mRNA_L-elsbetiae_contig720.16043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig720.16043.1
Unique NamemRNA_L-elsbetiae_contig720.16043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig720.16043.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.160e-48
Identity = 84/112 (75.00%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:   13 ATELPRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVDRWCRTKAAQRDANKADKTRRKKR-------------PFESSGEDYEGDYG 309
            A   PR RSTEGAV G+HRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSG RNQPCVDRWCRTKAAQR+++K DK  R+KR             P ESSGEDYEGDYG
Sbjct:  901 ANGTPRVRSTEGAVEGFHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLESSGEDYEGDYG 1012
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BLAST of mRNA_L-elsbetiae_contig720.16043.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.210e-46
Identity = 83/121 (68.60%), Postives = 90/121 (74.38%), Query Frame = 1 
Query:   13 ATELPRARSTEGAVLGYHR---------RLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVDRWCRTKAAQRDANKADKTRRKKR-------------PFESSGEDYEGDYG 309
            A E PR RSTEGAV G+HR         RLGANERCNQCTGCLLPNCGKCWGCQHR+EYGGSG RNQPCVDRWCRTKAAQR+++K DK  R+KR             P E+SGEDYEGDYG
Sbjct:  539 ANEPPRVRSTEGAVEGFHRNPRQTAPRRRLGANERCNQCTGCLLPNCGKCWGCQHRIEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLEASGEDYEGDYG 659
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig720.16043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.160e-4875.00CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI4.210e-4668.60CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig720contigL-elsbetiae_contig720:13611..16822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue9e-40
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size334
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig720.16043.1prot_L-elsbetiae_contig720.16043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig720 13611..16821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.4430351-CDS-L-elsbetiae_contig720:13610..136781622816801.4430351-CDS-L-elsbetiae_contig720:13610..13678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 13611..13678 +
1691683824.0266657-CDS-L-elsbetiae_contig720:13610..136781691683824.0266657-CDS-L-elsbetiae_contig720:13610..13678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 13611..13678 +
1622816801.4537125-CDS-L-elsbetiae_contig720:14444..145131622816801.4537125-CDS-L-elsbetiae_contig720:14444..14513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 14445..14513 +
1691683824.0361795-CDS-L-elsbetiae_contig720:14444..145131691683824.0361795-CDS-L-elsbetiae_contig720:14444..14513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 14445..14513 +
1622816801.4664826-CDS-L-elsbetiae_contig720:15770..159141622816801.4664826-CDS-L-elsbetiae_contig720:15770..15914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 15771..15914 +
