mRNA_L-elsbetiae_contig7053.15857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7053.15857.1
Unique NamemRNA_L-elsbetiae_contig7053.15857.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 4.640e-81
Identity = 143/167 (85.63%), Postives = 151/167 (90.42%), Query Frame = 1
Query:    1 PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501
            PG T FSSVASAFDFQHH+GSDPASELLVLKHILTRECLLSRLEAVC  LRKRFQL PAA TT + +  TAR+ E  +GVV LLS+MR ATVAVIEAISVWRKDMTGHLP+AFVWHGDNYLLKITNDLNFLAGVQPLV+TLK MHPARFCRNPLMLPQTLDEQRRDG
Sbjct:   49 PGTT-FSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQL-PAAKTT-SDNGTTARMTEDGDGVVALLSRMRDATVAVIEAISVWRKDMTGHLPTAFVWHGDNYLLKITNDLNFLAGVQPLVDTLK-MHPARFCRNPLMLPQTLDEQRRDG 211          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A6H5KWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP4_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 2.590e-79
Identity = 143/167 (85.63%), Postives = 147/167 (88.02%), Query Frame = 1
Query:    1 PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501
            PG T FSSVASAFDFQHH+GSDPASELLVLKHILTRECLLSRLEAVC  LRKRFQL PAA  T  S + TAR  E   GVV LLS+MR ATVAVIEAISVWRKDMTGHLP AFVWHGDNYLLKITNDLNFLAGVQPLV+TLK MHPARFCRNPLMLPQTLDEQRRDG
Sbjct:   49 PGTT-FSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQL-PAAKATADSGT-TARNTEDGNGVVALLSRMRDATVAVIEAISVWRKDMTGHLPPAFVWHGDNYLLKITNDLNFLAGVQPLVDTLK-MHPARFCRNPLMLPQTLDEQRRDG 211          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A836CMT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.300e-37
Identity = 87/174 (50.00%), Postives = 110/174 (63.22%), Query Frame = 1
Query:   10 TSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPS-------------AFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQR 492
            ++F  VA+AFDFQHH+G+DP +EL VLK IL RE L+ RLE + +QLR+     PA  T   +DS          GV++LL  +R  TV VI A+  WR + +G  P              AFVW G+NYLLK  NDLNFLAG++PLV  L+ MHPA+ CRNPLML +TLDEQR
Sbjct:   30 SAFCGVAAAFDFQHHVGTDPQAELQVLKKILIREGLMERLEGLGEQLRRNSLASPADGT---ADS----------GVLELLLSLRDVTVEVIGAVLRWR-EASGVAPPXXXXXXXXXXXXXAFVWRGENYLLKAVNDLNFLAGIKPLVRALR-MHPAKLCRNPLMLQETLDEQR 188          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: F0YG15_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG15_AURAN)

HSP 1 Score: 136 bits (342), Expect = 5.820e-34
Identity = 87/188 (46.28%), Postives = 107/188 (56.91%), Query Frame = 1
Query:    1 PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDM--------------------TGHLPSAFVWHGDNYLLKIT-NDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501
            PGA  FSSVA+AFDF+HH G+DPASELLVLK IL RE LLSRLE + + L +R     A         A  R        VDL+SK+R AT+ V EAI+ WR                       TG L  AF+WHG NY LK+  +D++F+  ++PL   L V   A+  RNPLMLP+TLDE R DG
Sbjct: 3010 PGAAGFSSVAAAFDFEHHAGTDPASELLVLKAILNREALLSRLEVLAEDLVRRAHRAWALREAPPPLDAPQR-----RVAVDLMSKLRDATLGVCEAIAHWRSASAALAAEVAREESGFAPESYETGGLEHAFLWHGRNYALKMAVSDMDFVGAIEPLAEALGVPS-AKMRRNPLMLPRTLDEARADG 3191          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A024TBH3_9STRA (MT domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBH3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.190e-12
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQ 489
            SDP  E+ ++K IL RE L++RL+    +LR               D ++   G     V+ LL   R A++AVIEAI  W + +   +P  ++W+G +Y+ ++ +DLNFL  V  +   L V  P    RNP M+P ++ ++
Sbjct:  180 SDPQDEIRIIKAILIREGLVTRLKGTTQKLR-------------IGDHSSLHHGPEGSSVLTLLLLTREASLAVIEAIVRWYQTLA--VPRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVA-PRSMVRNPFMMPTSIADR 306          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A485LP34_9STRA (Aste57867_23249 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP34_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.210e-12
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   61 SDPASELLVLKHILTRECLLSRLEAVCDQLR--KRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQRRDG 501
            +DP  E+ ++K IL RE LLSRL+    ++R      LH       T D            V+ LL   R +++AVI+A+  W + +   +P A++W+G +Y+ ++ +DLNFL  V  L + L V  P    RNP M+PQ++ ++  D 
Sbjct:  121 TDPQDEIRIMKAILIREGLLSRLKGTMKKIRIGDHTSLH-------TQDG---------NSVLTLLLHTRESSLAVIDALCRWYQTLA--VPRAYIWNGTSYIHRMLDDLNFLGEVPVLADALGVA-PRAMIRNPFMMPQSIADRDLDA 250          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A067BZM2_SAPPC (MT domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BZM2_SAPPC)

