|
Homology
BLAST of mRNA_L-elsbetiae_contig1010.155.1 vs. uniprot
Match: D7FP78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP78_ECTSI) HSP 1 Score: 314 bits (804), Expect = 2.930e-101 Identity = 193/301 (64.12%), Postives = 224/301 (74.42%), Query Frame = 1
Query: 520 MSARKAAPGGSVPSGVASSSAQTELKAAMRAYLLRRVSLDDALSESITQRIFDWDTDMRRMMDTIKIVAAGEGKRTFESVPKVMRRQVDARRRSEEARNLHGSWFPSVMRRMLIMVQGREGSEMPRCMTKLAAALHKVLVSGHTVTPYIFWPLVDASFLPQDHERASSRKMILTCLSFVHQSPENYYRFLIDSGIKVPTSLKHAFQRAHQKRAQRNKLGSKKSQLGGGSVNRLTGVVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLSDGXGSDDMSDNMSVFSVSTQLEG 1422
MSAR+A PG V + S+SA+ ELKAA++AY+LR+VSLD LSESI++R FDWD DMRRMMDT+KI AAGEGKRTFESVPKVMRRQV A++R++EA +L GSWFPSVMRRMLIMVQG+EG E+PRCMTKLAAALHKVL SGH VTPYIFW LV ASFLP+DH+ ++KMILTCL+FVHQ ENY+ FL++ IKVP+SLK A QRA+QKRA + + SKKS LG XXXXXXXXXXXX N+SD GSDDMSD MSVFSVSTQL G
Sbjct: 1 MSARRAGPGSPV---MVSASAKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRMMDTVKIAAAGEGKRTFESVPKVMRRQVAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKQAVQRANQKRAHKKGV-SKKSHLGXXXXXXXX-----XXXXXXXXXXXXALEGGHGHGSSAVSIKYIGGAGVGNVSDA-GSDDMSDTMSVFSVSTQLGG 291
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 6 |
Model size | 1428 |
Cds size | 1428 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815242.126399-CDS-L-elsbetiae_contig1010:16743..17241 | 1622815242.126399-CDS-L-elsbetiae_contig1010:16743..17241 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 16744..17241 - |
1691682791.0444477-CDS-L-elsbetiae_contig1010:16743..17241 | 1691682791.0444477-CDS-L-elsbetiae_contig1010:16743..17241 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 16744..17241 - |
1622815242.1425884-CDS-L-elsbetiae_contig1010:17660..17810 | 1622815242.1425884-CDS-L-elsbetiae_contig1010:17660..17810 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 17661..17810 - |
1691682791.0584745-CDS-L-elsbetiae_contig1010:17660..17810 | 1691682791.0584745-CDS-L-elsbetiae_contig1010:17660..17810 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 17661..17810 - |
1622815242.152918-CDS-L-elsbetiae_contig1010:18600..18663 | 1622815242.152918-CDS-L-elsbetiae_contig1010:18600..18663 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 18601..18663 - |
1691682791.0661762-CDS-L-elsbetiae_contig1010:18600..18663 | 1691682791.0661762-CDS-L-elsbetiae_contig1010:18600..18663 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 18601..18663 - |
