mRNA_L-elsbetiae_contig7053.15857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI) HSP 1 Score: 271 bits (692), Expect = 4.640e-81 Identity = 143/167 (85.63%), Postives = 151/167 (90.42%), Query Frame = 1 Query: 1 PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501 PG T FSSVASAFDFQHH+GSDPASELLVLKHILTRECLLSRLEAVC LRKRFQL PAA TT + + TAR+ E +GVV LLS+MR ATVAVIEAISVWRKDMTGHLP+AFVWHGDNYLLKITNDLNFLAGVQPLV+TLK MHPARFCRNPLMLPQTLDEQRRDG Sbjct: 49 PGTT-FSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQL-PAAKTT-SDNGTTARMTEDGDGVVALLSRMRDATVAVIEAISVWRKDMTGHLPTAFVWHGDNYLLKITNDLNFLAGVQPLVDTLK-MHPARFCRNPLMLPQTLDEQRRDG 211
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A6H5KWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP4_9PHAE) HSP 1 Score: 266 bits (679), Expect = 2.590e-79 Identity = 143/167 (85.63%), Postives = 147/167 (88.02%), Query Frame = 1 Query: 1 PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501 PG T FSSVASAFDFQHH+GSDPASELLVLKHILTRECLLSRLEAVC LRKRFQL PAA T S + TAR E GVV LLS+MR ATVAVIEAISVWRKDMTGHLP AFVWHGDNYLLKITNDLNFLAGVQPLV+TLK MHPARFCRNPLMLPQTLDEQRRDG Sbjct: 49 PGTT-FSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQL-PAAKATADSGT-TARNTEDGNGVVALLSRMRDATVAVIEAISVWRKDMTGHLPPAFVWHGDNYLLKITNDLNFLAGVQPLVDTLK-MHPARFCRNPLMLPQTLDEQRRDG 211
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A836CMT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT4_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.300e-37 Identity = 87/174 (50.00%), Postives = 110/174 (63.22%), Query Frame = 1 Query: 10 TSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPS-------------AFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQR 492 ++F VA+AFDFQHH+G+DP +EL VLK IL RE L+ RLE + +QLR+ PA T +DS GV++LL +R TV VI A+ WR + +G P AFVW G+NYLLK NDLNFLAG++PLV L+ MHPA+ CRNPLML +TLDEQR Sbjct: 30 SAFCGVAAAFDFQHHVGTDPQAELQVLKKILIREGLMERLEGLGEQLRRNSLASPADGT---ADS----------GVLELLLSLRDVTVEVIGAVLRWR-EASGVAPPXXXXXXXXXXXXXAFVWRGENYLLKAVNDLNFLAGIKPLVRALR-MHPAKLCRNPLMLQETLDEQR 188
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: F0YG15_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG15_AURAN) HSP 1 Score: 136 bits (342), Expect = 5.820e-34 Identity = 87/188 (46.28%), Postives = 107/188 (56.91%), Query Frame = 1 Query: 1 PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDM--------------------TGHLPSAFVWHGDNYLLKIT-NDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501 PGA FSSVA+AFDF+HH G+DPASELLVLK IL RE LLSRLE + + L +R A A R VDL+SK+R AT+ V EAI+ WR TG L AF+WHG NY LK+ +D++F+ ++PL L V A+ RNPLMLP+TLDE R DG Sbjct: 3010 PGAAGFSSVAAAFDFEHHAGTDPASELLVLKAILNREALLSRLEVLAEDLVRRAHRAWALREAPPPLDAPQR-----RVAVDLMSKLRDATLGVCEAIAHWRSASAALAAEVAREESGFAPESYETGGLEHAFLWHGRNYALKMAVSDMDFVGAIEPLAEALGVPS-AKMRRNPLMLPRTLDEARADG 3191
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A024TBH3_9STRA (MT domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBH3_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.190e-12 Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 1 Query: 61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQ 489 SDP E+ ++K IL RE L++RL+ +LR D ++ G V+ LL R A++AVIEAI W + + +P ++W+G +Y+ ++ +DLNFL V + L V P RNP M+P ++ ++ Sbjct: 180 SDPQDEIRIIKAILIREGLVTRLKGTTQKLR-------------IGDHSSLHHGPEGSSVLTLLLLTREASLAVIEAIVRWYQTLA--VPRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVA-PRSMVRNPFMMPTSIADR 306
