mRNA_L-elsbetiae_contig7097.15899.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7097.15899.1
Unique NamemRNA_L-elsbetiae_contig7097.15899.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5KL08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL08_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.380e-53
Identity = 101/183 (55.19%), Postives = 116/183 (63.39%), Query Frame = -1
Query:  215 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*G-----GLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDGLWWSGKISTKQDDSYIARLFDDTGPRRLHLPPTSYSTALDAAIGSWCLEKHRSRPLG 748
            L VD+IS HQLVRG     RR +   L  + +  L T        L  +  HILLYWS  + Q  QGNRAYR   +RAA RELAR+RG+RY   G  LV  + W  RFSSSPLP+ ARLWYKA+DGLWW+G I   Q DSYI R  DD GP  L LP   YSTAL+A  GSWCLEKHRSR +G
Sbjct:  208 LKVDYISGHQLVRG-----RRGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDGLWWTGLIGAHQGDSYIVRFLDDPGPTVLPLPEDLYSTALNAVCGSWCLEKHRSRLVG 385          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.340e-52
Identity = 102/183 (55.74%), Postives = 117/183 (63.93%), Query Frame = -1
Query:  215 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*G-----GLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDGLWWSGKISTKQDDSYIARLFDDTGPRRLHLPPTSYSTALDAAIGSWCLEKHRSRPLG 748
            L VD+IS HQLVRG     R  +   L  + +  L T        L  +  HILLYWS  + Q  QGNRAYR   +RAA RELAR+RG+RY   G  LV  + W  RFSSSPLP+ ARLWYKA+DGLWW+G+I   Q DSYI R  DD GP  L LP   YSTAL+A  GSWCLEKHRSRPLG
Sbjct: 2004 LKVDYISGHQLVRG-----RSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDGLWWTGRIGAHQGDSYIVRFLDDPGPSVLPLPEDLYSTALNAVCGSWCLEKHRSRPLG 2181          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5KZ08_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ08_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.770e-39
Identity = 82/166 (49.40%), Postives = 95/166 (57.23%), Query Frame = -1
Query:  251 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDGLWWSGKISTKQDDSYIARLFDDTGPRRLHLPPTSYSTALDAAIGS 748
            L+VD+IS HQLVRG   +              P       L     HILLYWS   CQ  QG+  YRV  +RAA +ELAR+RG+RY   G  LV    W +RFS+SPLP+ ARLWYKA DGLWW+G+I   Q  SYI R  DD GP  L LP    ST LDA  GS
Sbjct:  368 LEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGHHTYRVGRTRAAQQELARNRGERYVHPGDDLVLNATWLHRFSTSPLPVGARLWYKACDGLWWTGRIGAHQGGSYIVRFLDDPGPSVLPLPAHLNSTGLDAVCGS 533          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5JZB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.190e-35
Identity = 81/166 (48.80%), Postives = 92/166 (55.42%), Query Frame = -1
Query:  248 LVRGARWLPRRFI*DTLG*S---WYPV------LGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDGLWWSGKISTKQDDSYIARLFDDTGPRRLHLPPTSYSTALDAAIGSW 718
            LV    WL RRF    L      WY         G    L      I+L WS   CQ  QGN  YRVA +RAA RELAR+RG+R+   G  LV    W  RFS+SPLP+ ARLWYKA+DGLWW+G+I   Q  S I R  DD GP  L LP   +STALDA  GSW
Sbjct: 1052 LVLNVTWL-RRFSTSPLPVGARLWYKARDGLWWTGGESDLDQFRRRIILNWSREACQSKQGNCTYRVARTRAAQRELARNRGERFLPPGADLVLNVTWLRRFSTSPLPVGARLWYKARDGLWWTGRIGAHQGGSCIVRFLDDPGPSVLPLPAHLFSTALDAVCGSW 1216          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5J9W8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W8_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.020e-31
Identity = 72/143 (50.35%), Postives = 87/143 (60.84%), Query Frame = -1
Query:  335 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*G-----GLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDGLWWSGKISTKQDDSYIA 748
            L VD+IS HQLVRG     R  +   L  + +  L T        L  +  HILLYWS  + Q  QGNRAYR   +RAA RELAR+RG+RY   G  LV  + W  RFSSSPLP+ ARLWYKA+D LWW+G+I   Q DSY +
Sbjct:  990 LKVDYISGHQLVRG-----RSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDRLWWTGRIGAHQGDSYCS 1127          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5KRJ7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.770e-23
