mRNA_L-elsbetiae_contig7001.15803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7001.15803.1
Unique NamemRNA_L-elsbetiae_contig7001.15803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 1.310e-138
Identity = 205/265 (77.36%), Postives = 227/265 (85.66%), Query Frame = 1
Query:    1 LAGNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELAC 795
            L GNIW GDLETG+GEV EL APGPAVGLDHDRRS YLFV GG  GTARVYDE F LVADL +++ G+ SFVNDVIITKTAA+FTDSFQP+IYKVNLDR+TGALVDG AV  + LSDN+PV EG FNVNGI A DDG AL++V   S+QLFA+DP TG AT IDLGGELLPG G DGLVLR+NTLW+ DNALE+I EVSL+ DLSCG LAPR+L+NPLFDTQTTAMRKGNSLYAVNAKFGV  EDV +TA+EIVRVDRDSGEL C
Sbjct:   51 LNGNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSDYLFVAGGPVGTARVYDEDFALVADLALSD-GNSSFVNDVIITKTAAFFTDSFQPKIYKVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEATDDGSALVIVNMESQQLFAVDPDTGAATLIDLGGELLPGRG-DGLVLRKNTLWVVDNALEQILEVSLAADLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVRVDRDSGELVC 313          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.040e-121
Identity = 182/264 (68.94%), Postives = 212/264 (80.30%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELACE 798
            GNIW GDL+TGEGEVMEL+APGPA GL HDRRSGYLFV G  +GT RVYDE F LVADL   + G  S +NDV++TK AA++TDSFQP IYKVNLDR+TGALVDGS+ E + L DN P  E   N+NGI   DDG ALIVV S S+Q++A+DP TG AT IDLGG++L G  GDGLVLR+NTLW+ DN LE+I+EVSLS DLSCG +A R+L+NPLFD QTTAMRKGNSLYAVNAK  V  ED+ +TA+EIVRVDRD GELAC+
Sbjct:   73 GNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGDVGT-SIINDVVVTKGAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEAINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVL-GPRGDGLVLRKNTLWVSDNVLEQIYEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELACD 334          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A6H5L833_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L833_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 6.350e-81
Identity = 145/266 (54.51%), Postives = 174/266 (65.41%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEV--SLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELACE 798
            GN W  DL+TGEG VMEL+APGPA GL HDRRSGYLFV G  +GT RVYDE F LVADL   + G  S +NDV++TKTAA++TDS  P I KV                                       D+   LIVV S S+Q++A+DP TG AT +DLGG++L G  GDGLVLR++TL + DN LE+I+EV  SLS DLSCG +A R+L+NPLFD QTTAM KGNS+YAVNA   V  E + +TA+EIVRV RD GELACE
Sbjct:   35 GNNWKDDLKTGEGGVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLAFGDVGT-SMINDVVVTKTAAFYTDSIHPHINKVT--------------------------------------DNDSPLIVVNSESQQVYAVDPDTGDATVVDLGGDVL-GPRGDGLVLRKDTL-VSDNVLEKIYEVQVSLSADLSCGSVATRTLSNPLFDRQTTAMPKGNSMYAVNANLDVAEEVITTTAYEIVRVHRDGGELACE 259          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D7FN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN98_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 7.830e-71
