mRNA_L-elsbetiae_contig7001.15803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI) HSP 1 Score: 401 bits (1031), Expect = 1.310e-138 Identity = 205/265 (77.36%), Postives = 227/265 (85.66%), Query Frame = 1 Query: 1 LAGNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELAC 795 L GNIW GDLETG+GEV EL APGPAVGLDHDRRS YLFV GG GTARVYDE F LVADL +++ G+ SFVNDVIITKTAA+FTDSFQP+IYKVNLDR+TGALVDG AV + LSDN+PV EG FNVNGI A DDG AL++V S+QLFA+DP TG AT IDLGGELLPG G DGLVLR+NTLW+ DNALE+I EVSL+ DLSCG LAPR+L+NPLFDTQTTAMRKGNSLYAVNAKFGV EDV +TA+EIVRVDRDSGEL C Sbjct: 51 LNGNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSDYLFVAGGPVGTARVYDEDFALVADLALSD-GNSSFVNDVIITKTAAFFTDSFQPKIYKVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEATDDGSALVIVNMESQQLFAVDPDTGAATLIDLGGELLPGRG-DGLVLRKNTLWVVDNALEQILEVSLAADLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVRVDRDSGELVC 313
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI) HSP 1 Score: 359 bits (922), Expect = 1.040e-121 Identity = 182/264 (68.94%), Postives = 212/264 (80.30%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELACE 798 GNIW GDL+TGEGEVMEL+APGPA GL HDRRSGYLFV G +GT RVYDE F LVADL + G S +NDV++TK AA++TDSFQP IYKVNLDR+TGALVDGS+ E + L DN P E N+NGI DDG ALIVV S S+Q++A+DP TG AT IDLGG++L G GDGLVLR+NTLW+ DN LE+I+EVSLS DLSCG +A R+L+NPLFD QTTAMRKGNSLYAVNAK V ED+ +TA+EIVRVDRD GELAC+ Sbjct: 73 GNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGDVGT-SIINDVVVTKGAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEAINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVL-GPRGDGLVLRKNTLWVSDNVLEQIYEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELACD 334
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A6H5L833_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L833_9PHAE) HSP 1 Score: 253 bits (646), Expect = 6.350e-81 Identity = 145/266 (54.51%), Postives = 174/266 (65.41%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEV--SLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELACE 798 GN W DL+TGEG VMEL+APGPA GL HDRRSGYLFV G +GT RVYDE F LVADL + G S +NDV++TKTAA++TDS P I KV D+ LIVV S S+Q++A+DP TG AT +DLGG++L G GDGLVLR++TL + DN LE+I+EV SLS DLSCG +A R+L+NPLFD QTTAM KGNS+YAVNA V E + +TA+EIVRV RD GELACE Sbjct: 35 GNNWKDDLKTGEGGVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLAFGDVGT-SMINDVVVTKTAAFYTDSIHPHINKVT--------------------------------------DNDSPLIVVNSESQQVYAVDPDTGDATVVDLGGDVL-GPRGDGLVLRKDTL-VSDNVLEKIYEVQVSLSADLSCGSVATRTLSNPLFDRQTTAMPKGNSMYAVNANLDVAEEVITTTAYEIVRVHRDGGELACE 259
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D7FN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN98_ECTSI) HSP 1 Score: 226 bits (576), Expect = 7.830e-71 Identity = 126/219 (57.53%), Postives = 146/219 (66.67%), Query Frame = 1 Query: 139 TARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELAC 795 TARVYDE F +VADL +A+ G+ SFVNDVIITKTAA+FTDSFQP+IYKV+LD +TG LVD SAVE + LSDN+PV EG FNVNGI VLR+NTLW+ + I EVSLS DLSCG +A R+L++P+FDTQTTAMRKGNSLYAVNAKFGV EDV + A+EIVRVDRDSGELAC Sbjct: 52 TARVYDEDFTMVADLALADGGNSSFVNDVIITKTAAFFTDSFQPKIYKVDLDEETGELVDRSAVETLVLSDNVPVVEGAFNVNGIE----------------------------------------------VLRKNTLWVVHPSGGEILEVSLSADLSCGSVARRALSHPMFDTQTTAMRKGNSLYAVNAKFGVAEEDVDTAAYEIVRVDRDSGELAC 224