HSP 1 Score: 73.2 bits (178), Expect = 5.460e-12
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTL 480
            +DP  E+LV+K IL RE L+SRL+ V  +              ++    T+   ++++ ++ +L + R A+VAV++A+  W+  +    P  +++ G +YL ++ +DLNFLA +  L + L V  P    RNP MLP ++
Sbjct:  152 TDPKHEILVMKSILIREGLVSRLKGVAQR--------------ISIGDVTSLKVQNADSLLSILLQTRDASVAVVQALYDWQSQLPS--PQTYIFSGKSYLHRMLDDLNFLAEIPRLADVLGVA-PESMVRNPFMLPTSI 274          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: T0Q057_SAPDV (MT domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q057_SAPDV)

HSP 1 Score: 73.2 bits (178), Expect = 5.820e-12
Identity = 43/140 (30.71%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTL 480
            +DP  E+LV+K+IL RE L+SRL+ V ++              ++    T+   ++++ ++ +L + R A+VAV++A+  W+  +    P  +++ G +Y+ ++ +DLNFLA +  L + L V  P    RNP MLP ++
Sbjct:  153 TDPKHEILVMKNILIREGLVSRLKGVAER--------------ISIGDVTSLKVQNADSLLSILLQTRDASVAVVQALYEWQLQLPS--PQTYIFSGKSYVHRMLDDLNFLAEIPRLADVLGVA-PESMVRNPFMLPTSI 275          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: A0A418B1H0_9STRA (MT domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B1H0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-11
Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQ 489
            +DP  E+ ++K IL RE L++RL+    +LR               D ++   G     V+ LL   R A++AVIEAI  W + +   +P  ++W+G +Y+ ++ +DLNFL  V  +   L V  P    RNP M+P ++ ++
Sbjct:  104 TDPQDEIRIIKAILIREGLVTRLKGTTQKLR-------------IGDHSSLHHGPDGSSVLTLLLLTREASLAVIEAIVRWYQTLA--VPRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVA-PRSMVRNPFMMPTSIADR 230          
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Match: W4FD56_9STRA (MT domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD56_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.170e-10
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   61 SDPASELLVLKHILTRECLLSRLEAVCDQLRKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISVWRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFCRNPLMLPQTLDEQ 489
            SDP  E+ ++K IL RE L+S+L+    Q+R            +   S  +  G S   V+ LL + R +++AVIEA+  W + ++  +P  ++W+G +YL ++ +DLNFL  V  +   L V   +   RNP M+P ++ ++
Sbjct:  186 SDPQDEIRIMKAILIREGLVSKLKGTMHQIR------------LGDHSVLSCDGNS---VLTLLLQTRDSSLAVIEAMVRWFQSLS--VPRPYIWNGHSYLHRMLDDLNFLGDVHEMAEALGVASHS-MKRNPFMMPTSISDR 310          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7053.15857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LTD9_ECTSI4.640e-8185.63RNA-binding region-containing protein (RNP-1) n=1 ... [more]
A0A6H5KWP4_9PHAE2.590e-7985.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CMT4_9STRA1.300e-3750.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YG15_AURAN5.820e-3446.28Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A024TBH3_9STRA4.190e-1232.17MT domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A485LP34_9STRA4.210e-1232.89Aste57867_23249 protein n=1 Tax=Aphanomyces stella... [more]
A0A067BZM2_SAPPC5.460e-1231.43MT domain-containing protein n=1 Tax=Saprolegnia p... [more]
T0Q057_SAPDV5.820e-1230.71MT domain-containing protein n=1 Tax=Saprolegnia d... [more]
A0A418B1H0_9STRA1.020e-1131.47MT domain-containing protein n=1 Tax=Aphanomyces i... [more]
W4FD56_9STRA4.170e-1031.47MT domain-containing protein n=1 Tax=Aphanomyces a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7053contigL-elsbetiae_contig7053:6593..7311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue3.9e-71
Seed eggNOG ortholog2880.D8LTD9
KEGG koko:K12818,ko:K12837
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons2
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.9678814-CDS-L-elsbetiae_contig7053:6592..66641622816782.9678814-CDS-L-elsbetiae_contig7053:6592..6664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7053 6593..6664 -
1691683809.7790558-CDS-L-elsbetiae_contig7053:6592..66641691683809.7790558-CDS-L-elsbetiae_contig7053:6592..6664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7053 6593..6664 -
1622816782.978323-CDS-L-elsbetiae_contig7053:6882..73111622816782.978323-CDS-L-elsbetiae_contig7053:6882..7311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7053 6883..7311 -
1691683809.7953174-CDS-L-elsbetiae_contig7053:6882..73111691683809.7953174-CDS-L-elsbetiae_contig7053:6882..7311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7053 6883..7311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7053.15857.1prot_L-elsbetiae_contig7053.15857.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7053 6593..7311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7053.15857.1

