mRNA_L-elsbetiae_contig7240.16106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7240.16106.1
Unique NamemRNA_L-elsbetiae_contig7240.16106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: D7FRL9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL9_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 6.760e-95
Identity = 155/253 (61.26%), Postives = 170/253 (67.19%), Query Frame = 3 
Query:   90 RRRFDNMVMLSSVHRAVA-GLLLLCPYAASFVSSPSQKQQRLPPHTPHSSSGVLAPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQF 845
            + R     M    HRA A   LLLCP +++FV +     +R P            P  A                                          +GKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAA++QNGSS HFEN ADR+ EDGAPDGFVLTCSTHPTGPGVKL+LSANA+MW+AYC+R DDISTQDLLRQTSA +MRKYRVEHPDYFREEVERQF
Sbjct:   80 KSRLVTRTMPPFAHRAAATAALLLCPLSSAFVPALPSPHERRPSAVGRGLVATSTPVVAQTTSPACSTRPRAKRGLHATELGAAADRGGGGEECGDEGKGGEGKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAARVQNGSSSHFENSADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQF 332
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A836CQ20_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ20_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.970e-24
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 3 
Query:  417 ERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSS------------GHFENRADRVSEDGAPD-GFVLTCSTHPTGPGVKLELSANADMWEA-YCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQF 845
            E+ W+V  + HGE   + ++P D+IL+AAE++G+   Y+CRRGNC++CA + +  SS            G     +D    D A D GF L+C ++P GPG+++EL    + W+  YC R  D +T+    +  A + R Y   +PD F  ++ERQF
Sbjct:    8 EKTWEVTFELHGEETTVLMRPDDTILQAAELAGLRAPYDCRRGNCLTCAGRFKAASSYNLVTTLRQEAGGAVTLDSDTFLCDEAKDEGFFLSCCSYPVGPGLRVELGVQKEAWQIQYCDRLRDEATRAAALEAVAQVQRGYSERNPDKFVADLERQF 164
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 4.420e-14
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  420 RPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGH-FENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFD 740
            R W +E+++ G+   + V  G S+LEAAE    +   +CR G C SCA +I  G  G  +    D + E     G+VLTC T+  GPG+K+EL+ N +++     RF+
Sbjct:   18 RSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A6V1VDI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VDI3_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 3.030e-13
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 3 
Query:  426 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSG-HFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFDDISTQD 758
            W++E+   G  +++TV   D +LEAAE    +  + CR G C +C+ +I  G  G +++     + E     GF ++C TH TGPGVK+EL+    ++E    +++  + +D
Sbjct:   50 WEIELTLDGVTKMVTVSEADCVLEAAEKVFDDPPFSCRNGVCTTCSCRIVEGKEGENYKLAVHGLGETALSQGFTMSCQTHVTGPGVKIELNQYDTVYEMQYGQYEKGTAKD 161