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A485LP34_9STRA (Aste57867_23249 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP34_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.210e-12 Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 1 Query: 61 SDPASELLVLKHILTRECLLSRLEAVCDQLR--KRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501 +DP E+ ++K IL RE LLSRL+ ++R LH T D V+ LL R +++AVI+A+ W + + +P A++W+G +Y+ ++ +DLNFL V L + L V P RNP M+PQ++ ++ D Sbjct: 121 TDPQDEIRIMKAILIREGLLSRLKGTMKKIRIGDHTSLH-------TQDG---------NSVLTLLLHTRESSLAVIDALCRWYQTLA--VPRAYIWNGTSYIHRMLDDLNFLGEVPVLADALGVA-PRAMIRNPFMMPQSIADRDLDA 250
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A067BZM2_SAPPC (MT domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BZM2_SAPPC) HSP 1 Score: 73.2 bits (178), Expect = 5.460e-12 Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 1 Query: 61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTL 480 +DP E+LV+K IL RE L+SRL+ V + ++ T+ ++++ ++ +L + R A+VAV++A+ W+ + P +++ G +YL ++ +DLNFLA + L + L V P RNP MLP ++ Sbjct: 152 TDPKHEILVMKSILIREGLVSRLKGVAQR--------------ISIGDVTSLKVQNADSLLSILLQTRDASVAVVQALYDWQSQLPS--PQTYIFSGKSYLHRMLDDLNFLAEIPRLADVLGVA-PESMVRNPFMLPTSI 274
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: T0Q057_SAPDV (MT domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q057_SAPDV) HSP 1 Score: 73.2 bits (178), Expect = 5.820e-12 Identity = 43/140 (30.71%), Postives = 80/140 (57.14%), Query Frame = 1 Query: 61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTL 480 +DP E+LV+K+IL RE L+SRL+ V ++ ++ T+ ++++ ++ +L + R A+VAV++A+ W+ + P +++ G +Y+ ++ +DLNFLA + L + L V P RNP MLP ++ Sbjct: 153 TDPKHEILVMKNILIREGLVSRLKGVAER--------------ISIGDVTSLKVQNADSLLSILLQTRDASVAVVQALYEWQLQLPS--PQTYIFSGKSYVHRMLDDLNFLAEIPRLADVLGVA-PESMVRNPFMLPTSI 275
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A418B1H0_9STRA (MT domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B1H0_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.020e-11 Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 1 Query: 61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQ 489 +DP E+ ++K IL RE L++RL+ +LR D ++ G V+ LL R A++AVIEAI W + + +P ++W+G +Y+ ++ +DLNFL V + L V P RNP M+P ++ ++ Sbjct: 104 TDPQDEIRIIKAILIREGLVTRLKGTTQKLR-------------IGDHSSLHHGPDGSSVLTLLLLTREASLAVIEAIVRWYQTLA--VPRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVA-PRSMVRNPFMMPTSIADR 230
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: W4FD56_9STRA (MT domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD56_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.170e-10 Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQ 489 SDP E+ ++K IL RE L+S+L+ Q+R + S + G S V+ LL + R +++AVIEA+ W + ++ +P ++W+G +YL ++ +DLNFL V + L V + RNP M+P ++ ++ Sbjct: 186 SDPQDEIRIMKAILIREGLVSKLKGTMHQIR------------LGDHSVLSCDGNS---VLTLLLQTRDSSLAVIEAMVRWFQSLS--VPRPYIWNGHSYLHRMLDDLNFLGDVHEMAEALGVASHS-MKRNPFMMPTSISDR 310 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7053.15857.1 >prot_L-elsbetiae_contig7053.15857.1 ID=prot_L-elsbetiae_contig7053.15857.1|Name=mRNA_L-elsbetiae_contig7053.15857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLback to top mRNA from alignment at L-elsbetiae_contig7053:6593..7311- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7053.15857.1 ID=mRNA_L-elsbetiae_contig7053.15857.1|Name=mRNA_L-elsbetiae_contig7053.15857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=719bp|location=Sequence derived from alignment at L-elsbetiae_contig7053:6593..7311- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7053:6593..7311- >mRNA_L-elsbetiae_contig7053.15857.1 ID=mRNA_L-elsbetiae_contig7053.15857.1|Name=mRNA_L-elsbetiae_contig7053.15857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig7053:6593..7311- (Laminarionema elsbetiae ELsaHSoW15)back to top |