Identity = 126/219 (57.53%), Postives = 146/219 (66.67%), Query Frame = 1
Query:  139 TARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELAC 795
            TARVYDE F +VADL +A+ G+ SFVNDVIITKTAA+FTDSFQP+IYKV+LD +TG LVD SAVE + LSDN+PV EG FNVNGI                                               VLR+NTLW+   +   I EVSLS DLSCG +A R+L++P+FDTQTTAMRKGNSLYAVNAKFGV  EDV + A+EIVRVDRDSGELAC
Sbjct:   52 TARVYDEDFTMVADLALADGGNSSFVNDVIITKTAAFFTDSFQPKIYKVDLDEETGELVDRSAVETLVLSDNVPVVEGAFNVNGIE----------------------------------------------VLRKNTLWVVHPSGGEILEVSLSADLSCGSVARRALSHPMFDTQTTAMRKGNSLYAVNAKFGVAEEDVDTAAYEIVRVDRDSGELAC 224          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.340e-61
Identity = 130/283 (45.94%), Postives = 175/283 (61.84%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVMELNAPGP-AVGLDHDRRSGYLFVCGGGTGTARVYD--ERFGLVADLPMAEEGDPSFVNDVIITKTA--AYFTDSFQPQIYKVNLDRDTGALVDG--SAVEIIRLSDNLPVTEGEF------NVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNAL-----ERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELACEA 801
            G+IW GDLETG G V+     G  A+G+D DRRS YL+VCG  +G+  +YD  + F LVA++ +   G  S VNDVII   +  AY T+S Q Q Y++ LD + G L +G  +  E+I LS +     GE       N NGIV  DD  +LI+V   S +LFA+DP TG AT IDLGG+L+   GGDGLVLR+NTLW+C N L     + + EV LS DLSCG +  R L+N  F+   TA+RKGNS++   + + V  E++ +T +++VRVDRDS    C A
Sbjct:   51 GSIWKGDLETGVGSVVIEGGNGTTALGIDFDRRSDYLWVCGAFSGSLAIYDTTDDFSLVAEIQLGTVG-ASLVNDVIIHPRSEYAYITESSQLQFYRIALD-EYGRLPNGPNTVAEVIPLSSDFSFQPGEIIADQALNSNGIVITDDLSSLIIVNYQSGELFAVDPDTGKATLIDLGGDLI--LGGDGLVLRKNTLWVCQNRLFGTPDQGVVEVLLSEDLSCGTIT-RRLSNEFFNDPATALRKGNSMWTTISMWAVSGEEIATTQYQLVRVDRDSAVSECAA 328          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A6A8G917_9EURY (Superoxide dismutase n=3 Tax=Haloferacaceae TaxID=1644056 RepID=A0A6A8G917_9EURY)

HSP 1 Score: 204 bits (518), Expect = 5.060e-61
Identity = 128/259 (49.42%), Postives = 162/259 (62.55%), Query Frame = 1
Query:    4 AGNIWMGDLETGEGEVMELNAPGP-AVGLDHDRRSGYLFVCGGGTGTARVYDERFG-LVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDR 774
            AG I+ GDL TG GEV      G  AVGL HD RS YLFV GG TG A VYD   G LVAD  +  +G P+FVNDV++T+TAAYFTDSF+P +Y+V L    G + D SAVE I LS +   + G FN NGI A  +G  LIVV S +  L+ +DP+TG ATEIDLGG  L  + GDG++L   TL++  N L  I  V L P+ + G +    + +P FD  TT    GNSLYAVNA+FG P  D  +  +++VRV +
Sbjct:   54 AGAIYRGDLRTGSGEVFVPPVEGGVAVGLSHDARSNYLFVAGGPTGQASVYDANTGALVADYGL--QGPPTFVNDVVVTRTAAYFTDSFRPALYRVPLGAG-GDVPDQSAVEEIPLSGDF-TSVGGFNANGIDAPPNGEYLIVVNSSTGLLYKVDPATGDATEIDLGGASL--TAGDGILLEGRTLYVVRNQLNLIAVVQLDPEATAGEVVDE-ITDPQFDVPTTVAGFGNSLYAVNARFGTP--DPANAEYDVVRVSK 303          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A643JWK0_9EURY (Superoxide dismutase n=2 Tax=Haloferax TaxID=2251 RepID=A0A643JWK0_9EURY)