1622815242.1631901-CDS-L-elsbetiae_contig1010:19233..19371 | 1622815242.1631901-CDS-L-elsbetiae_contig1010:19233..19371 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 19234..19371 - |
1691682791.0742033-CDS-L-elsbetiae_contig1010:19233..19371 | 1691682791.0742033-CDS-L-elsbetiae_contig1010:19233..19371 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 19234..19371 - |
1622815242.178768-CDS-L-elsbetiae_contig1010:19679..19815 | 1622815242.178768-CDS-L-elsbetiae_contig1010:19679..19815 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 19680..19815 - |
1691682791.0819602-CDS-L-elsbetiae_contig1010:19679..19815 | 1691682791.0819602-CDS-L-elsbetiae_contig1010:19679..19815 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 19680..19815 - |
1622815242.1900175-CDS-L-elsbetiae_contig1010:20109..20552 | 1622815242.1900175-CDS-L-elsbetiae_contig1010:20109..20552 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 20110..20552 - |
1691682791.0892544-CDS-L-elsbetiae_contig1010:20109..20552 | 1691682791.0892544-CDS-L-elsbetiae_contig1010:20109..20552 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1010 20110..20552 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1010.155.1 >prot_L-elsbetiae_contig1010.155.1 ID=prot_L-elsbetiae_contig1010.155.1|Name=mRNA_L-elsbetiae_contig1010.155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=476bp
MEEKLARAPRKPPGSGGGGRQARPARSSSGSTSGQRPVMASPAAAALHAT GSRDDGAPSTSATTTGAAVPRISGLPPGAAAVAVTDVRAGAKPQRPTSSQ DNGLGFSGEGFEQGGTSRTAATAAAAAGEGRTGASRHRSSSGGSHTARSS PATASRGRHSRPHGLQSAVVSGSMSARKAAPGGSVPSGVASSSAQTELKA AMRAYLLRRVSLDDALSESITQRIFDWDTDMRRMMDTIKIVAAGEGKRTF ESVPKVMRRQVDARRRSEEARNLHGSWFPSVMRRMLIMVQGREGSEMPRC MTKLAAALHKVLVSGHTVTPYIFWPLVDASFLPQDHERASSRKMILTCLS FVHQSPENYYRFLIDSGIKVPTSLKHAFQRAHQKRAQRNKLGSKKSQLGG GSVNRLTGVVEEGGGHYGGATDERRSSNMSMMAAGGFRYGGGGGASTANL SDGGGSDDMSDNMSVFSVSTQLEGY* back to topmRNA from alignment at L-elsbetiae_contig1010:16744..20552- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1010.155.1 ID=mRNA_L-elsbetiae_contig1010.155.1|Name=mRNA_L-elsbetiae_contig1010.155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3809bp|location=Sequence derived from alignment at L-elsbetiae_contig1010:16744..20552- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGGAAAAGCTAGCGCGAGCTCCCCGAAAGCCTCCCGGCAGCGGCGG
