mRNA_L-elsbetiae_contig1010.155.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1010.155.1
Unique NamemRNA_L-elsbetiae_contig1010.155.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1010.155.1 vs. uniprot
Match: D7FP78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP78_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 2.930e-101
Identity = 193/301 (64.12%), Postives = 224/301 (74.42%), Query Frame = 1
Query:  520 MSARKAAPGGSVPSGVASSSAQTELKAAMRAYLLRRVSLDDALSESITQRIFDWDTDMRRMMDTIKIVAAGEGKRTFESVPKVMRRQVDARRRSEEARNLHGSWFPSVMRRMLIMVQGREGSEMPRCMTKLAAALHKVLVSGHTVTPYIFWPLVDASFLPQDHERASSRKMILTCLSFVHQSPENYYRFLIDSGIKVPTSLKHAFQRAHQKRAQRNKLGSKKSQLGGGSVNRLTGVVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLSDGXGSDDMSDNMSVFSVSTQLEG 1422
            MSAR+A PG  V   + S+SA+ ELKAA++AY+LR+VSLD  LSESI++R FDWD DMRRMMDT+KI AAGEGKRTFESVPKVMRRQV A++R++EA +L GSWFPSVMRRMLIMVQG+EG E+PRCMTKLAAALHKVL SGH VTPYIFW LV ASFLP+DH+   ++KMILTCL+FVHQ  ENY+ FL++  IKVP+SLK A QRA+QKRA +  + SKKS LG             XXXXXXXXXXXX                        N+SD  GSDDMSD MSVFSVSTQL G
Sbjct:    1 MSARRAGPGSPV---MVSASAKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRMMDTVKIAAAGEGKRTFESVPKVMRRQVAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKQAVQRANQKRAHKKGV-SKKSHLGXXXXXXXX-----XXXXXXXXXXXXALEGGHGHGSSAVSIKYIGGAGVGNVSDA-GSDDMSDTMSVFSVSTQLGG 291          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1010.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP78_ECTSI2.930e-10164.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1010contigL-elsbetiae_contig1010:16744..20552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1428
Cds size1428
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1010.155.1prot_L-elsbetiae_contig1010.155.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1010 16744..20552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.126399-CDS-L-elsbetiae_contig1010:16743..172411622815242.126399-CDS-L-elsbetiae_contig1010:16743..17241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 16744..17241 -
1691682791.0444477-CDS-L-elsbetiae_contig1010:16743..172411691682791.0444477-CDS-L-elsbetiae_contig1010:16743..17241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 16744..17241 -
1622815242.1425884-CDS-L-elsbetiae_contig1010:17660..178101622815242.1425884-CDS-L-elsbetiae_contig1010:17660..17810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 17661..17810 -
1691682791.0584745-CDS-L-elsbetiae_contig1010:17660..178101691682791.0584745-CDS-L-elsbetiae_contig1010:17660..17810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 17661..17810 -
1622815242.152918-CDS-L-elsbetiae_contig1010:18600..186631622815242.152918-CDS-L-elsbetiae_contig1010:18600..18663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 18601..18663 -