1691683824.0440867-CDS-L-elsbetiae_contig720:15770..159141691683824.0440867-CDS-L-elsbetiae_contig720:15770..15914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 15771..15914 +
1622816801.478086-CDS-L-elsbetiae_contig720:16769..168211622816801.478086-CDS-L-elsbetiae_contig720:16769..16821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 16770..16821 +
1691683824.0542994-CDS-L-elsbetiae_contig720:16769..168211691683824.0542994-CDS-L-elsbetiae_contig720:16769..16821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 16770..16821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig720.16043.1

>prot_L-elsbetiae_contig720.16043.1 ID=prot_L-elsbetiae_contig720.16043.1|Name=mRNA_L-elsbetiae_contig720.16043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
GGASATELPRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQH
RVEYGGSGHRNQPCVDRWCRTKAAQRDANKADKTRRKKRPFESSGEDYEG
DYGFEDGGGSK
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mRNA from alignment at L-elsbetiae_contig720:13611..16822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig720.16043.1 ID=mRNA_L-elsbetiae_contig720.16043.1|Name=mRNA_L-elsbetiae_contig720.16043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3212bp|location=Sequence derived from alignment at L-elsbetiae_contig720:13611..16822+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCGCCAGCGCTACAGAGCTCCCACGGGCTCGGTCCACCGAAGGGGC
CGTGCTGGGCTACCACCGGTAAGTGCTGCTGCTGCTGCTGGTGCAGATGC
CGATGCTGATGCTGATATAGATTCTTCTGCTGGCTGCTGGTGCTGCTGGC
GCTGCTGGCTGCTGTTGCTGCATCTGTACTTCATCTGCTTCTGATCGAAT
GGAGTTCTCAGCGAGAGAGAAAGAAAAGGAGGATGGTTAAAACAGCGTGT
TGTACAGCTCTCTGTGTGACAGAACAAAACGGGCGGGATTTGTGTTTGTC
GTGTTCATGCCCTCCGGCAGGCAGGGTAGCCCTGAACGTCTTCTCTATCC
TTGTGTTATGTAGGCTCGCCTAAGAATGGCCGTAGAGACAGACACGCTGG
TTTTACATGGTTGGCGCTGTCGCAGTAGTCGTCGCACACTCGTCAACCAC
CGAGGTGTTTGCATTGTCGTGTGTATGTAGCCTGCCCACCCTCAGCTCTT
CGAGGACACCAGATACCGTACGGCACCCCGGGGCAGAAATCTGGTAACTG
GTGTCGTACCCGTCAACAACGTTCCACAAACCCAGACCCAGGCCCAGGCC
CTTGCCTTTTCAATCACTCGGCCGTGATGCGTTTCGACGATATGTATGTA
CACATGCACTTTTTGGCGGAGTCCTCGTCGACCCCTTTTTTGCGAAAATC
TATCTCGTCAGCCCCGAATGAACGAACGACCAGCTTCTCTTTTGCCTCGT
TCTCCTCTTCCCCTTTTTCGTGCCGTTTTTCCGGTTGTCTGACTGGTCTC
CCTCGTGTGCGGGGCGCGGCGCGTACGCGTGCAGCCGACTTGGCGCCAAC
GAGCGGTGCAACCAGTGCACGGGATGCCTGCTTCCCAACTGTGGAAAGTG
CTGGTGAGTCCTTGTTTTTTCCTATTTTGTAGGGGGCACAGCAGTCATGT
GTTGCTTGGGGTGGAGGGGCCGGCTCGTCTGAGATCTGGTGGCGTGCCCT
TCGTCTTGGATGTTTTGGCATGTAGCCAGTTATGTCACGACGGCTGTGAT
CTGTGATCTAGTTAGTGTCGGTCTCGGCTTCATTTTCGGATGAACACCAT
CAACGACGACGGCGGCGGCAACGATAACGACAAAATAAAAAATCAGGAAG
GGGCCCGCTGGCTGGCTGGCTCAGATCGCCCCCTTGTCGGGTATGGCGTT
TTCACCCTCGTTGTTGTTGTTGTTGTTGTTGCTGTTGCCTTAAGATTAAA
AAACGTCCCGATCTCTCTATCCAGTACACCTCCATGAGCCGGTACTAATC
CAACACCGACGCGGTCGATTCCCTTGGCCACAAGGCTGACTTACCCTAAA
AAGGCTTCCAACTGTTGTTGCTAAAAAATGTATTACCGCTTTTGAACCGT