GGGCGGCCGACAGGCAAGGCCAGCCAGAAGCAGCAGCGGCAGCACCTCTG
GTCAGAGACCCGTCATGGCTTCACCGGCCGCGGCCGCGCTGCACGCGACC
GGCAGCAGGGACGACGGCGCACCGTCGACGTCGGCAACAACAACCGGAGC
AGCGGTGCCACGAATATCAGGACTACCACCTGGGGCGGCGGCGGTGGCGG
TGACTGACGTCCGCGCGGGGGCGAAGCCGCAGAGGCCAACAAGTAGCCAG
GATAACGGGTTAGGTTTCTCGGGGGAGGGGTTTGAGCAAGGGGGAACGTC
GCGGACAGCGGCGACGGCGGCAGCTGCAGCCGGGGAGGGAAGGACAGGAG
CGAGCCGACATCGCTCGTCGTCAGGAGGGTCGCATACAGCCAGGTGAGAT
GCGAGGAGCGCGCGGCAGGCTCGTCGCATCCCCCAAAACAGGCTCCTGTG
CTAGCTACGTACGTAGCTCCCTGGAGCGTTCACATGCCTCAAACCCGGTT
TTTTGGTTTCGGTTTCGGTTCTGCCATACCAAATCACGTCGTGAATTACG
CCCAAAATGCGAAGACTTGCTCTGAAGCCGAACGTAGTTTCCTTGGCCCT
TTCACGGTATGAACTACACCTGAAGCTTACGAGGAAACAAAAAAAATACT
CTATCCCCGCCCTTCGTCCTTTGGGTGTTGGCTCCAGATCTTCTCCGGCG
ACCGCCAGCAGGGGGCGTCATTCCCGACCTCACGGCCTTCAAAGCGCGGT
TGTTTCCGGGTCGATGAGCGCTAGGAAAGCGGCGCCTGGAGGGTCCGTGC
CTTCGGGTGTGGCATCATCATCGGTAAGAGATCTATCTGGCCTGCTACAA
TATATACATGGGCATCTCGTAGAGCTACGTGAACGTGTGTGAAGGTAACT
GGGAGAAGTTTGGCCGTTGGCTGTCTTTGTGTTAACGGAAGAGATGCTCG
CAGGGGTTACGTATGTCGTGATTTTGTGTAGAGGTACAAAGAGGAATGGG
GCACGATGTCACCGCGAAATACAACCGCAGCACACGTCAAGCCATCGCTT
CGCAAAAATAATGGGCATTGTTTTTTGTGCAAGGGTAATTTAACGATTCA
ACTCACAGCGTTGCCATACGCCCACTTTCAGGCGCAGACGGAGTTGAAGG
CGGCGATGAGGGCGTATCTCCTGCGGCGGGTCAGCCTGGATGACGCCTTG
TCAGAATCCATCACGCAAAGAATCTTTGACTGGGATACAGATATGCGGAG
AATGATGGATACCATCAAGGTACAAACCAGCGTCCGCCATCTCTGGCCTT
AACGCTTGACTACGACTCCGTTAGAACCCACGCTATCGTACATACTTCCA
AGTAAATTTCACCCGCACCAATTCTAGTGATTGCTTTTGCCTGTTTCCTG
TACAACGCTCTACAGGAAATACTGTCGGTTTGATCCCTGATTTTACAAAT
ACGTAGAATCATGTAGCTTAAAGTAAACGGGCTGTAGTCTAGAATTGGTT
TTTGTTCTTACAGCCACTCTCTTACTCCGGTTTCCGGTACGCATACATAT
CCATGGCATACATTTAGTGCCTATTCGATCGCGCCTTTTCGGGATTGATC
GTCGAGCTTTCGTCGCAGTGGGCTGACTGGGCGGGCCGAGTGGAACTACC
GTGCAGTCAAACCAACGCCACCAAAATGTCTGTATGGTTGTCCTTGTGGT
CCAAGGTAACTAGCTCGGTGGACAACGTGATTACCTCTAAAAATATTCTA
AGCTCCTATTGTGCACTTGGTAAACTTATGGCTAATCCCTGCAACACGGC
CGATTTCGTTGCTATTCAACGGAATAAATCCTGCGTCAGATTGTCGCAGC
CGGGGAAGGAAAGCGGACGTTCGAGAGCGTGCCGAAAGTCATGCGTCGGC
AGGTAATAACACCACTTTTTTCTAACATCTACGGAGTCCGTGGTCTAGCC
TTGCATGTTGACATTCCATGAGACCACTGCTGTGTGGTACAAGAATAACT
GTGGGGAACTTCGAAGAAGAATCACCGAGCATTTGGTGCCATCAACACTG
CAGAGTTGCAATTTAAGTGCTTCGATATTTGACGGCATGCTGTCATCTAG
GTCTGCCTGCACGAGAGGTGCGGAAGTACATGCATATCTGCTTATGCTTT
GAAGAGGAACTGCTGTATCGTCGAGCCTTTCCTCGAGCGCCGATGTGCTT
CGGTTCTCGCACGCCACTCAGTTTATCCTTTCTCCCGTGTTGCAACCACT
GGCGGTCCCGTTTATTCTCCTGAACTCTAACCCAAGCCGCGACGGGAGAA
AAATTACTTTTATCCATGCGCCTAGTTCATCTTCCTTCCGCCCACGACTA
