO34.880e-4543.87Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A015LDZ0_RHIIW1.550e-4441.40Ubiquitin-protein ligase RMD5 n=8 Tax=Glomeraceae ... [more]
A0A397JTR3_9GLOM1.150e-4338.79Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A5J4Z334_PORPP1.210e-4341.78Protein RMD5-like A n=1 Tax=Porphyridium purpureum... [more]
A0A7S0NXI1_9EUKA4.380e-4341.48Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6T8PEU0_HEMAN2.970e-4239.63Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A261Y3R7_9FUNG5.150e-4238.71Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A7S1C6P1_9STRA5.390e-4239.45Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7350contigL-elsbetiae_contig7350:2922..8527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue3.2e-79
Seed eggNOG ortholog2880.D8LT28
Preferred nameRMND5A
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5109@1,KOG2817@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-08_003890.1
Exons5
Model size1681
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.394676-UTR-L-elsbetiae_contig7350:2921..39451622816818.394676-UTR-L-elsbetiae_contig7350:2921..3945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7350 2922..3945 -
1691683836.9082813-UTR-L-elsbetiae_contig7350:2921..39451691683836.9082813-UTR-L-elsbetiae_contig7350:2921..3945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7350 2922..3945 -
1622816818.4568136-UTR-L-elsbetiae_contig7350:6715..67331622816818.4568136-UTR-L-elsbetiae_contig7350:6715..6733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7350 6716..6733 -
1691683836.9728105-UTR-L-elsbetiae_contig7350:6715..67331691683836.9728105-UTR-L-elsbetiae_contig7350:6715..6733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7350 6716..6733 -
1622816818.4674585-UTR-L-elsbetiae_contig7350:8434..85271622816818.4674585-UTR-L-elsbetiae_contig7350:8434..8527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7350 8435..8527 -
1691683836.9844067-UTR-L-elsbetiae_contig7350:8434..85271691683836.9844067-UTR-L-elsbetiae_contig7350:8434..8527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7350 8435..8527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.4095104-CDS-L-elsbetiae_contig7350:3945..40961622816818.4095104-CDS-L-elsbetiae_contig7350:3945..4096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 3946..4096 -