HSP 1 Score: 202 bits (514), Expect = 3.020e-60
Identity = 125/258 (48.45%), Postives = 163/258 (63.18%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFG-LVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTA-FEIVRVDR 774
            G I+ GDL TG G+V      GPAVGL HD RS YLFV GG TG A VYD   G LVAD  +    D  FVNDV++T+TAAYFTDS +P +Y++ L    G + + SAVE I LS +     G FN NGI A  +G+ LIVV + +  L+ +DP++G ATEIDLGGE +  + GDG++L   TL++  N L +I  V+L PD + G +    + NPLFD  TT    GNSLYAVNA+FG P    P+ A +++VRV +
Sbjct:   72 GAIYRGDLRTGSGDVFVPPTGGPAVGLSHDARSNYLFVAGGPTGRASVYDADTGALVADYELQ---DSQFVNDVVVTRTAAYFTDSARPSLYRIPLGAG-GDVPNQSAVEEIPLSGDFTSVAG-FNANGIDAPPNGKYLIVVNTSTGLLYKVDPASGDATEIDLGGETV--TAGDGILLAGRTLYVVRNQLNQIAVVTLDPDATAGEVVD-VITNPLFDVPTTVTGFGNSLYAVNARFGTP----PANAEYDVVRVSK 317          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A3N5S5I5_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S5I5_9CHLR)

HSP 1 Score: 193 bits (490), Expect = 1.140e-56
Identity = 117/258 (45.35%), Postives = 157/258 (60.85%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVMELNAPG-PAVGLDHDRRSGYLFVCGGGTGTARVYDERFGL-VADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDR 774
            G ++ GD+ +GEGEV+     G  A+GL +D RSG LFV GG TG A VYD + G  VA++ ++    PSF+NDV+ITK AAYFT+SFQP  Y+V+L R  G L      E + L  +       FN NGI A  +G+ALI+V S    L+ +DP+TG A  IDLGG  +P   GDGL+L+  TL++  N L +I  + L  D + G +   ++ + LF   TT  R GNSLYAVNA+FG P    P T +E+VRV R
Sbjct:   65 GAVYRGDVRSGEGEVLVPAQEGRSAIGLKYDSRSGLLFVSGGNTGFAYVYDGKTGANVAEIQLSTT--PSFINDVVITKDAAYFTNSFQPVFYRVSLARH-GGLPPAPTSEEVPLGGDFQFIPDAFNSNGIAATPNGKALIIVNSSEGALYKVDPATGDAKRIDLGGGSVPN--GDGLLLQGKTLYVVQNQLNQIAVIRLKSDFTSGSIV-NTITSELFRVPTTIARFGNSLYAVNARFGTP--PTPDTEYEVVRVPR 314          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A3N5UU31_9CHLR (Superoxide dismutase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UU31_9CHLR)

HSP 1 Score: 190 bits (483), Expect = 9.630e-56
Identity = 114/242 (47.11%), Postives = 149/242 (61.57%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVM-ELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGL-VADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVP 726
            G ++ GDL +GEGEV+    A   A+GL +D RSG LFV GG TG A  YD + G  VA++ ++    PSF+NDV+ITK AAYFT+SFQP +++V L +  G L      E I L  +   T G FN NGI A  +G+ LI+V S    L+ +DP TG AT IDLGG  +P   GDGL+L+  TL++  N L RI  + L  D S G +   ++ +PLF   TT  R GNSLYAVNA+FG P
Sbjct:   65 GAVFRGDLRSGEGEVLVPAQAGRSAIGLKYDERSGLLFVSGGNTGYAYFYDGKTGANVAEIQLSTL--PSFINDVVITKEAAYFTNSFQPVLHRVPLAKK-GGLPPAPTSEEIPLGGDYQFTPGAFNANGIAATPNGKTLIIVNSTEGALYKVDPGTGNATRIDLGGGSVPN--GDGLLLQGKTLYVVQNQLNRIAVIRLKSDFSAGTIV-NTITSPLFRVPTTIARFGNSLYAVNARFGTP 300          
