mRNA_L-elsbetiae_contig7347.16217.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7347.16217.1
Unique NamemRNA_L-elsbetiae_contig7347.16217.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7347.16217.1 vs. uniprot
Match: D7G116_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G116_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.910e-46
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  172 LDGAYKIGELVNFNGGRVQPQSLEPKHALTFRVEIGGHMVAYVSGESKPARRTRMVKTNLVARNGVFVHVVDKILYAE 405
            +DGAYKIGELVNFNGGRVQPQSLEPKHAL FRVEIGGHMVAYVSGE+KPARRTRMVKT+L+ARNGVFVHVVDKILYAE
Sbjct:    1 MDGAYKIGELVNFNGGRVQPQSLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVVDKILYAE 78
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BLAST of mRNA_L-elsbetiae_contig7347.16217.1 vs. uniprot
Match: A0A8J2X3H5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3H5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.810e-15
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 1 
Query:   25 ASSGCRWFLEAMRK-ANRLQGANSITILAPKDSAF-HSADAFEDSSWGLHILDGAYKIGELVNFNGGRVQPQSLEPKHALTFRVEIGGHMVAYVSGESKPARRTRMVKTNLVARNGVFVHVVDKILYAE 405
            A   C  F + +R+ A  L+G    T+L P D AF    DAFED  WG+H++DG +K+G++     GRV  + ++ +H +  RV+  G    ++  +  P RR  +++ ++  ++G  +HVVD ILY +
Sbjct:  353 ALENCGKFAQLVREQAPDLRGC---TVLVPTDDAFLGDDDAFEDDCWGVHVIDGPWKMGDMAV--AGRVLGRHVDTRHGIRTRVQPDGRYAVWLDTDPSPPRRALVLEMDISCQHGTVLHVVDGILYPD 476
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7347.16217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G116_ECTSI2.910e-4693.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2X3H5_9STRA6.810e-1533.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7347contigL-elsbetiae_contig7347:4572..7022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002120.1
Exons4
Model size408
Cds size408
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7347.16217.1prot_L-elsbetiae_contig7347.16217.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7347 4572..7022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.8910344-CDS-L-elsbetiae_contig7347:4571..47041622816817.8910344-CDS-L-elsbetiae_contig7347:4571..4704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 4572..4704 +
1691683836.555073-CDS-L-elsbetiae_contig7347:4571..47041691683836.555073-CDS-L-elsbetiae_contig7347:4571..4704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 4572..4704 +
1622816817.9010184-CDS-L-elsbetiae_contig7347:5946..60091622816817.9010184-CDS-L-elsbetiae_contig7347:5946..6009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 5947..6009 +
