mRNA_L-elsbetiae_contig7240.16106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: D7FRL9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL9_ECTSI) HSP 1 Score: 301 bits (771), Expect = 6.760e-95 Identity = 155/253 (61.26%), Postives = 170/253 (67.19%), Query Frame = 3 Query: 90 RRRFDNMVMLSSVHRAVA-GLLLLCPYAASFVSSPSQKQQRLPPHTPHSSSGVLAPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQF 845 + R M HRA A LLLCP +++FV + +R P P A +GKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAA++QNGSS HFEN ADR+ EDGAPDGFVLTCSTHPTGPGVKL+LSANA+MW+AYC+R DDISTQDLLRQTSA +MRKYRVEHPDYFREEVERQF Sbjct: 80 KSRLVTRTMPPFAHRAAATAALLLCPLSSAFVPALPSPHERRPSAVGRGLVATSTPVVAQTTSPACSTRPRAKRGLHATELGAAADRGGGGEECGDEGKGGEGKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAARVQNGSSSHFENSADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQF 332
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A836CQ20_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ20_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.970e-24 Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 3 Query: 417 ERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSS------------GHFENRADRVSEDGAPD-GFVLTCSTHPTGPGVKLELSANADMWEA-YCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQF 845 E+ W+V + HGE + ++P D+IL+AAE++G+ Y+CRRGNC++CA + + SS G +D D A D GF L+C ++P GPG+++EL + W+ YC R D +T+ + A + R Y +PD F ++ERQF Sbjct: 8 EKTWEVTFELHGEETTVLMRPDDTILQAAELAGLRAPYDCRRGNCLTCAGRFKAASSYNLVTTLRQEAGGAVTLDSDTFLCDEAKDEGFFLSCCSYPVGPGLRVELGVQKEAWQIQYCDRLRDEATRAAALEAVAQVQRGYSERNPDKFVADLERQF 164
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC) HSP 1 Score: 79.3 bits (194), Expect = 4.420e-14 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 420 RPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGH-FENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFD 740 R W +E+++ G+ + V G S+LEAAE + +CR G C SCA +I G G + D + E G+VLTC T+ GPG+K+EL+ N +++ RF+ Sbjct: 18 RSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A6V1VDI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VDI3_HETAK) HSP 1 Score: 78.2 bits (191), Expect = 3.030e-13 Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 3 Query: 426 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSG-HFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFDDISTQD 758 W++E+ G +++TV D +LEAAE + + CR G C +C+ +I G G +++ + E GF ++C TH TGPGVK+EL+ ++E +++ + +D Sbjct: 50 WEIELTLDGVTKMVTVSEADCVLEAAEKVFDDPPFSCRNGVCTTCSCRIVEGKEGENYKLAVHGLGETALSQGFTMSCQTHVTGPGVKIELNQYDTVYEMQYGQYEKGTAKD 161
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A7S4F9M2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9M2_CHRCT) HSP 1 Score: 77.8 bits (190), Expect = 3.500e-13 Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 3 Query: 408 SVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADR-VSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEA-YCSRF 737 +V++R W V V + V+ V G +L A E +G+ +CRRGNC+SCAA+I NG+ R + + + GFVL CS + G G+++E+ ++WE Y RF Sbjct: 17 AVVKRAWPVTVHIGRQAHVLRVPEGQPVLLALEAAGLLPGSDCRRGNCLSCAARIINGAPFSLRVRDNTALCSEAHESGFVLLCSAYVCGKGLEIEVDMEGEVWELQYSKRF 128
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.820e-12 Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 3 Query: 426 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFDDISTQD 758 WDV++ + GE +V+TV ILEAAE ++ CR G C +CA ++ E +S + + +GFVLTC THP GPG+++EL ++E+ +++ +T + Sbjct: 55 WDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKE-AIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTE 163
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A0G4EFE2_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFE2_VITBC) HSP 1 Score: 71.6 bits (174), Expect = 5.570e-11 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 432 VEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGH-FENRADRVSEDGAPDGFVLTCSTHPTGPGVKLEL 695 V+V +G+ +TV PGDSILEAAE +G+ L ++CR G C+ C AK+ +GS H D V+E G + L C P V +E+ Sbjct: 68 VKVSINGDTYDVTVNPGDSILEAAEEAGLELPHDCRLGTCLQCTAKVVSGSVDHGMGTLDDEVTEAG----YTLACQATPLSDDVHIEI 152
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A0M0K3H8_9EUKA (Ferredoxin (2fe-2s) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3H8_9EUKA) HSP 1 Score: 76.3 bits (186), Expect = 5.960e-11 Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 3 Query: 402 PRSVLERPWDVE-VDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADRVSEDGAP-DGFVLTCSTHPTGPGVKLELSANADMWEA-YCSRF 737 P S R WDV V +R ++V S+L AAE++G+ +CRRG C+SCAA++ +GS +D D A +G VL CS +P GP ++L+L A D E Y RF Sbjct: 417 PSSNPSRVWDVTLVSADEQRHTLSVAENQSVLRAAELAGLLPCSDCRRGRCLSCAARVVSGSKFSLAVDSDTALCDEAHVEGIVLLCSAYPRGPNLELKLDAEGDALEIQYEKRF 531
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A7S2BT51_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT51_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 6.570e-10 Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 3 Query: 471 VQPGDSILEAAEMSGMNLSYECRRGNCISCAAKI--QNGSSGHFENRADRVS----EDGAPDGFVLTCSTHPTGPGVKLELSANADMWEA-YCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQFNE 851 ++ +IL+ E G+ ECRRGNC+SC+ K+ ++ +S H + + +D +GF+LTC ++ TGPGV L L + ++ Y RF + L + SA MR++ +P F VE+QF E Sbjct: 20 IRKDQTILDLCEEMGLRPPSECRRGNCLSCSGKLLPESTTSVHTVDETGDCNVFLCDDARREGFLLTCVSYVTGPGVVLHLEQAHEAYKVQYVKRFKKKDVEVLGVEASAQAMREWGERNPAKFIGIVEKQFAE 153
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A7R9YXN5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXN5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 9.530e-10 Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 3 Query: 528 YECRRGNCISCAAKIQNGSSGHFENRADR-----VSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWE-AYCSRFDDISTQDLLRQTSAGLMR 791 +ECRRGNC++CA + GS+ R + +SE+ G+VLTCS++ G GVKL+L +N+D WE + SR T+ A LMR Sbjct: 9 FECRRGNCLTCAGRHAEGSATSNLRRGEDGLSPYLSEEVRGLGYVLTCSSYVEGDGVKLDLGSNSDAWEDVHTSRLQSPETERTGLAAQAKLMR 102 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7240.16106.1 >prot_L-elsbetiae_contig7240.16106.1 ID=prot_L-elsbetiae_contig7240.16106.1|Name=mRNA_L-elsbetiae_contig7240.16106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp MVMLSSVHRAVAGLLLLCPYAASFVSSPSQKQQRLPPHTPHSSSGVLAPAback to top mRNA from alignment at L-elsbetiae_contig7240:2993..8906- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7240.16106.1 ID=mRNA_L-elsbetiae_contig7240.16106.1|Name=mRNA_L-elsbetiae_contig7240.16106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5914bp|location=Sequence derived from alignment at L-elsbetiae_contig7240:2993..8906- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7240:2993..8906- >mRNA_L-elsbetiae_contig7240.16106.1 ID=mRNA_L-elsbetiae_contig7240.16106.1|Name=mRNA_L-elsbetiae_contig7240.16106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig7240:2993..8906- (Laminarionema elsbetiae ELsaHSoW15)back to top |