1691683836.9224095-CDS-L-elsbetiae_contig7350:3945..40961691683836.9224095-CDS-L-elsbetiae_contig7350:3945..4096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 3946..4096 -
1622816818.422839-CDS-L-elsbetiae_contig7350:4645..48061622816818.422839-CDS-L-elsbetiae_contig7350:4645..4806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 4646..4806 -
1691683836.9314227-CDS-L-elsbetiae_contig7350:4645..48061691683836.9314227-CDS-L-elsbetiae_contig7350:4645..4806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 4646..4806 -
1622816818.4341593-CDS-L-elsbetiae_contig7350:5649..58111622816818.4341593-CDS-L-elsbetiae_contig7350:5649..5811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 5650..5811 -
1691683836.9432955-CDS-L-elsbetiae_contig7350:5649..58111691683836.9432955-CDS-L-elsbetiae_contig7350:5649..5811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 5650..5811 -
1622816818.4449472-CDS-L-elsbetiae_contig7350:6643..67151622816818.4449472-CDS-L-elsbetiae_contig7350:6643..6715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 6644..6715 -
1691683836.9605699-CDS-L-elsbetiae_contig7350:6643..67151691683836.9605699-CDS-L-elsbetiae_contig7350:6643..6715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7350 6644..6715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7350.16224.1prot_L-elsbetiae_contig7350.16224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7350 3946..6715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7350.16224.1

>prot_L-elsbetiae_contig7350.16224.1 ID=prot_L-elsbetiae_contig7350.16224.1|Name=mRNA_L-elsbetiae_contig7350.16224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MREAMLYARQHLRPVSQGHDREFRELMGCLAFSGSLETSPYSHLLSSSLW
ARAKESVAVDGSRVSGLSRESILSVAFRAGVLALPTLIKMAAVVRGSNQE
WDGMRELPLEVPLPAGLRYHSMFSCPVTREPSTLDNPPVLLKCGHAVLRS
SVSRLARSGSRFKCPTCPVEQTENETMALTL*
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mRNA from alignment at L-elsbetiae_contig7350:2922..8527-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7350.16224.1 ID=mRNA_L-elsbetiae_contig7350.16224.1|Name=mRNA_L-elsbetiae_contig7350.16224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5606bp|location=Sequence derived from alignment at L-elsbetiae_contig7350:2922..8527- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGGTTCGAGAAGCGACGGGCGGCGTTGGAAGGAGTAGGCAGCACCTT
GGAGTTCCAGCTCGCCCGGTTACGGTTCCTCCGCTTCTTGAAGGTGTGGG