TGCACAAGCACTTGACGATCGATCGTCGAACGAACCCACTCGAACAGAGA
CGGTACCATGCATCGGTTGATAAAAACTTCGGGGGAGGAGGGAAACAACC
CCGTACAGCGGTGTCTTTCCCCTTGAACATGTTTAGAATCAATGGCCAAT
GGTCCTGGTCTTTGTTGGGAGCTCGTGTTAGCATACTTCCATTGCGGTTA
TCGTTGTTGCCGTTGTTGTGGTTGTTGCTGTTGCTGCTTTTGTGTTGGTC
GTGGCTGCATTTAGCAGTGGCACACATAAGCCGGAACTCAACGGCAACAA
ACGCTTCGTTTTTGTTGCCGCCTGTCTGTCTGCCTGTTTCAGGTGGATGC
AAGAAGGCGCTCGGAAGAGGCGAGGAATCTGCACGGGTCGTGGTTCCCGT
CCGTCATGAGACGGATGCTCATCATGGTGCAGGGCAGGGAGGGCAGTGAA
ATGCCGAGATGCATGACCAAGCTCGCCGCAGCATTGCACAAGGTGTCCGG
GGGGGGGGTGTTATGCACCTCTCACACGATACGATAGAATGGGTTTCTGC
TGAGGATGATTGCTTTAAGGCGTGCTCGCTATCTGTGAGTGTTCCCAGGC
GTGAGCAAGGCTATACCTGCACGGGTACGAAACGGCGGAATCCGACCGTC
CTTTGCTGAAGAAGATTTCATGGGTCTGGAAAAGGAGGGGTGACGTGGAA
ATAAAACACTGCAATGCGGGCGGTTGTCTTGAAAGTACGTACCCGCAGTG
CTGTGCGGCGGTTCTATAACGTCAAACGTTGTGCTTTTCGGGGGAAATAC
CGCTCCCAAATAGGAGGTGGTAGCACACACTCCCCCGCGATCTTTCCGCG
CACCATGGGTCAACACCTGCTACTTGTCTGTCTATTCGCAACGACGAATA
TCGCGACGCAGGTGCTCGTGAGCGGACACACGGTGACGCCGTACATCTTC
TGGCCCCTGGTGGACGCCTCCTTTCTCCCGCAAGACCACGAGAGGGCCTC
CTCCCGGAAGATGATCCTCACCTGCTTATCCTTCGTGCACCAGAGCCCGG
AGAACTACTACCGGTTCCTGATCGACAGCGGCATAAAGGTGCCCACCTCA
CTCAAGCACGCCTTCCAGAGGGCGCACCAGAAGCGAGCCCAGCGGAACAA
GCTGGGCTCGAAGAAGTCGCAGCTCGGCGGCGGCAGCGTGAATCGGCTCA
CAGGGGTGGTGGAGGAGGGTGGCGGCCACTACGGGGGGGCGACGGACGAG
CGTCGCAGCTCAAACATGAGCATGATGGCGGCGGGGGGGTTCAGGTACGG
CGGCGGTGGTGGTGCGAGCACCGCAAACTTGAGCGATGGCGGCGGTAGCG
ATGACATGAGCGATAACATGTCGGTGTTCAGCGTCTCCACGCAGCTTGAA
GGCTACTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1010:16744..20552- >mRNA_L-elsbetiae_contig1010.155.1 ID=mRNA_L-elsbetiae_contig1010.155.1|Name=mRNA_L-elsbetiae_contig1010.155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2856bp|location=Sequence derived from alignment at L-elsbetiae_contig1010:16744..20552- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGGAAAAGCTAGCGCGAGCTCCCCGAAAGCCTCCCGGCAGCGGCGG GGGCGGCCGACAGGCAAGGCCAGCCAGAAGCAGCAGCGGCAGCACCTCTG GTCAGAGACCCGTCATGGCTTCACCGGCCGCGGCCGCGCTGCACGCGACC GGCAGCAGGGACGACGGCGCACCGTCGACGTCGGCAACAACAACCGGAGC AGCGGTGCCACGAATATCAGGACTACCACCTGGGGCGGCGGCGGTGGCGG TGACTGACGTCCGCGCGGGGGCGAAGCCGCAGAGGCCAACAAGTAGCCAG GATAACGGGTTAGGTTTCTCGGGGGAGGGGTTTGAGCAAGGGGGAACGTC GCGGACAGCGGCGACGGCGGCAGCTGCAGCCGGGGAGGGAAGGACAGGAG CGAGCCGACATCGCTCGTCGTCAGGAGGGTCGCATACAGCCAGATGGAGG AAAAGCTAGCGCGAGCTCCCCGAAAGCCTCCCGGCAGCGGCGGGGGCGGC CGACAGGCAAGGCCAGCCAGAAGCAGCAGCGGCAGCACCTCTGGTCAGAG