mRNA_L-elsbetiae_contig6947.15717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6947.15717.1
Unique NamemRNA_L-elsbetiae_contig6947.15717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6947.15717.1 vs. uniprot
Match: D7FWV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV9_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.160e-39
Identity = 107/214 (50.00%), Postives = 127/214 (59.35%), Query Frame = 1 
Query:  220 RNGPATVFDTPAAEAGEAQAAGDWDPAS----GVGVESATGSGYPETKDNGTDAAGNLFGNDLASKSEQALTQEGAPSAVI-----------IGASGGAFATHVSGEYPSATATATVSKRRNSMAFEIARMERAGKTLPPANPQKARRVWELSRPRYVEASD-HAPTTVEGGGGRGG----AKRRLRVLPGVESREAVPYGVWGTSWAQMGDFG 801
            + G        AA  G A+   +W+PAS    G GV+SA GSGYPETKDNG DAA NLFGND+    E   T    P+ VI           +G  GG      +     A+ T+T++KRRNSMAFEIAR+ERAGK +  ANP+KA+R WELSRPR+VE S  H P    GG G        K R R+ PG E+R AVPYGVW TSWAQMGDFG
Sbjct:   10 KGGATAAVAAAAAAEGSAE---NWEPASQAGIGGGVDSAGGSGYPETKDNGEDAAANLFGNDIPD--EDGGTGGDGPAIVIASIPPAAADGVVGRGGGLGTRGSAAGTAFASGTSTLTKRRNSMAFEIARVERAGKAVL-ANPEKAKRAWELSRPRFVEESSVHGPAM--GGSGXXXXXREGKTRARLPPGQENRNAVPYGVWSTSWAQMGDFG 215
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BLAST of mRNA_L-elsbetiae_contig6947.15717.1 vs. uniprot
Match: A0A6H5JJI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI5_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.730e-39
Identity = 101/189 (53.44%), Postives = 122/189 (64.55%), Query Frame = 1 
Query:  286 DWDPAS----GVGVESATGSGYPETKDNGTDAAGNLFGNDLASKS------EQALTQEGAPSAV---IIGASGGAFATHVSGEYPSATATATVSKRRNSMAFEIARMERAGKTLPPANPQKARRVWELSRPRYVEA-SDHAPTTVEGGG---GRGGAKRRLRVLPGVESREAVPYGVWGTSWAQMGDFG 801
            +W+PAS    G G++SA GSGYPETKDNG DAA NLFGND+  +         A+     P A    ++G  GG      +     A+ T+T++KRRNSMAFEIAR+ERAGK    AN +KA+R WELSRPR+VE  S H P     GG   GR G KRR R+ PG E+R+AVPYGVW TSWAQMGDFG
Sbjct:   30 NWEPASQARIGGGIDSAGGSGYPETKDNGEDAAANLFGNDIPVEDGGTGGXXXAVVIASIPPAAADGVVGRGGGLGTRGSAAGTGFASGTSTLTKRRNSMAFEIARVERAGKAAL-ANLEKAKRAWELSRPRFVEERSVHGPAMGGSGGAXXGRAG-KRRARLPPGQENRDAVPYGVWSTSWAQMGDFG 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6947.15717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV9_ECTSI1.160e-3950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJI5_9PHAE1.730e-3953.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6947contigL-elsbetiae_contig6947:9066..9866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue5.6e-37
Seed eggNOG ortholog2880.D7FWV9
Hectar predicted targeting categoryother localisation
EggNOG OGs28PFW@1,2QW3U@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004590.1
Exons1
Model size801
Cds size585
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.2384667-UTR-L-elsbetiae_contig6947:9065..92811622816770.2384667-UTR-L-elsbetiae_contig6947:9065..9281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6947 9066..9281 +
1691683800.1837165-UTR-L-elsbetiae_contig6947:9065..92811691683800.1837165-UTR-L-elsbetiae_contig6947:9065..9281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6947 9066..9281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.2510555-CDS-L-elsbetiae_contig6947:9281..98661622816770.2510555-CDS-L-elsbetiae_contig6947:9281..9866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6947 9282..9866 +