GATAACGAACGGCTTATTATTGTAGGGGGTCGATTGTTTTTGTGGGAACC
GTGGTGTGCGGGGCTGTGCTGCTGCTTGCCGCAGGCCAGGTGTGTGAGGC
AGGGGAGACCGCAGATGGAGTTCTCCCGGGGCAGTGCGGTGCGTGTTCGT
TGGCGGCAGTTATTTTCATGGAGTATTGTTTTAACTCGCACTTGAGAAAG
AAGAGTGTTTTGGTTGTTTATCACCTGTTTGCTTGTTTTTCCCTACGCCG
GCCGGTAACCGGTTTCGGGCCGAACGAACAGATTTTCCAGACGTGGGAAC
CTCCTGTTGCTCTCCAGCTTGTTTGCACCTTGGGTTTCCGCTTTCCGACC
CCCGCAGCAACGCTGCGGTACCCCCCCCCCTCTCCCCTTATTTCGGAAAG
GCTGGCAGCCCTCGGGGCTCCTCGGGGCTACAATAGCTTGGACATTCTAT
ATAGCACGGTAGTTTCTACGTGGTGGGTCGTGACAGACGGCTGGCTTGGA
CACGGCGGTGCACGCCGAGATGAGATACACAGGGGCTGTCTCTGGTAGTT
TGCGAGAGGGCCATTTTGAGATATTTAGTGATGCCAGACTATCTATCTGT
GCCTGATATTTTTGTGTTTTGTTTGTGTGTGTGTGTGTTTTCGTCCCATT
TATTCGGGGCGCCTGCCACACGTTTCGATGTGTGTACAACATGGACGTTG
CGGTGCTGCTTCTTTGTACAGCATGACGTATCCGCCGGGGTCACGCAGGA
GGGGGCGAACACTGCAGCTTTCTTCTTTTTATTTTCGTTTTTCTGCCCCA
CCTTCCTCCTGCCGTGCTTTGCCTTTGGGTTTTATCGCTAAATATGCGGA
CCCTTCCTTCGGGTACATTTTTTTTTTCATAATTGAGAGTGTACCTCCTC
TAGGTTTAGTCACTAGTCTGTGACTACGGGCCTGCATCCACCGCGTCAGT
GTTGGATTGGTACGGGCTCATGGAAGGTACTGGAATGAGAGATCGGAACC
GTTTTTTAATGTTACTACTGTTAAGACAACAGCAACAACAACAGCAACAG
GGAGGAAACCAAGCCGTCGAAAAAACTACAATTAACTGACCGCCGCGCGG
GACAGGCCTAGAGCGCCACCACACGGTGCCCTGAAGGCGCTCGGTACCTG
CATACATACCACCTAAATACCTGCCCGAGGCGTCTGGGATTGGGCAGAGA
TCTGAAAACGCCCACTCCGAGAAAGCACACACCAAGCACCCGGCAGCCGG
CCCCACCACCAGGCCGGTGGTCTGTAGGGGCGGCAAAAGCTATGGAATGG
ATGGATGTACTTGGATATGTCCCACCTTTTTGAGGGAATGAGCGCCCTGC
CCCCCCCCCCCCCCCCCCCCCCCCCGCCCTCCTTTTTTTTTTTTTTCTTG
TTTCTTCTCCTCCTCCTCCCTCTTCTTTTCTNNNNNNNNNNGGGGGGGGA
AAAGCTTTTGGATGGATGGATTTTCTTTGGATTGTCCCCCCCTTTTTGGG
GAAAGGGCGCCCCGCCCCCCCCCCCCCCCTGCTTTCTTGGATCTACTTTT
TGCTTTCGAGGCTTTCCGCGCCCTTCCTCTCGTTCGTTGAGCCATATCGT
ATCTCTCTCTGTCTGACTATCTCTCTCTCTCTCTCTCTGTGTGTGTCTGT
CTCTATTATTTGTCTCTTTTTTTTGTCTCCCGTTCGTGGCGCAGAGCGCG
GACCCGCAGCAGATGCGAGAAGCGATGCTGTACGCTCGGCAACACCTGCG
GCCGGTCTCACAGGGCCACGACCGAGAATTCAGGGTGCGTGCTTTTAAAA
GGCCATGGGTGTCTTTTGCAGTCCCCTCCCCGGGGTACTACTGTAGACCA
TCGATGTCAATGACCCACCCGCTGCCATGGACGTTTTGTTTTGTGCCTCT
CGGGGGGGGGCGGGACTCGCACTGCCGGGGGCTGGCTTCCCAGAAACGTG
TTTTCTCCTAAAAGAGCCTCGATCTAGTTGGAAACGAAGCCTTCCGAGTG
GGGGGCTGGGTTTCAACGCGCTATGTAGCTTTGCGAAAGAGAGACGGACA
TGCTTCGATGTTGGTACTTCGTATCTGGTCAATATATCTACATCCCAGGC
ACTCCGTACGAGCAGCAGCAAAGCACGCGAAGGCTTTCTAGACCTTCAGT
CTGATTTCCACATTATTTCGCTTCGGTGCTTCGTTTTTTTTTTTGTAAAA
ATGTGGACAGATACGCCACAATAGATGGGGGACGAAAACACAACAGCAAC
ACACACACAAACACTCGTTTTTTTGTGGGAAAAAAAAAACAGTCTTTCCG
TTATACTCCTATTTAGAGCGTCCTCCACACCCGCCAACATTACACTTTGC