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A6H5JM39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM39_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 9.220e-55
Identity = 104/175 (59.43%), Postives = 113/175 (64.57%), Query Frame = 1
Query:    7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYK------------------------------------------VNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVD 405
            GNIW GDLETG+GEV EL APGPAVGLDHDRRSGYLFV GG  GTARVYDE F LVADL +++ G+ SFVNDVIITKTAAYFTDSFQP+IYK                                          VNLDR+TGALVDG AV  + LSDN+PV EG FNVNGI   D
Sbjct:    7 GNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSGYLFVAGGPVGTARVYDEDFALVADLVLSD-GNSSFVNDVIITKTAAYFTDSFQPKIYKARQLRPSLNEFRPREWGHSMSSRQHPVLQFEQVSTVSIEEKNVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEVSD 180          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY1_ECTSI1.310e-13877.36Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
D7FZ69_ECTSI1.040e-12168.94Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L833_9PHAE6.350e-8154.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN98_ECTSI7.830e-7157.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G508_ECTSI1.340e-6145.94Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6A8G917_9EURY5.060e-6149.42Superoxide dismutase n=3 Tax=Haloferacaceae TaxID=... [more]
A0A643JWK0_9EURY3.020e-6048.45Superoxide dismutase n=2 Tax=Haloferax TaxID=2251 ... [more]
A0A3N5S5I5_9CHLR1.140e-5645.35Superoxide dismutase n=1 Tax=Chloroflexi bacterium... [more]
A0A3N5UU31_9CHLR9.630e-5647.11Superoxide dismutase (Fragment) n=1 Tax=Chloroflex... [more]
A0A6H5JM39_9PHAE9.220e-5559.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7001contigL-elsbetiae_contig7001:4888..8075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.0
Seed ortholog evalue5.3e-107
Seed eggNOG ortholog2880.D8LPY1
Hectar predicted targeting categoryother localisation
EggNOG OGs2D5U8@1,2SZPX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size807
Cds size789
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.8404424-UTR-L-elsbetiae_contig7001:4887..49051622816777.8404424-UTR-L-elsbetiae_contig7001:4887..4905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7001 4888..4905 +
1691683805.6589882-UTR-L-elsbetiae_contig7001:4887..49051691683805.6589882-UTR-L-elsbetiae_contig7001:4887..4905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7001 4888..4905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.8518448-CDS-L-elsbetiae_contig7001:4905..50231622816777.8518448-CDS-L-elsbetiae_contig7001:4905..5023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 4906..5023 +
