prot_L-elsbetiae_contig720.16043.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig720.16043.1
Unique Nameprot_L-elsbetiae_contig720.16043.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length111
Homology
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BLAST of mRNA_L-elsbetiae_contig720.16043.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.160e-48
Identity = 84/112 (75.00%), Postives = 89/112 (79.46%), Query Frame = 0 
Query:    5 ATELPRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVDRWCRTKAAQRDANKADKTRRKKR-------------PFESSGEDYEGDYG 103
            A   PR RSTEGAV G+HRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSG RNQPCVDRWCRTKAAQR+++K DK  R+KR             P ESSGEDYEGDYG
Sbjct:  901 ANGTPRVRSTEGAVEGFHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLESSGEDYEGDYG 1012
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BLAST of mRNA_L-elsbetiae_contig720.16043.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.210e-46
Identity = 83/121 (68.60%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:    5 ATELPRARSTEGAVLGYHR---------RLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVDRWCRTKAAQRDANKADKTRRKKR-------------PFESSGEDYEGDYG 103
            A E PR RSTEGAV G+HR         RLGANERCNQCTGCLLPNCGKCWGCQHR+EYGGSG RNQPCVDRWCRTKAAQR+++K DK  R+KR             P E+SGEDYEGDYG
Sbjct:  539 ANEPPRVRSTEGAVEGFHRNPRQTAPRRRLGANERCNQCTGCLLPNCGKCWGCQHRIEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLEASGEDYEGDYG 659
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig720.16043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.160e-4875.00CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI4.210e-4668.60CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002857Zinc finger, CXXC-typePFAMPF02008zf-CXXCcoord: 27..69
e-value: 1.1E-8
score: 34.9
IPR002857Zinc finger, CXXC-typePROSITEPS51058ZF_CXXCcoord: 20..70
score: 10.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig720contigL-elsbetiae_contig720:13611..16821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig720.16043.1mRNA_L-elsbetiae_contig720.16043.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig720 13611..16822 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig720.16043.1 ID=prot_L-elsbetiae_contig720.16043.1|Name=mRNA_L-elsbetiae_contig720.16043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
GGASATELPRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQH
RVEYGGSGHRNQPCVDRWCRTKAAQRDANKADKTRRKKRPFESSGEDYEG
DYGFEDGGGSK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002857Znf_CXXC