1691683800.1963532-CDS-L-elsbetiae_contig6947:9281..98661691683800.1963532-CDS-L-elsbetiae_contig6947:9281..9866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6947 9282..9866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6947.15717.1prot_L-elsbetiae_contig6947.15717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6947 9282..9866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6947.15717.1

>prot_L-elsbetiae_contig6947.15717.1 ID=prot_L-elsbetiae_contig6947.15717.1|Name=mRNA_L-elsbetiae_contig6947.15717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MRNGPATVFDTPAAEAGEAQAAGDWDPASGVGVESATGSGYPETKDNGTD
AAGNLFGNDLASKSEQALTQEGAPSAVIIGASGGAFATHVSGEYPSATAT
ATVSKRRNSMAFEIARMERAGKTLPPANPQKARRVWELSRPRYVEASDHA
PTTVEGGGGRGGAKRRLRVLPGVESREAVPYGVWGTSWAQMGDFG
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mRNA from alignment at L-elsbetiae_contig6947:9066..9866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6947.15717.1 ID=mRNA_L-elsbetiae_contig6947.15717.1|Name=mRNA_L-elsbetiae_contig6947.15717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=801bp|location=Sequence derived from alignment at L-elsbetiae_contig6947:9066..9866+ (Laminarionema elsbetiae ELsaHSoW15)
TAGTCTCGGGGTACGGGAGGCGGGCGGATGAGGAGGGCGAGTCAACCAGC
CCGCAACATTTGGGCGCAACGTTGACGTTGGAGCGGAGGACTAAATAGTG
TGGGCACCAGTTGGGAAACGAGCCTGCTATATCTGCAGTGGAGAAATCTC
GTTGCAGGGCCGGTTCATGCTTCCCACCTTGGCCGACATTTCTTCTCAGA
AAAAAAAGAACGACCGATGAGGAACGGCCCCGCCACCGTGTTCGACACGC
CGGCAGCGGAGGCAGGAGAGGCGCAAGCAGCAGGGGACTGGGATCCCGCT
TCGGGGGTGGGCGTCGAGTCTGCGACGGGGTCAGGCTACCCCGAGACGAA
GGACAATGGCACGGATGCCGCTGGCAATCTGTTCGGGAACGACCTCGCCT
CGAAGAGCGAGCAGGCGCTAACGCAGGAGGGCGCACCGTCGGCAGTCATA
ATAGGCGCCAGCGGAGGAGCCTTCGCCACCCACGTCAGTGGCGAGTACCC
TTCGGCCACGGCCACGGCCACGGTGTCCAAGCGCAGAAACTCGATGGCCT
TCGAGATCGCGCGGATGGAGAGGGCGGGGAAAACGCTGCCCCCGGCGAAC
CCTCAGAAGGCGAGGCGCGTCTGGGAGCTGTCGCGGCCGCGGTACGTGGA
GGCCTCGGACCACGCGCCCACCACGGTCGAGGGAGGGGGGGGGCGGGGCG
GGGCGAAGAGGAGGTTGCGCGTTCTCCCCGGGGTCGAGAGCCGGGAGGCC
GTCCCGTACGGGGTCTGGGGCACGAGCTGGGCGCAGATGGGCGATTTCGG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6947:9066..9866+

>mRNA_L-elsbetiae_contig6947.15717.1 ID=mRNA_L-elsbetiae_contig6947.15717.1|Name=mRNA_L-elsbetiae_contig6947.15717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig6947:9066..9866+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAACGGCCCCGCCACCGTGTTCGACACGCCGGCAGCGGAGGCAGG
AGAGGCGCAAGCAGCAGGGGACTGGGATCCCGCTTCGGGGGTGGGCGTCG
AGTCTGCGACGGGGTCAGGCTACCCCGAGACGAAGGACAATGGCACGGAT
GCCGCTGGCAATCTGTTCGGGAACGACCTCGCCTCGAAGAGCGAGCAGGC
GCTAACGCAGGAGGGCGCACCGTCGGCAGTCATAATAGGCGCCAGCGGAG
GAGCCTTCGCCACCCACGTCAGTGGCGAGTACCCTTCGGCCACGGCCACG
GCCACGGTGTCCAAGCGCAGAAACTCGATGGCCTTCGAGATCGCGCGGAT
GGAGAGGGCGGGGAAAACGCTGCCCCCGGCGAACCCTCAGAAGGCGAGGC
GCGTCTGGGAGCTGTCGCGGCCGCGGTACGTGGAGGCCTCGGACCACGCG
CCCACCACGGTCGAGGGAGGGGGGGGGCGGGGCGGGGCGAAGAGGAGGTT
GCGCGTTCTCCCCGGGGTCGAGAGCCGGGAGGCCGTCCCGTACGGGGTCT
GGGGCACGAGCTGGGCGCAGATGGGCGATTTCGGGATGAGGAACGGCCCC
GCCACCGTGTTCGACACGCCGGCAGCGGAGGCAGGAGAGGCGCAAGCAGC
AGGGGACTGGGATCCCGCTTCGGGGGTGGGCGTCGAGTCTGCGACGGGGT
CAGGCTACCCCGAGACGAAGGACAATGGCACGGATGCCGCTGGCAATCTG
TTCGGGAACGACCTCGCCTCGAAGAGCGAGCAGGCGCTAACGCAGGAGGG
CGCACCGTCGGCAGTCATAATAGGCGCCAGCGGAGGAGCCTTCGCCACCC
ACGTCAGTGGCGAGTACCCTTCGGCCACGGCCACGGCCACGGTGTCCAAG
CGCAGAAACTCGATGGCCTTCGAGATCGCGCGGATGGAGAGGGCGGGGAA
AACGCTGCCCCCGGCGAACCCTCAGAAGGCGAGGCGCGTCTGGGAGCTGT
CGCGGCCGCGGTACGTGGAGGCCTCGGACCACGCGCCCACCACGGTCGAG
GGAGGGGGGGGGCGGGGCGGGGCGAAGAGGAGGTTGCGCGTTCTCCCCGG
GGTCGAGAGCCGGGAGGCCGTCCCGTACGGGGTCTGGGGCACGAGCTGGG
CGCAGATGGGCGATTTCGGG
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