Identity = 64/123 (52.03%), Postives = 73/123 (59.35%), Query Frame = -1
Query:  383 LDVDFISAHQLVRGARW-LPRRFI*DTLG*SWYPVLGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDGL 748
            L+VD+ S HQLVRG    L   +    LG +  P       L     HILL W   VCQ  QGNRAYRVA +RAA RELARSRG+ Y  +G  LV    W   FS+SPLP+ ARLWYKA DGL
Sbjct:  874 LEVDYTSGHQLVRGRSGVLAVLYQTHWLGLTT-PSWERESDLDRFRRHILLRWFREVCQSKQGNRAYRVARTRAAQRELARSRGEHYLPHGADLVLHATWLRGFSTSPLPVGARLWYKASDGL 995          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5KTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.970e-23
Identity = 63/122 (51.64%), Postives = 74/122 (60.66%), Query Frame = -1
Query:  386 LDVDFISAHQLVRGARW-LPRRFI*DTLG*SWYPVLGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLWYKAQDG 748
            L+VD+IS HQLVRG    L   +    +G +  P       L     HILLY S   CQ  QGNR YRVA +RAA RELAR+RG+RY   G  LV    W  RFS+SPLP+ ARLWYKA+DG
Sbjct: 1278 LEVDYISGHQLVRGRSGALAVLYQTHWVGLTT-PSWERESDLDLFRRHILLYLSREACQSKQGNRTYRVARTRAAQRELARNRGERYLPPGADLVLNATWLRRFSTSPLPVGARLWYKARDG 1398          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.600e-22
Identity = 58/115 (50.43%), Postives = 65/115 (56.52%), Query Frame = -1
Query:  404 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARLW 748
            L+VD+IS HQLVRG   +              P       L     HILLYWS   CQ  QGNR YRVA +RAA RELAR+RG+RYF  G   V    W  RFS+SPLPI ARLW
Sbjct: 1608 LEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGNRTYRVARTRAAQRELARNRGERYFPPGADFVLSATWLRRFSTSPLPIGARLW 1722          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5KDL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.610e-18
Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  407 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRYFDNGYSLVSVDVWSNRFSSSPLPINARL 748
            L+VD+IS HQLVRG   +              P       L     HILLYWS   CQ  + NR YRVA +RAA RELAR+RG+RY   G  LV    W  RFS+SPLP+ ARL
Sbjct:  860 LEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKRDNRTYRVARTRAAQRELARNRGERYLPPGADLVLNATWLRRFSTSPLPVGARL 973          
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Match: A0A6H5KJ79_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ79_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.460e-11
Identity = 42/86 (48.84%), Postives = 48/86 (55.81%), Query Frame = -1
Query:  491 LDVDFISAHQLVRGARWLPRRFI*DTLG*SWYPVLGT*GGLGAASPHILLYWSGTVCQHMQGNRAYRVAHSRAAHRELARSRGDRY 748
            L+VD+IS HQLVRG   +              P       L     HILLYWS   CQ  QGNR YRVA +RAA RELAR+RG+RY
Sbjct:  514 LEVDYISGHQLVRGRSGVLAVLCQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGNRTYRVARTRAAQRELARNRGERY 599          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7097.15899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KL08_9PHAE1.380e-5355.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK47_9PHAE3.340e-5255.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ08_9PHAE2.770e-3949.40Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JZB2_9PHAE1.190e-3548.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9W8_9PHAE4.020e-3150.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRJ7_9PHAE2.770e-2352.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTX6_9PHAE3.970e-2351.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVY6_9PHAE8.600e-2250.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDL4_9PHAE1.610e-1847.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ79_9PHAE7.460e-1148.84Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7097contigL-elsbetiae_contig7097:1814..2579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.216763-UTR-L-elsbetiae_contig7097:1813..21111622816787.216763-UTR-L-elsbetiae_contig7097:1813..2111Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7097 1814..2111 +