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A7S4F9M2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9M2_CHRCT)

HSP 1 Score: 77.8 bits (190), Expect = 3.500e-13
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 3 
Query:  408 SVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADR-VSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEA-YCSRF 737
            +V++R W V V    +  V+ V  G  +L A E +G+    +CRRGNC+SCAA+I NG+      R +  +  +    GFVL CS +  G G+++E+    ++WE  Y  RF
Sbjct:   17 AVVKRAWPVTVHIGRQAHVLRVPEGQPVLLALEAAGLLPGSDCRRGNCLSCAARIINGAPFSLRVRDNTALCSEAHESGFVLLCSAYVCGKGLEIEVDMEGEVWELQYSKRF 128
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.820e-12
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 3 
Query:  426 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWEAYCSRFDDISTQD 758
            WDV++ + GE +V+TV     ILEAAE    ++   CR G C +CA ++        E     +S + + +GFVLTC THP GPG+++EL     ++E+   +++  +T +
Sbjct:   55 WDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKE-AIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTE 163
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A0G4EFE2_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFE2_VITBC)

HSP 1 Score: 71.6 bits (174), Expect = 5.570e-11
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 3 
Query:  432 VEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGH-FENRADRVSEDGAPDGFVLTCSTHPTGPGVKLEL 695
            V+V  +G+   +TV PGDSILEAAE +G+ L ++CR G C+ C AK+ +GS  H      D V+E G    + L C   P    V +E+
Sbjct:   68 VKVSINGDTYDVTVNPGDSILEAAEEAGLELPHDCRLGTCLQCTAKVVSGSVDHGMGTLDDEVTEAG----YTLACQATPLSDDVHIEI 152
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A0M0K3H8_9EUKA (Ferredoxin (2fe-2s) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3H8_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 5.960e-11
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 3 
Query:  402 PRSVLERPWDVE-VDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKIQNGSSGHFENRADRVSEDGAP-DGFVLTCSTHPTGPGVKLELSANADMWEA-YCSRF 737
            P S   R WDV  V    +R  ++V    S+L AAE++G+    +CRRG C+SCAA++ +GS       +D    D A  +G VL CS +P GP ++L+L A  D  E  Y  RF
Sbjct:  417 PSSNPSRVWDVTLVSADEQRHTLSVAENQSVLRAAELAGLLPCSDCRRGRCLSCAARVVSGSKFSLAVDSDTALCDEAHVEGIVLLCSAYPRGPNLELKLDAEGDALEIQYEKRF 531
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A7S2BT51_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT51_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.570e-10
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 3 
Query:  471 VQPGDSILEAAEMSGMNLSYECRRGNCISCAAKI--QNGSSGHFENRADRVS----EDGAPDGFVLTCSTHPTGPGVKLELSANADMWEA-YCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQFNE 851
            ++   +IL+  E  G+    ECRRGNC+SC+ K+  ++ +S H  +     +    +D   +GF+LTC ++ TGPGV L L    + ++  Y  RF     + L  + SA  MR++   +P  F   VE+QF E