>prot_L-elsbetiae_contig7053.15857.1 ID=prot_L-elsbetiae_contig7053.15857.1|Name=mRNA_L-elsbetiae_contig7053.15857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
PGATSFSSVASAFDFQHHIGSDPASELLVLKHILTRECLLSRLEAVCDQL
RKRFQLHPAAATTVTSDSATARLGESSEGVVDLLSKMRGATVAVIEAISV
WRKDMTGHLPSAFVWHGDNYLLKITNDLNFLAGVQPLVNTLKVMHPARFC
RNPLMLPQTLDEQRRDG
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mRNA from alignment at L-elsbetiae_contig7053:6593..7311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7053.15857.1 ID=mRNA_L-elsbetiae_contig7053.15857.1|Name=mRNA_L-elsbetiae_contig7053.15857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=719bp|location=Sequence derived from alignment at L-elsbetiae_contig7053:6593..7311- (Laminarionema elsbetiae ELsaHSoW15)
CCGGGCGCGACCAGTTTCAGCTCGGTAGCATCGGCGTTCGATTTTCAGCA CCATATTGGCAGTGATCCTGCTAGCGAGCTGCTTGTGCTGAAACACATCC TGACGAGAGAGTGCTTGCTATCTCGGCTGGAAGCCGTCTGCGATCAGCTC CGGAAACGATTTCAGCTCCATCCCGCCGCCGCCACGACGGTGACGTCTGA TAGCGCAACCGCTCGGCTGGGAGAGAGCAGTGAGGGTGTTGTGGATCTGC TGTCGAAAATGCGGGGCGCGACAGTCGCGGTGATAGAAGCTATTTCAGTG TGGAGGAAGGATATGACAGGTCATCTGCCGTCGGCTTTTGTTTGGCACGG AGATAACTATCTGCTCAAGATCACCAACGACCTGAACTTTCTGGCTGGAG TGCAGCCTTTGGTGAACACTCTGAAGGTGGTGCACGCCGTTCAATCACTC GGACTAGTTATAGTAGCGTAGTGTAGGACGGCATCTAAGTTATTTGCACT TTACATGCCCAAGCTCTTTTAGCACGAATGGTTATACCCCAGTCCACCGT TCTACGAAAGCACCATAACAATCCCTAACCCGCCCCTGAATGTGTGATGT ACACAAACGGATGCTTGCGTGCACGCGTCTGCGCACTTGCCATGTAGATG CATCCGGCGCGGTTTTGCAGAAACCCCTTAATGCTACCACAAACGCTTGA CGAACAACGACGAGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7053:6593..7311-

>mRNA_L-elsbetiae_contig7053.15857.1 ID=mRNA_L-elsbetiae_contig7053.15857.1|Name=mRNA_L-elsbetiae_contig7053.15857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig7053:6593..7311- (Laminarionema elsbetiae ELsaHSoW15)
CCGGGCGCGACCAGTTTCAGCTCGGTAGCATCGGCGTTCGATTTTCAGCA
CCATATTGGCAGTGATCCTGCTAGCGAGCTGCTTGTGCTGAAACACATCC
TGACGAGAGAGTGCTTGCTATCTCGGCTGGAAGCCGTCTGCGATCAGCTC
CGGAAACGATTTCAGCTCCATCCCGCCGCCGCCACGACGGTGACGTCTGA
TAGCGCAACCGCTCGGCTGGGAGAGAGCAGTGAGGGTGTTGTGGATCTGC
TGTCGAAAATGCGGGGCGCGACAGTCGCGGTGATAGAAGCTATTTCAGTG
TGGAGGAAGGATATGACAGGTCATCTGCCGTCGGCTTTTGTTTGGCACGG
AGATAACTATCTGCTCAAGATCACCAACGACCTGAACTTTCTGGCTGGAG
TGCAGCCTTTGGTGAACACTCTGAAGGTGCCGGGCGCGACCAGTTTCAGC
TCGGTAGCATCGGCGTTCGATTTTCAGCACCATATTGGCAGTGATCCTGC
TAGCGAGCTGCTTGTGCTGAAACACATCCTGACGAGAGAGTGCTTGCTAT
CTCGGCTGGAAGCCGTCTGCGATCAGCTCCGGAAACGATTTCAGCTCCAT
CCCGCCGCCGCCACGACGGTGACGTCTGATAGCGCAACCGCTCGGCTGGG
AGAGAGCAGTGAGGGTGTTGTGGATCTGCTGTCGAAAATGCGGGGCGCGA
CAGTCGCGGTGATAGAAGCTATTTCAGTGTGGAGGAAGGATATGACAGGT
CATCTGCCGTCGGCTTTTGTTTGGCACGGAGATAACTATCTGCTCAAGAT
CACCAACGACCTGAACTTTCTGGCTGGAGTGCAGCCTTTGGTGAACACTC
TGAAGGTGATGCATCCGGCGCGGTTTTGCAGAAACCCCTTAATGCTACCA
CAAACGCTTGACGAACAACGACGAGACGGGATGCATCCGGCGCGGTTTTG
CAGAAACCCCTTAATGCTACCACAAACGCTTGACGAACAACGACGAGACG
GG
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