ACCCGTCATGGCTTCACCGGCCGCGGCCGCGCTGCACGCGACCGGCAGCA GGGACGACGGCGCACCGTCGACGTCGGCAACAACAACCGGAGCAGCGGTG CCACGAATATCAGGACTACCACCTGGGGCGGCGGCGGTGGCGGTGACTGA CGTCCGCGCGGGGGCGAAGCCGCAGAGGCCAACAAGTAGCCAGGATAACG GGTTAGGTTTCTCGGGGGAGGGGTTTGAGCAAGGGGGAACGTCGCGGACA GCGGCGACGGCGGCAGCTGCAGCCGGGGAGGGAAGGACAGGAGCGAGCCG ACATCGCTCGTCGTCAGGAGGGTCGCATACAGCCAGATCTTCTCCGGCGA CCGCCAGCAGGGGGCGTCATTCCCGACCTCACGGCCTTCAAAGCGCGGTT GTTTCCGGGTCGATGAGCGCTAGGAAAGCGGCGCCTGGAGGGTCCGTGCC TTCGGGTGTGGCATCATCATCGATCTTCTCCGGCGACCGCCAGCAGGGGG CGTCATTCCCGACCTCACGGCCTTCAAAGCGCGGTTGTTTCCGGGTCGAT GAGCGCTAGGAAAGCGGCGCCTGGAGGGTCCGTGCCTTCGGGTGTGGCAT CATCATCGGCGCAGACGGAGTTGAAGGCGGCGATGAGGGCGTATCTCCTG CGGCGGGTCAGCCTGGATGACGCCTTGTCAGAATCCATCACGCAAAGAAT CTTTGACTGGGATACAGATATGCGGAGAATGATGGATACCATCAAGGCGC AGACGGAGTTGAAGGCGGCGATGAGGGCGTATCTCCTGCGGCGGGTCAGC CTGGATGACGCCTTGTCAGAATCCATCACGCAAAGAATCTTTGACTGGGA TACAGATATGCGGAGAATGATGGATACCATCAAGATTGTCGCAGCCGGGG AAGGAAAGCGGACGTTCGAGAGCGTGCCGAAAGTCATGCGTCGGCAGATT GTCGCAGCCGGGGAAGGAAAGCGGACGTTCGAGAGCGTGCCGAAAGTCAT GCGTCGGCAGGTGGATGCAAGAAGGCGCTCGGAAGAGGCGAGGAATCTGC ACGGGTCGTGGTTCCCGTCCGTCATGAGACGGATGCTCATCATGGTGCAG GGCAGGGAGGGCAGTGAAATGCCGAGATGCATGACCAAGCTCGCCGCAGC ATTGCACAAGGTGGATGCAAGAAGGCGCTCGGAAGAGGCGAGGAATCTGC ACGGGTCGTGGTTCCCGTCCGTCATGAGACGGATGCTCATCATGGTGCAG GGCAGGGAGGGCAGTGAAATGCCGAGATGCATGACCAAGCTCGCCGCAGC ATTGCACAAGGTGCTCGTGAGCGGACACACGGTGACGCCGTACATCTTCT GGCCCCTGGTGGACGCCTCCTTTCTCCCGCAAGACCACGAGAGGGCCTCC TCCCGGAAGATGATCCTCACCTGCTTATCCTTCGTGCACCAGAGCCCGGA GAACTACTACCGGTTCCTGATCGACAGCGGCATAAAGGTGCCCACCTCAC TCAAGCACGCCTTCCAGAGGGCGCACCAGAAGCGAGCCCAGCGGAACAAG CTGGGCTCGAAGAAGTCGCAGCTCGGCGGCGGCAGCGTGAATCGGCTCAC AGGGGTGGTGGAGGAGGGTGGCGGCCACTACGGGGGGGCGACGGACGAGC GTCGCAGCTCAAACATGAGCATGATGGCGGCGGGGGGGTTCAGGTACGGC GGCGGTGGTGGTGCGAGCACCGCAAACTTGAGCGATGGCGGCGGTAGCGA TGACATGAGCGATAACATGTCGGTGTTCAGCGTCTCCACGCAGCTTGAAG GCTACTAGGTGCTCGTGAGCGGACACACGGTGACGCCGTACATCTTCTGG CCCCTGGTGGACGCCTCCTTTCTCCCGCAAGACCACGAGAGGGCCTCCTC CCGGAAGATGATCCTCACCTGCTTATCCTTCGTGCACCAGAGCCCGGAGA ACTACTACCGGTTCCTGATCGACAGCGGCATAAAGGTGCCCACCTCACTC AAGCACGCCTTCCAGAGGGCGCACCAGAAGCGAGCCCAGCGGAACAAGCT GGGCTCGAAGAAGTCGCAGCTCGGCGGCGGCAGCGTGAATCGGCTCACAG GGGTGGTGGAGGAGGGTGGCGGCCACTACGGGGGGGCGACGGACGAGCGT CGCAGCTCAAACATGAGCATGATGGCGGCGGGGGGGTTCAGGTACGGCGG CGGTGGTGGTGCGAGCACCGCAAACTTGAGCGATGGCGGCGGTAGCGATG ACATGAGCGATAACATGTCGGTGTTCAGCGTCTCCACGCAGCTTGAAGGC TACTAG back to top
|