mRNA_L-elsbetiae_contig7075.15880.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7075.15880.1
Unique NamemRNA_L-elsbetiae_contig7075.15880.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A6H5KJ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ07_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.360e-21
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    4 PATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVR 150
            P  + LLYVGDHMFADILRS RTLGWRTCL+VPELESEMNANRENR +R
Sbjct:   50 PVVQKLLYVGDHMFADILRSKRTLGWRTCLIVPELESEMNANRENRDLR 98
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A6H5JY87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY87_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.610e-19
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:   19 LLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVR 150
            LLYVGDHMFADILRS RTLGWRTCL+VPELESEMNANRENR +R
Sbjct:  827 LLYVGDHMFADILRSKRTLGWRTCLIVPELESEMNANRENRDLR 870
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: D7FMF3_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 9.110e-18
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:   19 LLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVR 150
            LLYVGDHMFADILRS RTLGWRTCL+VPELE+EM+ANRENR +R
Sbjct:  443 LLYVGDHMFADILRSKRTLGWRTCLIVPELENEMSANRENRDLR 486
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A7S2WQY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQY2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.440e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 ATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANR 132
            A + LLYVGDHM++DILRS RTLGWRTCLV+PELE EMN  R
Sbjct:   25 AGERLLYVGDHMYSDILRSKRTLGWRTCLVIPELEVEMNTYR 66
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A7S0SZA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZA1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.860e-12
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   19 LLYVGDHMFADILRSTRTLGWRTCLVVPELESEMN-ANRENR 141
            +LYVGDHMFADILRS RTLGWRTCL++PELE E+  A RE++
Sbjct:  247 ILYVGDHMFADILRSKRTLGWRTCLIIPELEHELETAQRESK 288
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A7S2EHS9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHS9_TRICV)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-12
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VPATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVRR 153
            V A + ++YVGDH++AD+LRS RTLGWR+C +VPEL  EM   RE   +RR
Sbjct:   71 VEAGEEIMYVGDHLYADVLRSKRTLGWRSCFIVPELAEEMRVFREQLPLRR 121
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A835Z4H4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.250e-12
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   19 LLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVR 150
            LLYVGDHMF+DILRS RTLGWRTCL+VPELE+E+  +  +  +R
Sbjct:  338 LLYVGDHMFSDILRSKRTLGWRTCLIVPELENEIATHNRHSELR 381
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A7S1ULD4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1ULD4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.090e-12
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VPATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVRR 153
            V A + +LYVGDH++AD+LRS RTLGWR+  +VPELE EM    EN+ V R
Sbjct:  395 VDAGEEILYVGDHLYADVLRSKRTLGWRSAFIVPELEEEMRVFDENKNVLR 445
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: A0A7S1ZFY4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFY4_TRICV)

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-12
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VPATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVRR 153
            V A + ++YVGDH++AD+LRS RTLGWR+C +VPEL  EM   RE   +RR
Sbjct:  445 VEAGEEIMYVGDHLYADVLRSKRTLGWRSCFIVPELAEEMRVFREQLPLRR 495
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BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Match: R7QL05_CHOCR (Cytosolic IMP-GMP specific 5'-nucleotidase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL05_CHOCR)

HSP 1 Score: 67.4 bits (163), Expect = 1.540e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 VPATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMN 123
            V +  HLLYVGDH+F+D+LRS RTLGWRT L+VPELE E+N
Sbjct:  282 VQSGTHLLYVGDHIFSDVLRSKRTLGWRTMLIVPELEHEIN 322
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7075.15880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ07_9PHAE7.360e-2183.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY87_9PHAE7.610e-1990.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF3_ECTSI9.110e-1886.365'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A7S2WQY2_9STRA1.440e-1476.19Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0SZA1_9STRA1.860e-1273.81Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2EHS9_TRICV2.630e-1256.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A835Z4H4_9STRA3.250e-1268.185'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S1ULD4_9STRA6.090e-1258.82Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1ZFY4_TRICV6.100e-1256.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
R7QL05_CHOCR1.540e-1170.73Cytosolic IMP-GMP specific 5'-nucleotidase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7075contigL-elsbetiae_contig7075:296..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog2880.D7FMF3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-nucleotidase activity
EggNOG OGsKOG2469@1,KOG2469@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.168752-CDS-L-elsbetiae_contig7075:295..4931622816785.168752-CDS-L-elsbetiae_contig7075:295..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7075 296..493 +
1691683811.4828925-CDS-L-elsbetiae_contig7075:295..4931691683811.4828925-CDS-L-elsbetiae_contig7075:295..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7075 296..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7075.15880.1prot_L-elsbetiae_contig7075.15880.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7075 296..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7075.15880.1

>prot_L-elsbetiae_contig7075.15880.1 ID=prot_L-elsbetiae_contig7075.15880.1|Name=mRNA_L-elsbetiae_contig7075.15880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
VPATKHLLYVGDHMFADILRSTRTLGWRTCLVVPELESEMNANRENRGVR
RIKVSFYGICCCWSM*
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mRNA from alignment at L-elsbetiae_contig7075:296..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7075.15880.1 ID=mRNA_L-elsbetiae_contig7075.15880.1|Name=mRNA_L-elsbetiae_contig7075.15880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig7075:296..493+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCCGCAACAAAACATCTTCTGTACGTGGGCGACCATATGTTCGCGGA
CATTTTGAGGTCTACGAGGACGCTGGGCTGGCGAACTTGCCTCGTCGTAC
CGGAGCTGGAGAGCGAAATGAACGCCAACCGAGAAAATCGCGGTGTCAGG
CGAATAAAGGTTTCTTTCTATGGTATTTGTTGTTGTTGGTCGATGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7075:296..493+

>mRNA_L-elsbetiae_contig7075.15880.1 ID=mRNA_L-elsbetiae_contig7075.15880.1|Name=mRNA_L-elsbetiae_contig7075.15880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig7075:296..493+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCCGCAACAAAACATCTTCTGTACGTGGGCGACCATATGTTCGCGGA
CATTTTGAGGTCTACGAGGACGCTGGGCTGGCGAACTTGCCTCGTCGTAC
CGGAGCTGGAGAGCGAAATGAACGCCAACCGAGAAAATCGCGGTGTCAGG
CGAATAAAGGTTTCTTTCTATGGTATTTGTTGTTGTTGGTCGATGTAGGT
TCCCGCAACAAAACATCTTCTGTACGTGGGCGACCATATGTTCGCGGACA
TTTTGAGGTCTACGAGGACGCTGGGCTGGCGAACTTGCCTCGTCGTACCG
GAGCTGGAGAGCGAAATGAACGCCAACCGAGAAAATCGCGGTGTCAGGCG
AATAAAGGTTTCTTTCTATGGTATTTGTTGTTGTTGGTCGATGTAG
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