Sbjct:   20 IRKDQTILDLCEEMGLRPPSECRRGNCLSCSGKLLPESTTSVHTVDETGDCNVFLCDDARREGFLLTCVSYVTGPGVVLHLEQAHEAYKVQYVKRFKKKDVEVLGVEASAQAMREWGERNPAKFIGIVEKQFAE 153
[Close]
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Match: A0A7R9YXN5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXN5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.530e-10
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 3 
Query:  528 YECRRGNCISCAAKIQNGSSGHFENRADR-----VSEDGAPDGFVLTCSTHPTGPGVKLELSANADMWE-AYCSRFDDISTQDLLRQTSAGLMR 791
            +ECRRGNC++CA +   GS+     R +      +SE+    G+VLTCS++  G GVKL+L +N+D WE  + SR     T+       A LMR
Sbjct:    9 FECRRGNCLTCAGRHAEGSATSNLRRGEDGLSPYLSEEVRGLGYVLTCSSYVEGDGVKLDLGSNSDAWEDVHTSRLQSPETERTGLAAQAKLMR 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7240.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL9_ECTSI6.760e-9561.26Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836CQ20_9STRA1.970e-2435.672Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0G4EXA3_VITBC4.420e-1436.112Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6V1VDI3_HETAK3.030e-1331.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4F9M2_CHRCT3.500e-1335.71Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A4D9D796_9STRA3.820e-1234.232Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0G4EFE2_VITBC5.570e-1140.452Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0M0K3H8_9EUKA5.960e-1139.13Ferredoxin (2fe-2s) n=1 Tax=Chrysochromulina tobin... [more]
A0A7S2BT51_9STRA6.570e-1032.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9YXN5_9STRA9.530e-1039.36Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7240contigL-elsbetiae_contig7240:2993..8906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score70.9
Seed ortholog evalue9.9e-10
Seed eggNOG ortholog1070774.J07HN4v3_00937
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorychloroplast
EggNOG free text desc.COG0633 Ferredoxin
EggNOG OGs23UXM@183963,2XVV8@28890,COG0633@1,arCOG02843@2157
COG Functional cat.C
Best tax levelHalobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-12_002550.1
Exons7
Model size1625
Cds size756
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.8085473-UTR-L-elsbetiae_contig7240:2992..37541622816806.8085473-UTR-L-elsbetiae_contig7240:2992..3754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7240 2993..3754 -
1691683827.9033802-UTR-L-elsbetiae_contig7240:2992..37541691683827.9033802-UTR-L-elsbetiae_contig7240:2992..3754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7240 2993..3754 -
1622816806.886862-UTR-L-elsbetiae_contig7240:8081..81171622816806.886862-UTR-L-elsbetiae_contig7240:8081..8117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7240 8082..8117 -
1691683827.985973-UTR-L-elsbetiae_contig7240:8081..81171691683827.985973-UTR-L-elsbetiae_contig7240:8081..8117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7240 8082..8117 -