1691683805.674982-CDS-L-elsbetiae_contig7001:4905..50231691683805.674982-CDS-L-elsbetiae_contig7001:4905..5023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 4906..5023 +
1622816777.862251-CDS-L-elsbetiae_contig7001:5606..57521622816777.862251-CDS-L-elsbetiae_contig7001:5606..5752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 5607..5752 +
1691683805.6853538-CDS-L-elsbetiae_contig7001:5606..57521691683805.6853538-CDS-L-elsbetiae_contig7001:5606..5752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 5607..5752 +
1622816777.8725052-CDS-L-elsbetiae_contig7001:6268..63821622816777.8725052-CDS-L-elsbetiae_contig7001:6268..6382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 6269..6382 +
1691683805.698721-CDS-L-elsbetiae_contig7001:6268..63821691683805.698721-CDS-L-elsbetiae_contig7001:6268..6382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 6269..6382 +
1622816777.882769-CDS-L-elsbetiae_contig7001:6966..71041622816777.882769-CDS-L-elsbetiae_contig7001:6966..7104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 6967..7104 +
1691683805.7142015-CDS-L-elsbetiae_contig7001:6966..71041691683805.7142015-CDS-L-elsbetiae_contig7001:6966..7104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 6967..7104 +
1622816777.892855-CDS-L-elsbetiae_contig7001:7482..75391622816777.892855-CDS-L-elsbetiae_contig7001:7482..7539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 7483..7539 +
1691683805.7250874-CDS-L-elsbetiae_contig7001:7482..75391691683805.7250874-CDS-L-elsbetiae_contig7001:7482..7539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 7483..7539 +
1622816777.9029286-CDS-L-elsbetiae_contig7001:7859..80751622816777.9029286-CDS-L-elsbetiae_contig7001:7859..8075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 7860..8075 +
1691683805.7344377-CDS-L-elsbetiae_contig7001:7859..80751691683805.7344377-CDS-L-elsbetiae_contig7001:7859..8075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7001 7860..8075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7001.15803.1prot_L-elsbetiae_contig7001.15803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7001 4906..8075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7001.15803.1

>prot_L-elsbetiae_contig7001.15803.1 ID=prot_L-elsbetiae_contig7001.15803.1|Name=mRNA_L-elsbetiae_contig7001.15803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
MGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFG
LVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVD
GSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPS
TGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSC
GHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRV
DRDSGELACEAV*