1691682791.0661762-CDS-L-elsbetiae_contig1010:18600..186631691682791.0661762-CDS-L-elsbetiae_contig1010:18600..18663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 18601..18663 -
1622815242.1631901-CDS-L-elsbetiae_contig1010:19233..193711622815242.1631901-CDS-L-elsbetiae_contig1010:19233..19371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 19234..19371 -
1691682791.0742033-CDS-L-elsbetiae_contig1010:19233..193711691682791.0742033-CDS-L-elsbetiae_contig1010:19233..19371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 19234..19371 -
1622815242.178768-CDS-L-elsbetiae_contig1010:19679..198151622815242.178768-CDS-L-elsbetiae_contig1010:19679..19815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 19680..19815 -
1691682791.0819602-CDS-L-elsbetiae_contig1010:19679..198151691682791.0819602-CDS-L-elsbetiae_contig1010:19679..19815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 19680..19815 -
1622815242.1900175-CDS-L-elsbetiae_contig1010:20109..205521622815242.1900175-CDS-L-elsbetiae_contig1010:20109..20552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 20110..20552 -
1691682791.0892544-CDS-L-elsbetiae_contig1010:20109..205521691682791.0892544-CDS-L-elsbetiae_contig1010:20109..20552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 20110..20552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1010.155.1

>prot_L-elsbetiae_contig1010.155.1 ID=prot_L-elsbetiae_contig1010.155.1|Name=mRNA_L-elsbetiae_contig1010.155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=476bp
MEEKLARAPRKPPGSGGGGRQARPARSSSGSTSGQRPVMASPAAAALHAT
GSRDDGAPSTSATTTGAAVPRISGLPPGAAAVAVTDVRAGAKPQRPTSSQ
DNGLGFSGEGFEQGGTSRTAATAAAAAGEGRTGASRHRSSSGGSHTARSS
PATASRGRHSRPHGLQSAVVSGSMSARKAAPGGSVPSGVASSSAQTELKA
AMRAYLLRRVSLDDALSESITQRIFDWDTDMRRMMDTIKIVAAGEGKRTF
ESVPKVMRRQVDARRRSEEARNLHGSWFPSVMRRMLIMVQGREGSEMPRC
MTKLAAALHKVLVSGHTVTPYIFWPLVDASFLPQDHERASSRKMILTCLS
FVHQSPENYYRFLIDSGIKVPTSLKHAFQRAHQKRAQRNKLGSKKSQLGG
GSVNRLTGVVEEGGGHYGGATDERRSSNMSMMAAGGFRYGGGGGASTANL
SDGGGSDDMSDNMSVFSVSTQLEGY*
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mRNA from alignment at L-elsbetiae_contig1010:16744..20552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1010.155.1 ID=mRNA_L-elsbetiae_contig1010.155.1|Name=mRNA_L-elsbetiae_contig1010.155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3809bp|location=Sequence derived from alignment at L-elsbetiae_contig1010:16744..20552- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAAAAGCTAGCGCGAGCTCCCCGAAAGCCTCCCGGCAGCGGCGG GGGCGGCCGACAGGCAAGGCCAGCCAGAAGCAGCAGCGGCAGCACCTCTG GTCAGAGACCCGTCATGGCTTCACCGGCCGCGGCCGCGCTGCACGCGACC