CATGTGTGATACGGTCGTCTCGAACTCGAATGTACGCAGGCGGGAGAGAG
ACCCCATCAACTACTCTTTCATAGTAAGCGGTGTGTATGTAGATATGTAT
GTACCAACAAAAAATGCTCTGTAAATACGCAAGCATAGGTCTTTCCCCCC
ATTATCATCCCCCATTCTTCATCGGTCTCTATCGATCATCCTTGCCGTCA
CCGCTCTTCCGATTTTGTTTAAATTTTTCTGCAAATGAACCGCACGAAAC
GGCGAAAACAATGCAGGAGCTGATGGGGTGCCTGGCCTTTTCCGGGAGCC
TGGAGACGTCTCCGTACAGCCACCTCCTGTCGTCGTCGCTCTGGGCGCGG
GCGAAGGAATCCGTGGCGGTCGACGGCAGTCGCGTGTCCGGGCTGTCAAG
GGAGAGCATTCTGTCCGTCGCGTTTCGGGTGAGTGATACTCGGCACTCGG
AGCCCCCGGAGATGGAGTGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGGCAGGGGGGGGAGCAAAAAACATACATTCTTATGTGG
AACTGCGTTTTGACGCTTTGCTGCTCCAATTTCACGCTCGCCGAATGCGG
GCTATCTTGGGTGGCAACTTTTTGTTTTGTTTTGTGCTGTTTGCTGATGG
TGGTGGTGGTGGTAGTGGTGGTGGTGTTGGAATGTTGCTGCTGTCGTTTT
TGTCGCTGTTGTGCTGCTGCTGCGTGCGGTGTGCTTATGAATCCAGCGAG
CTCAGCGCTCGGCCGGGCGGTGACCCCTGTGTCCTTCTCTGGCTACACAC
GGTGCGTTCTTGTTTTTGTTCTTCACATTTATTTCCAGTGCTCGATGGGC
TCCTTGTCACGAGGGCATCTTGCCAGAGTACTGAACCACCATATGTCACA
CATAAGGGTTCATCTCCCTGAGGCCCCCACTCCCCCCTTCTGCGGTGCTT
GCCTACTAAGATTGTTGTCGCGAGAAAAGGGTTCAGCCGCCCCTTTCCCT
CGTCGACGGTGAGGTCGAAGTACGGTGCGCTTGGTCTAGGGGAAATATTA
CGTCACGACGTATGTATGTGGAATACCGACTGAATCTCATGGAGTCCCGT
CTCAATGTGGGTTAGGTTCCATTTTTGATTAACTCTGTGTCTCTTTCATA
GCGGGGTCATCATCAAATGTTTATTTCGCGCCGCGCCGCGCCGCGCCGCG
CCGCGCCCGTCCCGCGCCCCTCGCCCCGCGCCCCGCGCCCCGCGCCCCTG
GCTCGGAACGCGAGAGAGCAGGCCGGGGTGCTAGCGCTGCCGACGCTGAT
CAAGATGGCGGCCGTGGTGCGGGGCAGCAACCAGGAGTGGGACGGGATGC
GGGAGCTGCCGCTGGAGGTGCCGCTCCCGGCGGGCTTGCGCTACCACAGC
ATGTTCTCCTGCCCGGTCACCAGAGAGCCAAGGTGCGCGTGTGGGTTCGG
TCGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTTTTTGTTTTTGGGTTG
GGCGCGATGGACAGCGTAGGCAGTTAGTTCACTGATAGAGTTCTTAGAAA
CCGAGGAGAACAGCTGCTGAAGGAATGTTTCCAAGGGGATGGAAATTAAA
AGATCCCGGGCGTTTCAAGGAGCTGTCTGCCGTGTGGGGAAAGGGGGGGG
GGGGGGCGCTACGCACGCTCGCCCTCCCCGCCGTACCAGTCGCCCCCGCC
CTCGCTCCGCGTCGAGGCTGCCGCCAAGGATTAGGATTCCTCGACGGAGA
GAAGCAGGCGTTCAGTTTTGACAAACTCACGATCACGCAAGGCAAAATTC
AACCACCCCCATTTTGTGTACAACTGCCTACAAAAATAACAGTGGTCTAT
ATTTATTTACATAAATAGTCCAACCTGTGAAAAAATCACCATTTTTTTTT
TAAAGTTTTTCAAGTTTTTTTCCTTTCGCGACCCCCCCCCTCAACCCCCA
CTCGCGGCGCCGTGCGCACCAAAACAAGCAGCACGCTGGACAACCCGCCG
GTGCTCCTGAAGTGCGGCCACGCGGTCCTGCGTTCTAGCGTGAGTCGCCT
CGCGAGGAGCGGTTCTAGGTTCAAGTGCCCTACCTGTCCGGTGGAGCAGA
CGGAGAACGAGACCATGGCTCTCACGCTCTGAGATGAAGGGCGTGGTTTG
GTCTCAACTTGACCCTGCTCGTCGCAAGTACTTAAAAGCATTGAGTGTCT
CGGGGCATCTGTTATCTTGTGCGACAATGTTTTTTTTTTGTGTGTGCGGG
TGTAGCTAGCTATGTTGTAGCTAGCTTTCGCGCTTGCGGTCGGGTTTACG
