mRNA_L-elsbetiae_contig7167.15998.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7167.15998.1
Unique NamemRNA_L-elsbetiae_contig7167.15998.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: D7FSI9_ECTSI (Villin villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI9_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.660e-42
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEA 258
            R  +V CSTDSLN GDVFILDAGLKLYLWSGP+ANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWD+LGGYTE+
Sbjct:  107 RVSEVACSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDTLGGYTES 188          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A835YKP2_9STRA (Villin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.040e-24
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   22 QVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEAS 261
            +VP S  SLNTGDVFILDAGL LYL++G  A+  EKSKGV+++ RIKD +R GRA + F+ +DP NAEFWD LGGY E +
Sbjct:  151 EVPLSGSSLNTGDVFILDAGLTLYLYNGAGASRAEKSKGVETITRIKDDERGGRAQVVFIHEDPTNAEFWDLLGGYVEVT 230          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A835YLA3_9STRA (Villin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.970e-22
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTE 255
            R  +VP ++ SLNTGDVF+LDAGL LY++ G  A+  EK+KGV++  RIKD +R G+A +  + +DPEN EFWD LGGYTE
Sbjct:  142 RISEVPVASSSLNTGDVFVLDAGLALYVYVGAGASSAEKAKGVETAARIKDDERQGQAKVVLISEDPENKEFWDLLGGYTE 222          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A812THK7_SYMMI (Gel protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812THK7_SYMMI)

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-20
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGG 246
            R R+VP S  SLNTGDVFILD GLK+++++G  AN +EK+KG+    +I++ +R GRA +  LD+DP N+EFW  LGG
Sbjct:  106 RVREVPLSNASLNTGDVFILDTGLKIFVYNGATANRHEKAKGIDVANKIRNEERGGRAEIFMLDEDPNNSEFWTPLGG 183          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A4Q3BE30_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BE30_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 1.800e-20
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTE 255
            R   V  S  SLN GDVFILD GLK++L++GP AN +EK+KG++   RI   +R GRA + FLD DP NA+FW +LGG+ +
Sbjct:  104 RVSSVAVSKASLNRGDVFILDQGLKIFLFNGPGANKFEKAKGLEVASRINSDERGGRAELVFLDSDPRNADFWSALGGFVD 184          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A7S3MB93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB93_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.050e-19
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTE 255
            R  +VP S  SLN GDVFILDAGLK+YL++GP +N YEK+KGVQ    I + +R  RA +  + ++P++ EFW  LGG+ +
Sbjct:  103 RVSEVPLSRSSLNHGDVFILDAGLKIYLFNGPTSNNYEKAKGVQVASNINNDERGARAEIILVHENPKDEEFWGPLGGFVD 183          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A2P4WYP2_9STRA (Villin-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYP2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.040e-19
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEAS 261
            R  QVP  + SL   D ++LDAGL+LYL++G E N  EK K ++ + + ++  R GRA +TF+D+DPENA FWD+LGGY   S
Sbjct:  146 RVEQVPLQSSSLTVDDAYVLDAGLELYLYAGKETNRLEKGKALEFISKTREA-RGGRANVTFIDEDPENAAFWDALGGYEAVS 227          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A5D6XQ13_9STRA (HP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ13_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.690e-19
Identity = 38/83 (45.78%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEAS 261
            R  QVP S+ SL   DV++LDAGL+L++++G  AN  EK+KG++ ++++ +  R GRA +TF+D+DP NA FW++LGG+ + +
Sbjct:  134 RVAQVPLSSASLTADDVYVLDAGLELFVFNGKSANRMEKAKGLEFVRKLNNDARGGRANITFMDEDPRNAAFWNALGGFADVT 216          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A8K1CGN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGN4_PYTOL)