GGCAGCAGGGACGACGGCGCACCGTCGACGTCGGCAACAACAACCGGAGC AGCGGTGCCACGAATATCAGGACTACCACCTGGGGCGGCGGCGGTGGCGG TGACTGACGTCCGCGCGGGGGCGAAGCCGCAGAGGCCAACAAGTAGCCAG GATAACGGGTTAGGTTTCTCGGGGGAGGGGTTTGAGCAAGGGGGAACGTC GCGGACAGCGGCGACGGCGGCAGCTGCAGCCGGGGAGGGAAGGACAGGAG CGAGCCGACATCGCTCGTCGTCAGGAGGGTCGCATACAGCCAGGTGAGAT GCGAGGAGCGCGCGGCAGGCTCGTCGCATCCCCCAAAACAGGCTCCTGTG CTAGCTACGTACGTAGCTCCCTGGAGCGTTCACATGCCTCAAACCCGGTT TTTTGGTTTCGGTTTCGGTTCTGCCATACCAAATCACGTCGTGAATTACG CCCAAAATGCGAAGACTTGCTCTGAAGCCGAACGTAGTTTCCTTGGCCCT TTCACGGTATGAACTACACCTGAAGCTTACGAGGAAACAAAAAAAATACT CTATCCCCGCCCTTCGTCCTTTGGGTGTTGGCTCCAGATCTTCTCCGGCG ACCGCCAGCAGGGGGCGTCATTCCCGACCTCACGGCCTTCAAAGCGCGGT TGTTTCCGGGTCGATGAGCGCTAGGAAAGCGGCGCCTGGAGGGTCCGTGC CTTCGGGTGTGGCATCATCATCGGTAAGAGATCTATCTGGCCTGCTACAA TATATACATGGGCATCTCGTAGAGCTACGTGAACGTGTGTGAAGGTAACT GGGAGAAGTTTGGCCGTTGGCTGTCTTTGTGTTAACGGAAGAGATGCTCG CAGGGGTTACGTATGTCGTGATTTTGTGTAGAGGTACAAAGAGGAATGGG GCACGATGTCACCGCGAAATACAACCGCAGCACACGTCAAGCCATCGCTT CGCAAAAATAATGGGCATTGTTTTTTGTGCAAGGGTAATTTAACGATTCA ACTCACAGCGTTGCCATACGCCCACTTTCAGGCGCAGACGGAGTTGAAGG CGGCGATGAGGGCGTATCTCCTGCGGCGGGTCAGCCTGGATGACGCCTTG TCAGAATCCATCACGCAAAGAATCTTTGACTGGGATACAGATATGCGGAG AATGATGGATACCATCAAGGTACAAACCAGCGTCCGCCATCTCTGGCCTT AACGCTTGACTACGACTCCGTTAGAACCCACGCTATCGTACATACTTCCA AGTAAATTTCACCCGCACCAATTCTAGTGATTGCTTTTGCCTGTTTCCTG TACAACGCTCTACAGGAAATACTGTCGGTTTGATCCCTGATTTTACAAAT ACGTAGAATCATGTAGCTTAAAGTAAACGGGCTGTAGTCTAGAATTGGTT TTTGTTCTTACAGCCACTCTCTTACTCCGGTTTCCGGTACGCATACATAT CCATGGCATACATTTAGTGCCTATTCGATCGCGCCTTTTCGGGATTGATC GTCGAGCTTTCGTCGCAGTGGGCTGACTGGGCGGGCCGAGTGGAACTACC GTGCAGTCAAACCAACGCCACCAAAATGTCTGTATGGTTGTCCTTGTGGT CCAAGGTAACTAGCTCGGTGGACAACGTGATTACCTCTAAAAATATTCTA AGCTCCTATTGTGCACTTGGTAAACTTATGGCTAATCCCTGCAACACGGC CGATTTCGTTGCTATTCAACGGAATAAATCCTGCGTCAGATTGTCGCAGC CGGGGAAGGAAAGCGGACGTTCGAGAGCGTGCCGAAAGTCATGCGTCGGC AGGTAATAACACCACTTTTTTCTAACATCTACGGAGTCCGTGGTCTAGCC TTGCATGTTGACATTCCATGAGACCACTGCTGTGTGGTACAAGAATAACT GTGGGGAACTTCGAAGAAGAATCACCGAGCATTTGGTGCCATCAACACTG CAGAGTTGCAATTTAAGTGCTTCGATATTTGACGGCATGCTGTCATCTAG GTCTGCCTGCACGAGAGGTGCGGAAGTACATGCATATCTGCTTATGCTTT GAAGAGGAACTGCTGTATCGTCGAGCCTTTCCTCGAGCGCCGATGTGCTT CGGTTCTCGCACGCCACTCAGTTTATCCTTTCTCCCGTGTTGCAACCACT GGCGGTCCCGTTTATTCTCCTGAACTCTAACCCAAGCCGCGACGGGAGAA AAATTACTTTTATCCATGCGCCTAGTTCATCTTCCTTCCGCCCACGACTA TGCACAAGCACTTGACGATCGATCGTCGAACGAACCCACTCGAACAGAGA CGGTACCATGCATCGGTTGATAAAAACTTCGGGGGAGGAGGGAAACAACC CCGTACAGCGGTGTCTTTCCCCTTGAACATGTTTAGAATCAATGGCCAAT GGTCCTGGTCTTTGTTGGGAGCTCGTGTTAGCATACTTCCATTGCGGTTA TCGTTGTTGCCGTTGTTGTGGTTGTTGCTGTTGCTGCTTTTGTGTTGGTC GTGGCTGCATTTAGCAGTGGCACACATAAGCCGGAACTCAACGGCAACAA ACGCTTCGTTTTTGTTGCCGCCTGTCTGTCTGCCTGTTTCAGGTGGATGC AAGAAGGCGCTCGGAAGAGGCGAGGAATCTGCACGGGTCGTGGTTCCCGT