CAGCCGTCTGCACGATGTAACCTGTTTTAAAGTCGTTCCAAAAGGGCGAC
TGTTTGTAGACACGCAGACTCTCCTTCACCGCCCCTGACTGCGGGCAGAA
AAGGAGCAAGCCCCACAGTTCTCGTGGTTTGTTTCTCGTCTATTGTACAT
CGGTATGTTTTCTTGCGAGAGCACGGTATATTTTTGTCCACTCTTGTTAG
TGCTTATTTTGGAACCACGAAAACGAAGAGCGGCAGCAGTAACACTTCGC
GGCTGCAACCAGCGCAAACTACTGAAGTATCGATGTCGGCAGCAACAAGC
GACAACAACCACGACAACACCGGCAGCAGAGCAGCGAACACACCATCCGC
CCGCTCACCGCGGGGGTAACAACAACACATCGGCCACATGAAGACTTTTT
TTTTCGCTTTCGGTTTGCACTCTCTCGTTCGAAGCCCTCCCTCTCCCCGC
CCCGCCCAAAAAAAAAAAAAAAAAAAACCAGCACACCCCCTTTCCCTCCG
CGCCCACACACACCAGCCGCCGGGGCGGCGGCGCGCGNNNNNNNNNNACA
AACCACCACACCACCCACAAAAAAACTTGTTTTGACGCTCACGGTCACCA
CCCACCCGCACAACCCCCCCCCCCCCCCCACCCCACAAAAAAAAAAAAAA
AAAAAAGACATGAACGCACACTTTCTATCCGTGCACACACACATCAGCAG
CTGATGTCGCCATTCCCTGCCGACCGAAACTCGCCTCCGTTTCGACACCG
ATATATGCAGGGGCTGCCAGCACCGCGTGGAGTACGGTGGCTCCGGCCAC
AGGAACCAGCCCTGCGTGGACCGATGGTGCCGCACCAAGGCCGCCCAGCG
GGACGCCAACAAGGCCGACAAGACCCGCCGCAAGAAGCGTCCGTTCGAGT
CGAGGTCAGTTTAGTTCGTCAGTCAGAGAGAGAGAGAGAGAGTGGTAGCG
GGCCGGGGCAGACGCACGCACCGCGCTGGAAGGCGAGCGAGGTGTACACA
CGGTACACGGGCGCTTCCAGTTCGCTTCGCTCCGCTTTGCTTCGCTGAAC
AGGCGGCAGGCGCTGCGGGGGCGCTCCAGTTCCGAGGTCTAGATAGGTCA
TGGGGTGTGTGAGGCATTTGGTGTGTTTTTTACGGCACGCGTGGTTTTGC
GTCACCCCCCCCATCGCGCGCTTCTTGACAGATGAACGGCGGACACACGC
GAAAGGGTCCCAGTACTGAGCAAAGCGTTTTCCACGTTTCTGGCGCGCTA
AACGCCGACGTGTCTTTATTGGCCAACCGGTTAGCGTGGTCGATGATGAA
TCAGAAAACACACTACCGGTTAGCGTGGTCGATGATGAATCAGAAAACAC
ACTAGTGTTGGAGATTGGTCCGGAAAAAATGTTCGATCGATATTTTGAAA
CTTTTTATCGACAATGAACCCTCGATACCGATACTCGGTTCGATACCTCA
AAAGGGGTCCCGTGGTGTCAATTTGGGGGTTCCGTGTGTTTTTCAACAGG
TAGGTGGTTAGGTTGTAAGCCCCGTGGGTAAAGAAAAGTGTTTCCGTGTG
TCAATTTGACCGTATCGAAAATATCGGCCTGCCAACTCGCAATCCCGATA
CAGCGTATTTGCCAATATATATCGAAAACAGATCGTATCTCGATATTGTA
CCCAATCTCCAACACTGGAAAAACACACACACACACACACACACAACATC
CACAAACTCAGCCGCGCGCGCGTATCTTGGACCGATTCACTCGCCGACTC
ACCAACCAGCGGCGAGGACTACGAAGGAGACTACGGCTTCGAGGACGGGG
GGGGTAGCAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig720:13611..16822+

>mRNA_L-elsbetiae_contig720.16043.1 ID=mRNA_L-elsbetiae_contig720.16043.1|Name=mRNA_L-elsbetiae_contig720.16043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig720:13611..16822+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCGCCAGCGCTACAGAGCTCCCACGGGCTCGGTCCACCGAAGGGGC
CGTGCTGGGCTACCACCGGGAGGCGCCAGCGCTACAGAGCTCCCACGGGC
TCGGTCCACCGAAGGGGCCGTGCTGGGCTACCACCGCCGACTTGGCGCCA
ACGAGCGGTGCAACCAGTGCACGGGATGCCTGCTTCCCAACTGTGGAAAG
TGCTGCCGACTTGGCGCCAACGAGCGGTGCAACCAGTGCACGGGATGCCT
GCTTCCCAACTGTGGAAAGTGCTGGGGCTGCCAGCACCGCGTGGAGTACG
GTGGCTCCGGCCACAGGAACCAGCCCTGCGTGGACCGATGGTGCCGCACC
AAGGCCGCCCAGCGGGACGCCAACAAGGCCGACAAGACCCGCCGCAAGAA
GCGTCCGTTCGAGTCGAGGGGCTGCCAGCACCGCGTGGAGTACGGTGGCT
CCGGCCACAGGAACCAGCCCTGCGTGGACCGATGGTGCCGCACCAAGGCC
GCCCAGCGGGACGCCAACAAGGCCGACAAGACCCGCCGCAAGAAGCGTCC
GTTCGAGTCGAGCGGCGAGGACTACGAAGGAGACTACGGCTTCGAGGACG
GGGGGGGTAGCAAGCGGCGAGGACTACGAAGGAGACTACGGCTTCGAGGA
CGGGGGGGGTAGCAAG
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