1691683813.1225958-UTR-L-elsbetiae_contig7097:1813..21111691683813.1225958-UTR-L-elsbetiae_contig7097:1813..2111Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7097 1814..2111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.2310355-CDS-L-elsbetiae_contig7097:2111..25791622816787.2310355-CDS-L-elsbetiae_contig7097:2111..2579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7097 2112..2579 +
1691683813.1404576-CDS-L-elsbetiae_contig7097:2111..25791691683813.1404576-CDS-L-elsbetiae_contig7097:2111..2579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7097 2112..2579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7097.15899.1prot_L-elsbetiae_contig7097.15899.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7097 2112..2579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7097.15899.1

>prot_L-elsbetiae_contig7097.15899.1 ID=prot_L-elsbetiae_contig7097.15899.1|Name=mRNA_L-elsbetiae_contig7097.15899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MQTSGSGVVEEASDVGVILFGRDFSRPPQAVLSLVPEAGVDGQGGGRETI
GPNVDRNQAVAIVKVAVSSRSGKFAVSRTRVGHAVSAVALHVLANGARPV
QQNMRRCCSKSASRSQDGVPRLTQCVLYKTARKPPRAPHELMSGDEIHVE
VVGRRQ
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mRNA from alignment at L-elsbetiae_contig7097:1814..2579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7097.15899.1 ID=mRNA_L-elsbetiae_contig7097.15899.1|Name=mRNA_L-elsbetiae_contig7097.15899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=766bp|location=Sequence derived from alignment at L-elsbetiae_contig7097:1814..2579+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTACTGTCTGTAAGAAAACACTCAGACACCGGCGACGTGCGGGAATC CGCAAGAAAAACGCTCAGACAACGGCGAGGTGCGGGAGTCTGCAAGAAGA ACACTCCAAACCAAAGGAAAGCGAAGCAAAGCGAAGTAAAACAAAACTAA TCAGGAAGCATTGACCGAAGGCAAGGCTGTGGCCAGAGGCAACACGTCCG ATCCCAGTGTCGGCGCCTAGGGGGCGGGAACGGTGTTTTTCCAAGCACCA TGATCCAATGGCTGCGTCCAAGGCGGTGCTGTACGAGGTCGGCGGAAGAT GCAGACGTCGGGGTCCGGTGTCGTCGAAGAGGCGAGCGATGTAGGAGTCA TCTTGTTTGGTCGAGATTTTTCCAGACCACCACAAGCCGTCCTGAGCCTT GTACCAGAGGCGGGCGTTGATGGGCAGGGGGGAGGACGAGAAACGATTGG ACCAAACGTCGACCGAAACCAGGCTGTAGCCATTGTCAAAGTAGCGGTCT CCTCTCGATCGGGCAAGTTCGCGGTGAGCCGCACGCGAGTGGGCCACGCG GTAAGCGCGGTTGCCTTGCATGTGCTGGCAAACGGTGCCAGACCAGTACA GCAAAATATGCGGCGATGCTGCTCCAAGTCCGCCTCACGTTCCCAAGACG GGGTACCAAGATTAACCCAGTGTGTCTTATATAAAACGGCGAGGAAGCCA CCGCGCGCCCCGCACGAGTTGATGAGCGGAGATGAAATCCACGTCGAGGT AGTCGGCCGAAGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7097:1814..2579+

>mRNA_L-elsbetiae_contig7097.15899.1 ID=mRNA_L-elsbetiae_contig7097.15899.1|Name=mRNA_L-elsbetiae_contig7097.15899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig7097:1814..2579+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGACGTCGGGGTCCGGTGTCGTCGAAGAGGCGAGCGATGTAGGAGT
CATCTTGTTTGGTCGAGATTTTTCCAGACCACCACAAGCCGTCCTGAGCC
TTGTACCAGAGGCGGGCGTTGATGGGCAGGGGGGAGGACGAGAAACGATT
GGACCAAACGTCGACCGAAACCAGGCTGTAGCCATTGTCAAAGTAGCGGT
CTCCTCTCGATCGGGCAAGTTCGCGGTGAGCCGCACGCGAGTGGGCCACG
CGGTAAGCGCGGTTGCCTTGCATGTGCTGGCAAACGGTGCCAGACCAGTA
CAGCAAAATATGCGGCGATGCTGCTCCAAGTCCGCCTCACGTTCCCAAGA
CGGGGTACCAAGATTAACCCAGTGTGTCTTATATAAAACGGCGAGGAAGC
CACCGCGCGCCCCGCACGAGTTGATGAGCGGAGATGAAATCCACGTCGAG
GTAGTCGGCCGAAGGCAGATGCAGACGTCGGGGTCCGGTGTCGTCGAAGA
GGCGAGCGATGTAGGAGTCATCTTGTTTGGTCGAGATTTTTCCAGACCAC
CACAAGCCGTCCTGAGCCTTGTACCAGAGGCGGGCGTTGATGGGCAGGGG
GGAGGACGAGAAACGATTGGACCAAACGTCGACCGAAACCAGGCTGTAGC
CATTGTCAAAGTAGCGGTCTCCTCTCGATCGGGCAAGTTCGCGGTGAGCC
GCACGCGAGTGGGCCACGCGGTAAGCGCGGTTGCCTTGCATGTGCTGGCA
AACGGTGCCAGACCAGTACAGCAAAATATGCGGCGATGCTGCTCCAAGTC
CGCCTCACGTTCCCAAGACGGGGTACCAAGATTAACCCAGTGTGTCTTAT
ATAAAACGGCGAGGAAGCCACCGCGCGCCCCGCACGAGTTGATGAGCGGA
GATGAAATCCACGTCGAGGTAGTCGGCCGAAGGCAG
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