1691683836.5676763-CDS-L-elsbetiae_contig7347:5946..60091691683836.5676763-CDS-L-elsbetiae_contig7347:5946..6009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 5947..6009 +
1622816817.9138231-CDS-L-elsbetiae_contig7347:6355..64471622816817.9138231-CDS-L-elsbetiae_contig7347:6355..6447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 6356..6447 +
1691683836.5774534-CDS-L-elsbetiae_contig7347:6355..64471691683836.5774534-CDS-L-elsbetiae_contig7347:6355..6447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 6356..6447 +
1622816817.9301827-CDS-L-elsbetiae_contig7347:6902..70221622816817.9301827-CDS-L-elsbetiae_contig7347:6902..7022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 6903..7022 +
1691683836.588126-CDS-L-elsbetiae_contig7347:6902..70221691683836.588126-CDS-L-elsbetiae_contig7347:6902..7022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 6903..7022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7347.16217.1

>prot_L-elsbetiae_contig7347.16217.1 ID=prot_L-elsbetiae_contig7347.16217.1|Name=mRNA_L-elsbetiae_contig7347.16217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
PSTLTDVLASSGCRWFLEAMRKANRLQGANSITILAPKDSAFHSADAFED
SSWGLHILDGAYKIGELVNFNGGRVQPQSLEPKHALTFRVEIGGHMVAYV
SGESKPARRTRMVKTNLVARNGVFVHVVDKILYAE*
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mRNA from alignment at L-elsbetiae_contig7347:4572..7022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7347.16217.1 ID=mRNA_L-elsbetiae_contig7347.16217.1|Name=mRNA_L-elsbetiae_contig7347.16217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2451bp|location=Sequence derived from alignment at L-elsbetiae_contig7347:4572..7022+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAGCACGCTCACGGATGTCTTGGCCAGCTCGGGCTGCCGCTGGTTCCT
CGAGGCAATGCGGAAAGCAAACAGGTTGCAGGGGGCGAATAGCATCACCA
TTCTTGCGCCAAAGGATAGTGCATTCCACTCAGGTATTTAGGGAGGCCTC
ATGAGACAAGAAAATCGCAGAAAGACAAAACACGTGCGGGTTGTATCAAA
TATGCGCACGATACTACAAACGCTGCTGTTTTATCTAGATATATATGTAG
ATACTTGTACTGCTGTTGAGAATCGTTCTTCGAGACAGCAAATAAATAGT
TGCAACCTCCTTCCCAAGGTCGGATCGACGTGCAACCTCCTTCCCAAGTC
GGATATCTTCCCATGCATCACCCTAAAACCCTGATTGAACGCATCCTCGA
TTATTCTCGGCTGTGCGACAAGATGAGGTGATTCAATATACCACAGAACG
TGCCGACAACAAGGTCCCCACTCTTACCGCCATCCGGCGGCCCTTAGTTT
TATGGACCATCCGAAACAGTTTTACAATTTTTTTATCCTGCTGGTTTCAG
AGACTCCAAAGTCTCGATTTGATCGAAATTATTGCCCGAATATTTTCAAA
AAATGGGGCACCACCACCTCGGCCCCGACTTTACAGACATGTTCGAACGG
TATCCCAAAAGAGTAACATAGCCGCGGGGCAGGCGTCCAATGGGTCCTTG
TGCCTCGAGTGGTGTGTGCTGAAATAGCGTTCTTAGCACGTTTTGGGACT
GCTGAAAAAGGCGGCCCCAACTCCGACATCAGGTTGTGGAGGCATATCCC
ACGACTCTCACACCCAGCGAGAGGCTGCGAGGAGACACAGGTGTGCTTGA
ATAGTGTGTCTCTTAGAACAGCCATCGGCGGCGACCTCAGCAGTGGAGGC
ATTCCCGTTTTGAAATGGCAGTGGCGTTTGCCAATATCCAAGACAATCTA
CAGCAATAGCGAGTGGAGGTCAAGCAAGGGCCCTGCAGCACCGCCAGAGA