1622816806.8972697-UTR-L-elsbetiae_contig7240:8835..89061622816806.8972697-UTR-L-elsbetiae_contig7240:8835..8906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7240 8836..8906 -
1691683828.0014243-UTR-L-elsbetiae_contig7240:8835..89061691683828.0014243-UTR-L-elsbetiae_contig7240:8835..8906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7240 8836..8906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.8211293-CDS-L-elsbetiae_contig7240:3754..38471622816806.8211293-CDS-L-elsbetiae_contig7240:3754..3847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 3755..3847 -
1691683827.9174035-CDS-L-elsbetiae_contig7240:3754..38471691683827.9174035-CDS-L-elsbetiae_contig7240:3754..3847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 3755..3847 -
1622816806.8330855-CDS-L-elsbetiae_contig7240:4341..43921622816806.8330855-CDS-L-elsbetiae_contig7240:4341..4392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 4342..4392 -
1691683827.9265451-CDS-L-elsbetiae_contig7240:4341..43921691683827.9265451-CDS-L-elsbetiae_contig7240:4341..4392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 4342..4392 -
1622816806.8450634-CDS-L-elsbetiae_contig7240:5014..50951622816806.8450634-CDS-L-elsbetiae_contig7240:5014..5095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 5015..5095 -
1691683827.934942-CDS-L-elsbetiae_contig7240:5014..50951691683827.934942-CDS-L-elsbetiae_contig7240:5014..5095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 5015..5095 -
1622816806.8559206-CDS-L-elsbetiae_contig7240:6186..62451622816806.8559206-CDS-L-elsbetiae_contig7240:6186..6245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 6187..6245 -
1691683827.9433985-CDS-L-elsbetiae_contig7240:6186..62451691683827.9433985-CDS-L-elsbetiae_contig7240:6186..6245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 6187..6245 -
1622816806.8663623-CDS-L-elsbetiae_contig7240:6969..70481622816806.8663623-CDS-L-elsbetiae_contig7240:6969..7048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 6970..7048 -
1691683827.9527118-CDS-L-elsbetiae_contig7240:6969..70481691683827.9527118-CDS-L-elsbetiae_contig7240:6969..7048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 6970..7048 -
1622816806.8768017-CDS-L-elsbetiae_contig7240:7688..80811622816806.8768017-CDS-L-elsbetiae_contig7240:7688..8081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 7689..8081 -
1691683827.9696722-CDS-L-elsbetiae_contig7240:7688..80811691683827.9696722-CDS-L-elsbetiae_contig7240:7688..8081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7240 7689..8081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7240.16106.1prot_L-elsbetiae_contig7240.16106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7240 3755..8081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7240.16106.1

>prot_L-elsbetiae_contig7240.16106.1 ID=prot_L-elsbetiae_contig7240.16106.1|Name=mRNA_L-elsbetiae_contig7240.16106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MVMLSSVHRAVAGLLLLCPYAASFVSSPSQKQQRLPPHTPHSSSGVLAPA