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mRNA from alignment at L-elsbetiae_contig7001:4888..8075+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7001.15803.1 ID=mRNA_L-elsbetiae_contig7001.15803.1|Name=mRNA_L-elsbetiae_contig7001.15803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3188bp|location=Sequence derived from alignment at L-elsbetiae_contig7001:4888..8075+ (Laminarionema elsbetiae ELsaHSoW15)
CTAGCGGGAAACATCTGGATGGGCGACCTTGAGACCGGCGAGGGCGAGGT GATGGAGCTTAACGCTCCCGGCCCGGCCGTAGGCCTCGATCACGACCGCC GATCCGGATACCTCTTCGTCTGTGGGGGTGGCACCGGTGCGCCACCGAAT GCCGTGTTTTACTTGTCTTCTTCTAGATAGATCCTTGAAACAGATTTTAC ATGCAACCATCTAGTGGGAGCGGTCTTATGTACGTCCCACCTGTGCAAAA CGTGTCAGGAGTTTCGACTCCGGAGTATATATGGATGTTTCGAGATTGAA GACGGCCAGTGGGCAGCTTTTCTAACTATACGGGCTTTGTCCATCAGGTC AGCCTGCTGCTGTTTTTTTGTGAACATTTCACATTTGCATACTTATTTTT GACGCATGTACGTACGTACGCAAGAAGCACGGGGAGTAAAACCGCAGTAC TTCTTGGCTGTTTCGATTTCATCATTTTGGGCTCTAACGACATGTATCAG AAGGGCAAGAACGAAGGAAAAACAACGAATCATGATCGCCTGGCAGTACT TTCCTTGGTTCAAGGCAGCTAGCTTCGATTTTAAACTTGGAAAAAGTGCT CGCATTTCCCGTTTCCCACAGGTAGAAGCGCACGCATGTGTCCCTCGCTT GGACCAAAATAGTATATTTATCCAACAATTATTCACTCGCGGAATGACCA AACTCTGAATATACATCAGGCACGGCCCGCGTGTACGATGAACGTTTCGG CTTGGTCGCTGATCTGCCGATGGCTGAGGAGGGCGATCCATCATTTGTGA ACGACGTCATCATCACCAAGACCGCCGCGTACTTTACAGACTCTTTCCAG CCACAGATATACAAGGTGTGATGTAACTATGAAGTGGGCTCGCTCCTACA TAGAGCAGGCCTGTAATATCTCTATGATCTCCTGCTGCTTGCTTGTTTTG TAAAATACATTTTCAGGGTGAACCAACCGCCAATCATTGTAAAGCACGAG TGAGTGTGCGGCGCGATAGCTCCTGGGTGCTCATGCTCACCAGCGAAACA AGGCTATACGAAGAACCTGACGAGATCAAATTTACCAATCTTTTAATCGT CAACTGCTGTCACCGGATGTTATATTTTATTTGCGCCACGTTCTCACGCG ACGCTTTATGAATGGACTCTTTCTGTTTCTTGTCAAATATTTTGTGTGAT GGGTCTGAATCACATTTGTGGTATTTTTGCTACGGTTGACGAAGGATCCT GCTTCCTGCTAGTGGCACTGGAAACCAGTAAATATTATTTGCACCAACGG AACCAACCTTGGAACCCGTAAATGGCACGAATCTATGTGAAGAAGGTGAG CTAACAGCAGCACATGTGTTTGTTGATTCAGGTAAACCTCGACAGGGACA CTGGTGCCCTGGTGGATGGGTCGGCCGTTGAAATCATCCGCCTCAGTGAC AACCTCCCCGTGACAGAAGGAGAATTCAACGTCAATGGCATCGTGGTGAG TATATGCTACGAGCGGTACGCCCACATGCGTTCCTAGACTTCCATGTGTG AGACAATTTTTTTTGCGATGCACGAAATATGCGATTCGCATTTCTTGTCC ACACGTTTCATTTCCCCGCGCCTGACCAGGTGGAGATATATTTCTTGAAC TGATGTATTTTGTGTTTTCTCGGTCATGTATCTAGCACAGTCAATAGGCC GTACCTCAAACACAATATTTCTCATGCGCTTAGGGGAAAATGTAGCACCG TGGCCGTTTTGGGTAAGGATTAGGGTTACGGTTCTCACCGCTCTCAGACT ACGCGCGGTTGAGTTGGAAGGGCATGAGTTGCTCTGCCAGCATCATACGC ACCTAATGCCATCATCCCCTTAAGGCCTCTTCGCATGTGTCTATCTGTCG GAAGCTGTGTTTGACTCCAGTGGAGGCTCTCACACGCATAGAGGGAAACG CCCAGTTCCGAACGGGCGTAATAAGTGCACAACCCAGACGCTCTGCAGTT TTTTTCCGGCAAGCGGCTCCGTGCGCAATACATCCGCCTTTTTGTATTAC AAGTCTCCTCGCTTGTCTTGACTGAACAGGCGGTAGACGACGGTCGCGCG CTGATCGTTGTCACCAGCTTTTCTCGGCAGCTTTTTGCCATCGACCCTAG CACCGGCGTTGCAACGGAGATCGACCTCGGAGGCGAGCTCCTGCCTGGAT CGGGCGGCGACGGGCTGGTAAGGGGATGGCTGTATGTATGTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTTTG TTGTTGGAGGTGTCTTGTTGGTGTTAGTTGGTGTTGGTCTTGTTGTGGTT GTTGTTGTTGATGTGGTGTTGCTGTTATGAACATGCCGCATGGAGTACGC