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI) HSP 1 Score: 206 bits (524), Expect = 1.340e-61 Identity = 130/283 (45.94%), Postives = 175/283 (61.84%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVMELNAPGP-AVGLDHDRRSGYLFVCGGGTGTARVYD--ERFGLVADLPMAEEGDPSFVNDVIITKTA--AYFTDSFQPQIYKVNLDRDTGALVDG--SAVEIIRLSDNLPVTEGEF------NVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNAL-----ERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDRDSGELACEA 801 G+IW GDLETG G V+ G A+G+D DRRS YL+VCG +G+ +YD + F LVA++ + G S VNDVII + AY T+S Q Q Y++ LD + G L +G + E+I LS + GE N NGIV DD +LI+V S +LFA+DP TG AT IDLGG+L+ GGDGLVLR+NTLW+C N L + + EV LS DLSCG + R L+N F+ TA+RKGNS++ + + V E++ +T +++VRVDRDS C A Sbjct: 51 GSIWKGDLETGVGSVVIEGGNGTTALGIDFDRRSDYLWVCGAFSGSLAIYDTTDDFSLVAEIQLGTVG-ASLVNDVIIHPRSEYAYITESSQLQFYRIALD-EYGRLPNGPNTVAEVIPLSSDFSFQPGEIIADQALNSNGIVITDDLSSLIIVNYQSGELFAVDPDTGKATLIDLGGDLI--LGGDGLVLRKNTLWVCQNRLFGTPDQGVVEVLLSEDLSCGTIT-RRLSNEFFNDPATALRKGNSMWTTISMWAVSGEEIATTQYQLVRVDRDSAVSECAA 328
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A6A8G917_9EURY (Superoxide dismutase n=3 Tax=Haloferacaceae TaxID=1644056 RepID=A0A6A8G917_9EURY) HSP 1 Score: 204 bits (518), Expect = 5.060e-61 Identity = 128/259 (49.42%), Postives = 162/259 (62.55%), Query Frame = 1 Query: 4 AGNIWMGDLETGEGEVMELNAPGP-AVGLDHDRRSGYLFVCGGGTGTARVYDERFG-LVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDR 774 AG I+ GDL TG GEV G AVGL HD RS YLFV GG TG A VYD G LVAD + +G P+FVNDV++T+TAAYFTDSF+P +Y+V L G + D SAVE I LS + + G FN NGI A +G LIVV S + L+ +DP+TG ATEIDLGG L + GDG++L TL++ N L I V L P+ + G + + +P FD TT GNSLYAVNA+FG P D + +++VRV + Sbjct: 54 AGAIYRGDLRTGSGEVFVPPVEGGVAVGLSHDARSNYLFVAGGPTGQASVYDANTGALVADYGL--QGPPTFVNDVVVTRTAAYFTDSFRPALYRVPLGAG-GDVPDQSAVEEIPLSGDF-TSVGGFNANGIDAPPNGEYLIVVNSSTGLLYKVDPATGDATEIDLGGASL--TAGDGILLEGRTLYVVRNQLNLIAVVQLDPEATAGEVVDE-ITDPQFDVPTTVAGFGNSLYAVNARFGTP--DPANAEYDVVRVSK 303
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A643JWK0_9EURY (Superoxide dismutase n=2 Tax=Haloferax TaxID=2251 RepID=A0A643JWK0_9EURY) HSP 1 Score: 202 bits (514), Expect = 3.020e-60 Identity = 125/258 (48.45%), Postives = 163/258 (63.18%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFG-LVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTA-FEIVRVDR 774 G I+ GDL TG G+V GPAVGL HD RS YLFV GG TG A VYD G LVAD + D FVNDV++T+TAAYFTDS +P +Y++ L G + + SAVE I LS + G FN NGI A +G+ LIVV + + L+ +DP++G ATEIDLGGE + + GDG++L TL++ N L +I V+L PD + G + + NPLFD TT GNSLYAVNA+FG P P+ A +++VRV + Sbjct: 72 GAIYRGDLRTGSGDVFVPPTGGPAVGLSHDARSNYLFVAGGPTGRASVYDADTGALVADYELQ---DSQFVNDVVVTRTAAYFTDSARPSLYRIPLGAG-GDVPNQSAVEEIPLSGDFTSVAG-FNANGIDAPPNGKYLIVVNTSTGLLYKVDPASGDATEIDLGGETV--TAGDGILLAGRTLYVVRNQLNQIAVVTLDPDATAGEVVD-VITNPLFDVPTTVTGFGNSLYAVNARFGTP----PANAEYDVVRVSK 317
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A3N5S5I5_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S5I5_9CHLR) HSP 1 Score: 193 bits (490), Expect = 1.140e-56 Identity = 117/258 (45.35%), Postives = 157/258 (60.85%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVMELNAPG-PAVGLDHDRRSGYLFVCGGGTGTARVYDERFGL-VADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVPVEDVPSTAFEIVRVDR 774 G ++ GD+ +GEGEV+ G A+GL +D RSG LFV GG TG A VYD + G VA++ ++ PSF+NDV+ITK AAYFT+SFQP Y+V+L R G L E + L + FN NGI A +G+ALI+V S L+ +DP+TG A IDLGG +P GDGL+L+ TL++ N L +I + L D + G + ++ + LF TT R GNSLYAVNA+FG P P T +E+VRV R Sbjct: 65 GAVYRGDVRSGEGEVLVPAQEGRSAIGLKYDSRSGLLFVSGGNTGFAYVYDGKTGANVAEIQLSTT--PSFINDVVITKDAAYFTNSFQPVFYRVSLARH-GGLPPAPTSEEVPLGGDFQFIPDAFNSNGIAATPNGKALIIVNSSEGALYKVDPATGDAKRIDLGGGSVPN--GDGLLLQGKTLYVVQNQLNQIAVIRLKSDFTSGSIV-NTITSELFRVPTTIARFGNSLYAVNARFGTP--PTPDTEYEVVRVPR 314