TAAATATATAKTPASSSARATELAATNPGGGGGDGDGAGDGTGAKGKPPR
SVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCIS
CAAKIQNGSSGHFENRADRVSEDGAPDGFVLTCSTHPTGPGVKLELSANA
DMWEAYCSRFDDISTQDLLRQTSAGLMRKYRVEHPDYFREEVERQFNEPK
A*
back to top

mRNA from alignment at L-elsbetiae_contig7240:2993..8906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7240.16106.1 ID=mRNA_L-elsbetiae_contig7240.16106.1|Name=mRNA_L-elsbetiae_contig7240.16106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5914bp|location=Sequence derived from alignment at L-elsbetiae_contig7240:2993..8906- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCCTTTCCCTGCTTCCCAGCTGCAGCAGAGGCGACAGTAAATTTTC
GCTGGTTGGTTGGAGAGCAAGGTGCGTATTTCACGTTGTGGTCGCCCAGG
GATATCATAGGTGGCGTGGCACCCGAGGGTGGTCATGTACCACGCCATGC
TGTGCTTATGGGACACGACTCAAGCACGCTCGTGTTGGATCAAAGGGCGT
GCCTAATCATTTGTCTCGCACATAGCTCTTGCTCCACAGAAGGTTTGTTC
TTCTGTGTTGAGGGGTGTCATGTGTTCACTCAAGTTATCTCTCTCTGTGT
CTCGTCTAGACTGCTGTTGTATCCACTGCTATTTAGGACTTCATAGTTGT
TGCAATATGTCTGTATAAAGGCACACGCGCGTTTCGAGGCACGCGCACAT
CATTATTACCTACCATGCGAAGGTCTATGTGGTACACAGGAAGATAGCCT
AGTAAACTAATTACATATTGACACAGAAATAGCAATGCATAACTACAGCA
GGTTAGTACGATGTTTTTTTTTTATGTCTGCGGTCGCCACCAATGCTCCC
CGTTAGTAGAGCCTGCCGCCCCCGTGCACACGCACACACACAGTAGTAGT
AGTACACAGGACAACCTCGGGCTGATGTGCCAGGTTATTTGTCACTGCTG
CTGTAGCACGGCAGAAGCTCGGCACGCCTTGTTTCTCCAGGACAACCAAC
CATCTGATCATGGTTTATCTCGATGTCTTCCCTCCTTGCCCGTCGTCCGC
TCACCCCCCTGCGATCGATCTCAACGCCCACCCACCCAGACACGTTTTTG
TCCGTCTCGCAGGCGTTTCGATAATATGGTGATGTTGTCGTCCGTTCACC
GAGCGGTCGCGGGCCTCCTCCTACTGTGCCCGTACGCGGCCTCCTTCGTT
TCGTCCCCGAGCCAGAAGCAACAGCGATTACCACCGCACACTCCCCACAG
CAGCAGTGGCGTCTTGGCCCCGGCGACAGCAGCAGCGACGGCGACAGCGA
CAGCGAAAACACCGGCGTCGTCGTCAGCACGTGCAACGGAGCTAGCCGCA
ACAAACCCAGGGGGTGGAGGGGGCGACGGCGACGGCGCGGGGGATGGGAC
TGGCGCGAAAGGAAAACCGCCTCGATCTGTTCTCGAGCGACCTTGGGACG
TGGAGGTGGATTTTCATGGCGAGCGGCGTGTGATCACGGTGCAGCCCGGG
GACAGCATACTGGAGGCGGTGAGCGCGAAGTTAACTTTACTCTTGTACTC
CTATTGTACAAGGTTGTTGGCGGCTTCCGCCGCCAAGCTAAGTGTGAGCG
AGTCTCAAGATGCATGAGAAGTGGTGTGATGACTGCATACATATGTCCCG
GAAGCATATCGTAGGTGACACAAGATACCACACCCCCTGGACCGAATTAT
AGAGCTCCATTACTCCGTAACGAAGAAGGTGCCAGCACCAAACGACACAT
TTTCGGACAGCGCTCGGCAATATATTTCCAACGCCACCCCTTTCGGCACT
GCCACTCTTGTTGCAGGGGAGGAATTGAGCTTTGAAAATCTGTCCAGGGG
GTGTGGTATCATGTGTCAACTACGGTATTGTCAAAAAACGTTGCAGATGA
AAGAAACCAGTGAGTGCCCCCTTGCGACTACTTTCTGCGGGGCCGCCGTG
GTCTTTTTCCGGCCGTGTTCCGCCGCGCCGAGCCACGCTACTAGCTTAGC
CGTAGACGAAACACCCATGAAGGGGCCCATAAATTCCGCTCCTTGGGCTG
TGGTGCCAGTATCGGTTGTTCGTGATGATGTGGTGTTCTGCTTTGCGGGC
GTCGCAAACCCTAAAACCTTGTTTTGCTGCTGTTCTGTGATAATTCACCG
CCGTGCAGGCGGAGATGTCTGGGATGAATTTGTCCTACGAGTGCAGACGA
GGTAACTGCATCAGCTGCGCAGCCAAGATCCAAAACGGTGAGGGACAGGA
TTTATGTCATAGGTGGCATATATACATACTTCTATGTGGCTAAATATATA
AATAACTCCGTTGTCGTCGTCGACTCAACTATTAAGTTGGCAGCTCTCCT
TCTCGGTCCTTTGTTTTTTGTTTTCTGCGTTTCGCCGCTTTTTTCTATTT