ACCCGTGTGGTGCTGCTGTTATGAACATGGGCGCGTACTCCATGCGACAT GATATATCCTACATTCCGTGGTCGAGATCACGATTGGGCTCTGATGCATT TTTATATTTGTACTCGGTGGAGAGGCCTCCAGGAATTTGAAATCGTGCGC TACATATCCCCTTGCTCGCCGGTGCACCTGATGCTCGATTTTTAGGTGCT ACGCAGGAACACGCTCTGGATTTGCGACAACGCGCTGGAACGGATTTTCG AGGTCGGTGTTTTTGTTTGGAGTTCCAAACTGAACCCGCTCTGTATTTTT TTACCACACCGAACCTAAGGTCATGCTGTAATCACCTGTGCGCTCGCACA GGTGATAAAGTTTTATCAAACCACTGTTGAGACTTGTGCTTCCCTCCTTG CCTTCTGTCGTCGGTGGAACTCTTATCACGTGAAGTTGGATCCTCAGAAA AATCTCGACGGGGAAGGCCTCATACCTATGTGCTGGCTCCTTTATTACCC GGCTGATTAGTTTACCGCAACCGCCTCCCCTTGCTGCTGTTTTGTTTGTG TGGGCGCAACGCGTCGTAGCAGGTTTCTCTTTCGCCCGACCTCTCTTGCG GGCACTTGGCTCCCCGCTCCCTAGCAAACCCGTTGTTCGACACACAGACC ACCGCCATGCGGAAGGGAAACTCTCTGTACGCTGTCAATGCTAAGTTCGG CGTGCCTGTGGAGGACGTACCCTCAACGGCGTTCGAGATTGTCCGCGTCG ACCGAGACAGCGGAGAGCTGGCGTGCGAAGCCGTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7001:4888..8075+

>mRNA_L-elsbetiae_contig7001.15803.1 ID=mRNA_L-elsbetiae_contig7001.15803.1|Name=mRNA_L-elsbetiae_contig7001.15803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig7001:4888..8075+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGACCTTGAGACCGGCGAGGGCGAGGTGATGGAGCTTAACGCTCC
CGGCCCGGCCGTAGGCCTCGATCACGACCGCCGATCCGGATACCTCTTCG
TCTGTGGGGGTGGCACCGATGGGCGACCTTGAGACCGGCGAGGGCGAGGT
GATGGAGCTTAACGCTCCCGGCCCGGCCGTAGGCCTCGATCACGACCGCC
GATCCGGATACCTCTTCGTCTGTGGGGGTGGCACCGGCACGGCCCGCGTG
TACGATGAACGTTTCGGCTTGGTCGCTGATCTGCCGATGGCTGAGGAGGG
CGATCCATCATTTGTGAACGACGTCATCATCACCAAGACCGCCGCGTACT
TTACAGACTCTTTCCAGCCACAGATATACAAGGCACGGCCCGCGTGTACG
ATGAACGTTTCGGCTTGGTCGCTGATCTGCCGATGGCTGAGGAGGGCGAT
CCATCATTTGTGAACGACGTCATCATCACCAAGACCGCCGCGTACTTTAC
AGACTCTTTCCAGCCACAGATATACAAGGTAAACCTCGACAGGGACACTG
GTGCCCTGGTGGATGGGTCGGCCGTTGAAATCATCCGCCTCAGTGACAAC
CTCCCCGTGACAGAAGGAGAATTCAACGTCAATGGCATCGTGGTAAACCT
CGACAGGGACACTGGTGCCCTGGTGGATGGGTCGGCCGTTGAAATCATCC
GCCTCAGTGACAACCTCCCCGTGACAGAAGGAGAATTCAACGTCAATGGC
ATCGTGGCGGTAGACGACGGTCGCGCGCTGATCGTTGTCACCAGCTTTTC
TCGGCAGCTTTTTGCCATCGACCCTAGCACCGGCGTTGCAACGGAGATCG
ACCTCGGAGGCGAGCTCCTGCCTGGATCGGGCGGCGACGGGCTGGCGGTA
GACGACGGTCGCGCGCTGATCGTTGTCACCAGCTTTTCTCGGCAGCTTTT
TGCCATCGACCCTAGCACCGGCGTTGCAACGGAGATCGACCTCGGAGGCG
AGCTCCTGCCTGGATCGGGCGGCGACGGGCTGGTGCTACGCAGGAACACG
CTCTGGATTTGCGACAACGCGCTGGAACGGATTTTCGAGGTGCTACGCAG
GAACACGCTCTGGATTTGCGACAACGCGCTGGAACGGATTTTCGAGGTTT
CTCTTTCGCCCGACCTCTCTTGCGGGCACTTGGCTCCCCGCTCCCTAGCA
AACCCGTTGTTCGACACACAGACCACCGCCATGCGGAAGGGAAACTCTCT
GTACGCTGTCAATGCTAAGTTCGGCGTGCCTGTGGAGGACGTACCCTCAA
CGGCGTTCGAGATTGTCCGCGTCGACCGAGACAGCGGAGAGCTGGCGTGC
GAAGCCGTCTAGGTTTCTCTTTCGCCCGACCTCTCTTGCGGGCACTTGGC
TCCCCGCTCCCTAGCAAACCCGTTGTTCGACACACAGACCACCGCCATGC
GGAAGGGAAACTCTCTGTACGCTGTCAATGCTAAGTTCGGCGTGCCTGTG
GAGGACGTACCCTCAACGGCGTTCGAGATTGTCCGCGTCGACCGAGACAG
CGGAGAGCTGGCGTGCGAAGCCGTCTAG
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