HSP 1 Score: 89.0 bits (219), Expect = 9.690e-19
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEAS 261
            R  QVP    SL   DV++LD GL+LY+++G +AN  EK+KG++ ++++ + DR  RA +TF+++DP+NA FW +LGGY + +
Sbjct:  146 RVTQVPVKNSSLTVDDVYVLDVGLELYVFNGKDANRQEKAKGLEFVRKLNNDDRGARANITFIEEDPKNATFWSTLGGYIDVT 228          
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Match: A0A225WW31_9STRA (Villin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WW31_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.770e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   13 RNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEAS 261
            R  QVP S+ SL   D ++LDAGL+LYL++G EAN  EK+K ++ + + ++  R GRA +TF+D+DPENA FW++LGG+   S
Sbjct:  146 RVEQVPLSSSSLTVDDAYVLDAGLELYLYAGKEANRLEKAKALEFVTKTREA-RGGRANVTFVDEDPENAAFWEALGGFETVS 227          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7167.15998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI9_ECTSI1.660e-4290.24Villin villin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835YKP2_9STRA2.040e-2462.50Villin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A835YLA3_9STRA2.970e-2256.79Villin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A812THK7_SYMMI1.100e-2053.85Gel protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A4Q3BE30_9BACT1.800e-2053.09Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A7S3MB93_9STRA3.050e-1950.62Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2P4WYP2_9STRA7.040e-1949.40Villin-like protein (Fragment) n=1 Tax=Phytophthor... [more]
A0A5D6XQ13_9STRA9.690e-1945.78HP domain-containing protein n=1 Tax=Pythium brass... [more]
A0A8K1CGN4_PYTOL9.690e-1944.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225WW31_9STRA9.770e-1949.40Villin n=1 Tax=Phytophthora megakarya TaxID=4795 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7167contigL-elsbetiae_contig7167:286..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue6.2e-36
Seed eggNOG ortholog2880.D7FSI9
KEGG koko:K05761
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament capping
EggNOG OGsKOG0443@1,KOG0443@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.5688543-CDS-L-elsbetiae_contig7167:285..3841622816796.5688543-CDS-L-elsbetiae_contig7167:285..384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7167 286..384 -
1691683820.211834-CDS-L-elsbetiae_contig7167:285..3841691683820.211834-CDS-L-elsbetiae_contig7167:285..384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7167 286..384 -
1622816796.5791965-CDS-L-elsbetiae_contig7167:837..9991622816796.5791965-CDS-L-elsbetiae_contig7167:837..999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7167 838..999 -
1691683820.2276278-CDS-L-elsbetiae_contig7167:837..9991691683820.2276278-CDS-L-elsbetiae_contig7167:837..999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7167 838..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7167.15998.1prot_L-elsbetiae_contig7167.15998.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7167 286..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7167.15998.1

>prot_L-elsbetiae_contig7167.15998.1 ID=prot_L-elsbetiae_contig7167.15998.1|Name=mRNA_L-elsbetiae_contig7167.15998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
MSSCRNRQVPCSTDSLNTGDVFILDAGLKLYLWSGPEANMYEKSKGVQSM
QRIKDTDRAGRATMTFLDDDPENAEFWDSLGGYTEAS
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mRNA from alignment at L-elsbetiae_contig7167:286..999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7167.15998.1 ID=mRNA_L-elsbetiae_contig7167.15998.1|Name=mRNA_L-elsbetiae_contig7167.15998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig7167:286..999- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCGTGTCGAAACCGGCAGGTGCCCTGCTCCACGGACAGCCTCAA CACTGGGGATGTCTTCATCCTTGACGCGGGCCTGAAGCTGTACCTGTGGA GCGGGCCCGAAGCCAACATGTACGAGAAGTCCAAGGGCGTGCAATCCATG CAGCGCATCAAGGTAATATACAGACATCACATAACGCACCGTAATTATTT TTGGGTTGAAATGTGAGTTCTTCCGAACGTAGTTTCGCCGCTGTTTTTTC ACGAGTTGTAACTCTCCTCCCATCCCTTCGTATTGTACTATAATACATTC TCCACATTCTCCATAAATCCGCGCCGTGTTTATTTGACGGAGATTTTTCT TGTCGGGGTTGACGCAACCGCTGTATCTCTCTTTGATGGTGGTACTATCT TATTGTGCTTGATTCGGGACTCGTTTGTTGTCGGGGGGGTTCAGGTTTCA TTTCGTGTGGTGGTTTATGTTCTAAACTTTTCGCGGATCTCATCTTCCGT AAATCTGGTATTTTTGATGGATTTCTCGGCATTTGGCAAATGGCGACTGA TATGTACATACCCGACACCGGCGCCTGTCACGGACATACGCTGGCACCGG GGCACTCGCTTACAGGACACGGACCGGGCAGGGCGTGCGACGATGACCTT CTTGGACGACGACCCGGAGAACGCAGAGTTCTGGGACAGCCTCGGGGGTT ACACGGAGGCAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7167:286..999-

>mRNA_L-elsbetiae_contig7167.15998.1 ID=mRNA_L-elsbetiae_contig7167.15998.1|Name=mRNA_L-elsbetiae_contig7167.15998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig7167:286..999- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCGTGTCGAAACCGGCAGGTGCCCTGCTCCACGGACAGCCTCAA
CACTGGGGATGTCTTCATCCTTGACGCGGGCCTGAAGCTGTACCTGTGGA
GCGGGCCCGAAGCCAACATGTACGAGAAGTCCAAGGGCGTGCAATCCATG
CAGCGCATCAAGATGTCGTCGTGTCGAAACCGGCAGGTGCCCTGCTCCAC
GGACAGCCTCAACACTGGGGATGTCTTCATCCTTGACGCGGGCCTGAAGC
TGTACCTGTGGAGCGGGCCCGAAGCCAACATGTACGAGAAGTCCAAGGGC
GTGCAATCCATGCAGCGCATCAAGGACACGGACCGGGCAGGGCGTGCGAC
GATGACCTTCTTGGACGACGACCCGGAGAACGCAGAGTTCTGGGACAGCC
TCGGGGGTTACACGGAGGCAAGCGACACGGACCGGGCAGGGCGTGCGACG
ATGACCTTCTTGGACGACGACCCGGAGAACGCAGAGTTCTGGGACAGCCT
CGGGGGTTACACGGAGGCAAGC
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