CAACGATTTTTGTTTGTCTTGGATGTCTTCCCGAGGCTGCTTACCTAAAA
ACAGCTGTTTTATTGCTCGGTAGATGGGAGCATATTGCTCGTTACATACA
TGCATAGGAGCATGATGCCGTGACCTACTCTGCCTCGCGACAGCGACGTA
GAGATAGATGTGTTAAATACCAGCTGCTGTCATGATGGGCGGCAGGCGCT
CCGCAGATTGCTCTTCCTTCCCCGTGGGGAGCGCTGGCTGTGTTCGTTTT
GCGGATACATAGAACCACCCCACACAGCCAACTAGAAACAAAATCCCCGA
GATCTTGATCGCTGAGATCTCGACGGTTTTGCGCCTGTTGCAAACCCAGC
GAAGCCGCAACACGACCCACCCGTGGAGTAAAGAAGTACATAAGACTTTT
TTATTATTGTTTAGTTGTGATACAATGAACCCCCCCCCCCCCCCCCCCCC
GTGCTTCTTACCCAGTCAGCACGTTGCCCCCCCCCCCTCCGGCTGTCGTT
ACTTGCACCGCCCGTTTTCGGTTTCTTTTACTCGGGTATGGGGGTTTGAC
TGGCATGGCAGGGTCATCGGGTCACTTCGAGAACAGGGCGGACAGAGTAT
CAGAAGACGGGGCTCCTGATGTAAGTCGGCCTTCACAGATGTTCCTATTG
ATGAATCTACTACATAGAAGTACATATTTACACGCATGCCCATAAACAAT
ACATAAAAAAAAAAAAAAAAAAACATAGCGCACGACCTGTGTGCCGCGTT
TTCGCTCGATCTTCGTCGGATAAGTGGCTTCCTTGCGGAAGAGAGCAAGA
CGGCTTGTGCCGGCCAGCAATGATCTTGGCATTACTCTATTTAAAAATAA
ACAATGAATCAAAGATGGAACCTACCCCACACTAGAACAAGGACTCGATA
TGTGGTTCAAACGGTATTCCATACAGAGACGCAATATTTGGCGAAGCGAG
CAGAAGAACAACCTAAAATATCAGAAGAGTTCAACATCTCCCCTGCAAAT
ATTTAAGATTTGCGAGGTCGGCCAACAATTATTCAGGCGGGTAGAGCCCG
TCGTGATTATTTACATACCTCCGATTCGCTGCTATGTAGGAAGTAGTAGT
TATCGGTCGAGAACCAGCACTCCTTTTTGCCGTGCCCTGTTTCTTGTTTT
GTTTTGTTTGTGCTTGGGATTGATTACCATGTGTTTACGTGTCGTTGCAT
GTAAGTAGCAGCAGGGAGTGCCACCGGCCACACTCGACGCTTTCGAGTAC
ATACTGTACACGCGAAGCGCACGACGCGGCTGTTGTTTCTTTGTTTTCGT
CGTCGCCCGCTCCAACCGTAGACCAGGGTTCGGGTGGACTAGACAATCGA
CTGGGCCTCGGGCCCGTAGTAGTGCAACTTGCCGCCGCGTTTTCCACGTG
GTTCCTTTTGAAAGAACGTCGAATGAAAAAAAAAGTCGCAGCGTATTCAA
GCAAGCTTAGTATGGTAAGCTGTCGGTTGGTGTTTATACCTTGGTGACAA
TGAAGCAACTGCTGTGGTGTTGAGTGGAGCCCGGTACCACGACACATACA
CATACATACATACGACGTAGCGCTTTCCCCGTGCCGTCTAGTGTCGGCGG
CATGTGTGTTGTCGCGCTTGACTCTCGACCTCATGCTCCTCCTGCCTTGG
ATCATGCCGTGCCGCCGCCCGCGTTACTCCCCCTGCCCTGTCTGCCTGGC
CGTCGCTGCAGGGCTTCGTTCTCACCTGCAGCACCCACCCCACTGGCCCG
GGCGTGAAGCTCGAGTTGTCGGCGAACGCCGACATGTGGGAGGTGAGCGA
AGAATACAAAACGGGTGAAACACCACGCGTTATTTTCGTGCGGGGGGCGG
CGGGCGCAGACAAAGACACTGCGCCGCGCTTGTCGCACCGGCTGTTTTTT
TTGTGTGTTTTATTAGTTTTTGCTTATCAATCAGCGTTTTTTTGTGTTTT
TTCTTCTCCCCCGGGTTTCTTGTGTAGCCATCACAGCGTTGTGCTTTGCC
GCGTGCTGAAGGCCGGGTCTCCCTCCCGGCGAGTGTCACAGCTGCAGGCA
GCAGGTGGCAGGTATAGCCCGCGTGGTGGAAGTTGTAGCTGCAGTTGGTG
CAGCAGGCAGGGAACACACGCCGCTGTCACCTCAATATCCGGTGTCAGAC
GTCGCGGGCTCAACTCTCTCCGCCTCTGCTGCCCTTTCCGTATCTGTCCT
ACGTAGGCGGGGTCAGCTCGCATCGATCGCATCCTCGGCTTTGGTTAGCC
TCGCGTTTGAATGATCTTTGTTTTTAGAGTTTCGGCGTACAACACACTTG
TAAGGGACGGGATGCGATGGCGATGAACACACCGGCTGGTACCGTTTTGT
CCATGACCCAAAGATTTTTTTCGGCTGATGTCTCTGTCGTCTTTGCCTTT
CTGCCGTCCGGAAGGCGTACTGCTCACGGTTCGACGACATTTCGACACAA
GACCTCCTGCGGCAGGTGAGTGTGGGTGTCGCCTTCTTCACAGCAGCGAC
CGAGCGAGTTTTGCGTCCCCGGCATGTAGAGGCAGTTCTCGGGATCGAGC
GTGTGGTCGTTCTGTTCGTAGTCGCGCGAGTGATTATTTCAAGGAAAACA
ACACAGAGGTCTGTACATAGTTAATCTCGCAGTCTTACCTCAGTTCTGCA
TTTCCAGCCAGGGGTGACAACCAGGCGAGCCCACGAGGCGGTTCTCAACG
CCGGGCTCCATGCAGAAAGTTCAAGTGCGGGGCGAGAGTTTCCTATTCTG
GCAACGCGGGCCAGATAGGCGACGTGCGTAGTAGTGCTGACTGAGTCTAG