TGAGATGTGTTTTGTGTATATGTATGTATGTAGCTCTGTGAAAATCGAGT
TCCTAGGGTGTGCGCGTGGAGCGTGTTTTCCTGTTTTGGTCAATGCACAA
GGCCGGATAATGTCACGGGTTAACTAGCTGGCGTGCAGCTATTGTCAACC
CGCGTCTGTACAGCGTCCTCAGCATTTTCGGGAGGGAGCTACATGTTGTG
TACACGCGTGTGATCAAGTTGGTGCAAGTGAGATCGGTTTGCTTCCCCGG
TCGTCCTTGAGTTGATCTGCGTATGTGTAACTGTCTGTTCACACCGTTCT
TGGTCGCAAATTTGTTCCCGCTGGACTATGTAGTTTTGTTCTCGGAGGCT
TGTTGTCGGGGCGGCGCATGGGAGAGAGGTGGTGGTGGCCCCAAACCATC
GGGTGACCCCGCCAAAATATTAAAAAACATAGATACTTAAATGTGATTTT
TTTCAGACTGTGTTTGTATTTATCAGCACTTTGTTTTCCCCGTCTGTGGT
GTGGGGTGCCGGGCTTCGAAACATTTTGTTCCCCGGACCCCGCCAAGGCC
AGGGATTGGAAGGGAGTGCTTTATTCCTCCTTCACGCGAGTCTGCCTGCA
CACATCCTCTAGAGATCGAGCACCGTTCCTACCCACCGCTCCTGCTCTGA
ATATTGGCTTCTTACGCTCTCATGTGGACTGCTTTTGTAGCTAGACATCT
TTCTGCCTCAGAGGGGGGCAGACACCGCGGAAATACTTTTGTACAACGCG
CCTTTCTTTGCAAACGGTGAGCACCAGCCGCGCTGGGGTGACTACTTGTG
TTTCTTTGACGTGATGGCATTGTGCGAAGTACTACTGTTTGCACGTGAAA
ACACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7350:2922..8527-

>mRNA_L-elsbetiae_contig7350.16224.1 ID=mRNA_L-elsbetiae_contig7350.16224.1|Name=mRNA_L-elsbetiae_contig7350.16224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig7350:2922..8527- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGAAGCGATGCTGTACGCTCGGCAACACCTGCGGCCGGTCTCACA
GGGCCACGACCGAGAATTCAGGATGCGAGAAGCGATGCTGTACGCTCGGC
AACACCTGCGGCCGGTCTCACAGGGCCACGACCGAGAATTCAGGGAGCTG
ATGGGGTGCCTGGCCTTTTCCGGGAGCCTGGAGACGTCTCCGTACAGCCA
CCTCCTGTCGTCGTCGCTCTGGGCGCGGGCGAAGGAATCCGTGGCGGTCG
ACGGCAGTCGCGTGTCCGGGCTGTCAAGGGAGAGCATTCTGTCCGTCGCG
TTTCGGGAGCTGATGGGGTGCCTGGCCTTTTCCGGGAGCCTGGAGACGTC
TCCGTACAGCCACCTCCTGTCGTCGTCGCTCTGGGCGCGGGCGAAGGAAT
CCGTGGCGGTCGACGGCAGTCGCGTGTCCGGGCTGTCAAGGGAGAGCATT
CTGTCCGTCGCGTTTCGGGCCGGGGTGCTAGCGCTGCCGACGCTGATCAA
GATGGCGGCCGTGGTGCGGGGCAGCAACCAGGAGTGGGACGGGATGCGGG
AGCTGCCGCTGGAGGTGCCGCTCCCGGCGGGCTTGCGCTACCACAGCATG
TTCTCCTGCCCGGTCACCAGAGAGCCAAGGCCGGGGTGCTAGCGCTGCCG
ACGCTGATCAAGATGGCGGCCGTGGTGCGGGGCAGCAACCAGGAGTGGGA
CGGGATGCGGGAGCTGCCGCTGGAGGTGCCGCTCCCGGCGGGCTTGCGCT
ACCACAGCATGTTCTCCTGCCCGGTCACCAGAGAGCCAAGCACGCTGGAC
AACCCGCCGGTGCTCCTGAAGTGCGGCCACGCGGTCCTGCGTTCTAGCGT
GAGTCGCCTCGCGAGGAGCGGTTCTAGGTTCAAGTGCCCTACCTGTCCGG
TGGAGCAGACGGAGAACGAGACCATGGCTCTCACGCTCTGACACGCTGGA
CAACCCGCCGGTGCTCCTGAAGTGCGGCCACGCGGTCCTGCGTTCTAGCG
TGAGTCGCCTCGCGAGGAGCGGTTCTAGGTTCAAGTGCCCTACCTGTCCG
GTGGAGCAGACGGAGAACGAGACCATGGCTCTCACGCTCTGA
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