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A3N5UU31_9CHLR (Superoxide dismutase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UU31_9CHLR) HSP 1 Score: 190 bits (483), Expect = 9.630e-56 Identity = 114/242 (47.11%), Postives = 149/242 (61.57%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVM-ELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGL-VADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYKVNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVDDGRALIVVTSFSRQLFAIDPSTGVATEIDLGGELLPGSGGDGLVLRRNTLWICDNALERIFEVSLSPDLSCGHLAPRSLANPLFDTQTTAMRKGNSLYAVNAKFGVP 726 G ++ GDL +GEGEV+ A A+GL +D RSG LFV GG TG A YD + G VA++ ++ PSF+NDV+ITK AAYFT+SFQP +++V L + G L E I L + T G FN NGI A +G+ LI+V S L+ +DP TG AT IDLGG +P GDGL+L+ TL++ N L RI + L D S G + ++ +PLF TT R GNSLYAVNA+FG P Sbjct: 65 GAVFRGDLRSGEGEVLVPAQAGRSAIGLKYDERSGLLFVSGGNTGYAYFYDGKTGANVAEIQLSTL--PSFINDVVITKEAAYFTNSFQPVLHRVPLAKK-GGLPPAPTSEEIPLGGDYQFTPGAFNANGIAATPNGKTLIIVNSTEGALYKVDPGTGNATRIDLGGGSVPN--GDGLLLQGKTLYVVQNQLNRIAVIRLKSDFSAGTIV-NTITSPLFRVPTTIARFGNSLYAVNARFGTP 300
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Match: A0A6H5JM39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM39_9PHAE) HSP 1 Score: 184 bits (467), Expect = 9.220e-55 Identity = 104/175 (59.43%), Postives = 113/175 (64.57%), Query Frame = 1 Query: 7 GNIWMGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGLVADLPMAEEGDPSFVNDVIITKTAAYFTDSFQPQIYK------------------------------------------VNLDRDTGALVDGSAVEIIRLSDNLPVTEGEFNVNGIVAVD 405 GNIW GDLETG+GEV EL APGPAVGLDHDRRSGYLFV GG GTARVYDE F LVADL +++ G+ SFVNDVIITKTAAYFTDSFQP+IYK VNLDR+TGALVDG AV + LSDN+PV EG FNVNGI D Sbjct: 7 GNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSGYLFVAGGPVGTARVYDEDFALVADLVLSD-GNSSFVNDVIITKTAAYFTDSFQPKIYKARQLRPSLNEFRPREWGHSMSSRQHPVLQFEQVSTVSIEEKNVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEVSD 180 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7001.15803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7001.15803.1 >prot_L-elsbetiae_contig7001.15803.1 ID=prot_L-elsbetiae_contig7001.15803.1|Name=mRNA_L-elsbetiae_contig7001.15803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp MGDLETGEGEVMELNAPGPAVGLDHDRRSGYLFVCGGGTGTARVYDERFGback to top mRNA from alignment at L-elsbetiae_contig7001:4888..8075+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7001.15803.1 ID=mRNA_L-elsbetiae_contig7001.15803.1|Name=mRNA_L-elsbetiae_contig7001.15803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3188bp|location=Sequence derived from alignment at L-elsbetiae_contig7001:4888..8075+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7001:4888..8075+ >mRNA_L-elsbetiae_contig7001.15803.1 ID=mRNA_L-elsbetiae_contig7001.15803.1|Name=mRNA_L-elsbetiae_contig7001.15803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig7001:4888..8075+ (Laminarionema elsbetiae ELsaHSoW15)back to top |