TGTATATACTGTTGAGACATTTCTGGAGTGCCGGACTACTAGCCGCGAAG
CACCACCAACACGCACGGAGTGCACACACGTGCCCGCAACGCGCACGTCA
TCTCGCCCGTCCCGTCTCCCCTTTTTCGGACCCCCGACCGCTGCGCCATT
TTCCACCAGACTTCAGCGGGGTTGATGCGCAAGTACCGGGTGGAGCACCC
CGACTACTTTCGCGAGGAGGTAGAGCGACAGTTCAACGAACCCAAAGCCT
GACGCATTCAAACGAGCGGCCTCGAAAAAAACAACACAGATAGTAGTACT
GCTCCTTCTGAGTCTAAGGCGGGCATAAATAGCCGGGACGGCCGCGCTCC
TATACTGCTGACAGCCCCGCCGCCGCTCCGGCTAGTTATTGCTTCGGGCT
GTGCGACGGTGGCTTTGGGCTTTTGGAGGAAAACGTTTTTTTGGGGGCTA
AATTGTACCTTTGACGCTTTGTATAGAGGGAGGTGGCGGCAATCGAAGCG
GAAGTGAGTGAAGACGGTTCAAACTTGCTTGTCTGTGCGATTCTCGGCTG
ACTTTGCTCGCCAAACCTTTTGTCTCCTGTCTGCTCGAGTTTTGTTAGGG
GTACCGTAATAGCGTGCCACATGATGGCGAGGCAAACAAGTGGTGAAACA
CGGGGTGTAGTTCATGAGAAGTTTCAAAACAGCGATGAGAGCTGGGTTTC
GATTTCGGAGGCTTTGTTGTACCGGGCGTGTTGAATAAGATATATCAATA
CAAGAGGCTTCACGCCGGGGGGGGCCTATGCCCCCCCCCCGACGCTCCCA
CGAGATGATGGCACATGGCACACACACACCGGAAAGAAAACGGGCGAAGT
CGCGATAAGAACCCGCCGGAGAGAAATTATATGGGTATGCCAAGGGGAAA
ATATGTGCAAAGCGCACTCTTAGCGGTACATACATTTTGATAGACTTGGG
ACATGAATCTTGAACATTCGGCGGATTCCGCGCTAAAGCTCAATGGGCTC
TCCGGGCTCGGTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7240:2993..8906-

>mRNA_L-elsbetiae_contig7240.16106.1 ID=mRNA_L-elsbetiae_contig7240.16106.1|Name=mRNA_L-elsbetiae_contig7240.16106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig7240:2993..8906- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGATGTTGTCGTCCGTTCACCGAGCGGTCGCGGGCCTCCTCCTACT
GTGCCCGTACGCGGCCTCCTTCGTTTCGTCCCCGAGCCAGAAGCAACAGC
GATTACCACCGCACACTCCCCACAGCAGCAGTGGCGTCTTGGCCCCGGCG
ACAGCAGCAGCGACGGCGACAGCGACAGCGAAAACACCGGCGTCGTCGTC
AGCACGTGCAACGGAGCTAGCCGCAACAAACCCAGGGGGTGGAGGGGGCG
ACGGCGACGGCGCGGGGGATGGGACTGGCGCGAAAGGAAAACCGCCTCGA
TCTGTTCTCGAGCGACCTTGGGACGTGGAGGTGGATTTTCATGGCGAGCG
GCGTGTGATCACGGTGCAGCCCGGGGACAGCATACTGGAGGCGATGGTGA
TGTTGTCGTCCGTTCACCGAGCGGTCGCGGGCCTCCTCCTACTGTGCCCG
TACGCGGCCTCCTTCGTTTCGTCCCCGAGCCAGAAGCAACAGCGATTACC
ACCGCACACTCCCCACAGCAGCAGTGGCGTCTTGGCCCCGGCGACAGCAG
CAGCGACGGCGACAGCGACAGCGAAAACACCGGCGTCGTCGTCAGCACGT
GCAACGGAGCTAGCCGCAACAAACCCAGGGGGTGGAGGGGGCGACGGCGA
CGGCGCGGGGGATGGGACTGGCGCGAAAGGAAAACCGCCTCGATCTGTTC
TCGAGCGACCTTGGGACGTGGAGGTGGATTTTCATGGCGAGCGGCGTGTG
ATCACGGTGCAGCCCGGGGACAGCATACTGGAGGCGGCGGAGATGTCTGG
GATGAATTTGTCCTACGAGTGCAGACGAGGTAACTGCATCAGCTGCGCAG
CCAAGATCCAAAACGGCGGAGATGTCTGGGATGAATTTGTCCTACGAGTG
CAGACGAGGTAACTGCATCAGCTGCGCAGCCAAGATCCAAAACGGGTCAT
CGGGTCACTTCGAGAACAGGGCGGACAGAGTATCAGAAGACGGGGCTCCT
GATGGTCATCGGGTCACTTCGAGAACAGGGCGGACAGAGTATCAGAAGAC
GGGGCTCCTGATGGCTTCGTTCTCACCTGCAGCACCCACCCCACTGGCCC
GGGCGTGAAGCTCGAGTTGTCGGCGAACGCCGACATGTGGGAGGGCTTCG
TTCTCACCTGCAGCACCCACCCCACTGGCCCGGGCGTGAAGCTCGAGTTG
TCGGCGAACGCCGACATGTGGGAGGCGTACTGCTCACGGTTCGACGACAT
TTCGACACAAGACCTCCTGCGGCAGGCGTACTGCTCACGGTTCGACGACA
TTTCGACACAAGACCTCCTGCGGCAGACTTCAGCGGGGTTGATGCGCAAG
TACCGGGTGGAGCACCCCGACTACTTTCGCGAGGAGGTAGAGCGACAGTT
CAACGAACCCAAAGCCTGAACTTCAGCGGGGTTGATGCGCAAGTACCGGG
TGGAGCACCCCGACTACTTTCGCGAGGAGGTAGAGCGACAGTTCAACGAA
CCCAAAGCCTGA
back to top