CACGAAGGCAAAGCGAAGGTCGCTGTTATTGTCTTCAGCTTTCAATACAT
ATACCAAGGTCGACGCCAAGGAGATGGTGCCCCCTTTAAAACTGCGATTG
CGCTCAGTGAAATAGCGAAGATAGAAGACTCTCTAGTTAGGTACAACCGC
CATGTTTTTGGAAATTTTACCGATCACCCGCAGACCCCGTCATTTTTTGC
CCAATGTAGATCACAGAACACAAACAGCATGCATGTGCCTCTTCGCCTTT
TTTTGTAGAATAACGCTATTTCTCCTCAGCCTCCTAGTCGTGGGTCACCT
TGATACTGCTGCTGTGCGTGCATTGCTCTTTTGCGGTCATGGCCATACGA
CTACGTACGCGCGTACTCGTACTAGCGGATGCTTTCGAAGATTCTTCTTG
GGGCCTTCACATTCTGGACGGTGCCTACAAAATAGGAGGTCAGCTGAGCA
ACAACACAGCTGCAGTATGTTTAAAATGTTTGGGCATTAAAGCACCGACC
CGTACCGTCGAAAGTTCGTGACTCTTGTATACCTCCTGCTGCTCCCACCT
TTTCCATATCACCAACATATCCTCCACGACCTGTTGAAAAAGGATTACGT
GAAGCCCATTAGGCGCTTGCATTGGCTGCTATACGTAAGGCTTTGGATTT
TCTGGGCGATGCTTCAGTACCAGCCGTTGCGTAATTGTACAACGTACGTG
CTGTACGAAAAACTCACCGACCTGATGAACACTTTTTGTATAAATATGCA
CGTGTCCTTGTCGATGCCCATCGCAAACACGCAGAATTGGTAAACTTCAA
CGGGGGCAGGGTGCAGCCTCAGAGCTTGGAGCCGAAGCACGCCCTCACTT
TTCGCGTCGAGATCGGTGGCCACATGGTGTGCACGCAAACTCGTAACCCG
CTTCAGATGAACATGCCATGAGGCCGTGCACAACTCATCGTGCACGTGGT
ATATTTACTTGCAGTTGTGGCGGTACAGCAGCACCTTGCTTTTGAAAGAA
CAAGGAAAAAACAATGCCAGCGTTCTCCAAGAACACTTTGCCCGCCATCG
AGTGCTCCTACAATAAGATAATTGTATCTACATATCTAGACTATCTACAT
AGTCCATGTCTTCTGGCGAACTGGTGATGAAGCTTTTGTGCTCATTGCAC
CTCCTTCCACAATATTCTTGTGTCGTAGGAATATGTTTGCGTGTGCCTTA
TTCCTTACTCGGATGTTGATCTTTTTCGACAGCCAATCGCAGCTTCATAG
CCTAGTCTAGAGCAATACAATTTCGTACTTTTTCGTGTGCCTCTCCCGCG
TTTCTTTCGGCATATTCTTGCCATTTTTCAGGTAGCCTACGTTTCCGGGG
AATCCAAACCAGCACGCCGAACACGAATGGTGAAGACAAACCTCGTGGCC
CGCAATGGAGTGTTCGTACACGTCGTGGACAAAATACTGTACGCGGAATA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7347:4572..7022+

>mRNA_L-elsbetiae_contig7347.16217.1 ID=mRNA_L-elsbetiae_contig7347.16217.1|Name=mRNA_L-elsbetiae_contig7347.16217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig7347:4572..7022+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAGCACGCTCACGGATGTCTTGGCCAGCTCGGGCTGCCGCTGGTTCCT
CGAGGCAATGCGGAAAGCAAACAGGTTGCAGGGGGCGAATAGCATCACCA
TTCTTGCGCCAAAGGATAGTGCATTCCACTCAGCCAAGCACGCTCACGGA
TGTCTTGGCCAGCTCGGGCTGCCGCTGGTTCCTCGAGGCAATGCGGAAAG
CAAACAGGTTGCAGGGGGCGAATAGCATCACCATTCTTGCGCCAAAGGAT
AGTGCATTCCACTCAGCGGATGCTTTCGAAGATTCTTCTTGGGGCCTTCA
CATTCTGGACGGTGCCTACAAAATAGGAGCGGATGCTTTCGAAGATTCTT
CTTGGGGCCTTCACATTCTGGACGGTGCCTACAAAATAGGAGAATTGGTA
AACTTCAACGGGGGCAGGGTGCAGCCTCAGAGCTTGGAGCCGAAGCACGC
CCTCACTTTTCGCGTCGAGATCGGTGGCCACATGAATTGGTAAACTTCAA
CGGGGGCAGGGTGCAGCCTCAGAGCTTGGAGCCGAAGCACGCCCTCACTT
TTCGCGTCGAGATCGGTGGCCACATGGTAGCCTACGTTTCCGGGGAATCC
AAACCAGCACGCCGAACACGAATGGTGAAGACAAACCTCGTGGCCCGCAA
TGGAGTGTTCGTACACGTCGTGGACAAAATACTGTACGCGGAATAAGTAG
CCTACGTTTCCGGGGAATCCAAACCAGCACGCCGAACACGAATGGTGAAG
ACAAACCTCGTGGCCCGCAATGGAGTGTTCGTACACGTCGTGGACAAAAT
ACTGTACGCGGAATAA
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