CCGTCATGAGACGGATGCTCATCATGGTGCAGGGCAGGGAGGGCAGTGAA ATGCCGAGATGCATGACCAAGCTCGCCGCAGCATTGCACAAGGTGTCCGG GGGGGGGGTGTTATGCACCTCTCACACGATACGATAGAATGGGTTTCTGC TGAGGATGATTGCTTTAAGGCGTGCTCGCTATCTGTGAGTGTTCCCAGGC GTGAGCAAGGCTATACCTGCACGGGTACGAAACGGCGGAATCCGACCGTC CTTTGCTGAAGAAGATTTCATGGGTCTGGAAAAGGAGGGGTGACGTGGAA ATAAAACACTGCAATGCGGGCGGTTGTCTTGAAAGTACGTACCCGCAGTG CTGTGCGGCGGTTCTATAACGTCAAACGTTGTGCTTTTCGGGGGAAATAC CGCTCCCAAATAGGAGGTGGTAGCACACACTCCCCCGCGATCTTTCCGCG CACCATGGGTCAACACCTGCTACTTGTCTGTCTATTCGCAACGACGAATA TCGCGACGCAGGTGCTCGTGAGCGGACACACGGTGACGCCGTACATCTTC TGGCCCCTGGTGGACGCCTCCTTTCTCCCGCAAGACCACGAGAGGGCCTC CTCCCGGAAGATGATCCTCACCTGCTTATCCTTCGTGCACCAGAGCCCGG AGAACTACTACCGGTTCCTGATCGACAGCGGCATAAAGGTGCCCACCTCA CTCAAGCACGCCTTCCAGAGGGCGCACCAGAAGCGAGCCCAGCGGAACAA GCTGGGCTCGAAGAAGTCGCAGCTCGGCGGCGGCAGCGTGAATCGGCTCA CAGGGGTGGTGGAGGAGGGTGGCGGCCACTACGGGGGGGCGACGGACGAG CGTCGCAGCTCAAACATGAGCATGATGGCGGCGGGGGGGTTCAGGTACGG CGGCGGTGGTGGTGCGAGCACCGCAAACTTGAGCGATGGCGGCGGTAGCG ATGACATGAGCGATAACATGTCGGTGTTCAGCGTCTCCACGCAGCTTGAA GGCTACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1010:16744..20552-

>mRNA_L-elsbetiae_contig1010.155.1 ID=mRNA_L-elsbetiae_contig1010.155.1|Name=mRNA_L-elsbetiae_contig1010.155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2856bp|location=Sequence derived from alignment at L-elsbetiae_contig1010:16744..20552- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAAAAGCTAGCGCGAGCTCCCCGAAAGCCTCCCGGCAGCGGCGG
GGGCGGCCGACAGGCAAGGCCAGCCAGAAGCAGCAGCGGCAGCACCTCTG
GTCAGAGACCCGTCATGGCTTCACCGGCCGCGGCCGCGCTGCACGCGACC
GGCAGCAGGGACGACGGCGCACCGTCGACGTCGGCAACAACAACCGGAGC
AGCGGTGCCACGAATATCAGGACTACCACCTGGGGCGGCGGCGGTGGCGG
TGACTGACGTCCGCGCGGGGGCGAAGCCGCAGAGGCCAACAAGTAGCCAG
GATAACGGGTTAGGTTTCTCGGGGGAGGGGTTTGAGCAAGGGGGAACGTC
GCGGACAGCGGCGACGGCGGCAGCTGCAGCCGGGGAGGGAAGGACAGGAG
CGAGCCGACATCGCTCGTCGTCAGGAGGGTCGCATACAGCCAGATGGAGG
AAAAGCTAGCGCGAGCTCCCCGAAAGCCTCCCGGCAGCGGCGGGGGCGGC
CGACAGGCAAGGCCAGCCAGAAGCAGCAGCGGCAGCACCTCTGGTCAGAG
ACCCGTCATGGCTTCACCGGCCGCGGCCGCGCTGCACGCGACCGGCAGCA
GGGACGACGGCGCACCGTCGACGTCGGCAACAACAACCGGAGCAGCGGTG
CCACGAATATCAGGACTACCACCTGGGGCGGCGGCGGTGGCGGTGACTGA
CGTCCGCGCGGGGGCGAAGCCGCAGAGGCCAACAAGTAGCCAGGATAACG
GGTTAGGTTTCTCGGGGGAGGGGTTTGAGCAAGGGGGAACGTCGCGGACA
GCGGCGACGGCGGCAGCTGCAGCCGGGGAGGGAAGGACAGGAGCGAGCCG
ACATCGCTCGTCGTCAGGAGGGTCGCATACAGCCAGATCTTCTCCGGCGA
CCGCCAGCAGGGGGCGTCATTCCCGACCTCACGGCCTTCAAAGCGCGGTT
GTTTCCGGGTCGATGAGCGCTAGGAAAGCGGCGCCTGGAGGGTCCGTGCC
TTCGGGTGTGGCATCATCATCGATCTTCTCCGGCGACCGCCAGCAGGGGG
CGTCATTCCCGACCTCACGGCCTTCAAAGCGCGGTTGTTTCCGGGTCGAT
GAGCGCTAGGAAAGCGGCGCCTGGAGGGTCCGTGCCTTCGGGTGTGGCAT
CATCATCGGCGCAGACGGAGTTGAAGGCGGCGATGAGGGCGTATCTCCTG
CGGCGGGTCAGCCTGGATGACGCCTTGTCAGAATCCATCACGCAAAGAAT
CTTTGACTGGGATACAGATATGCGGAGAATGATGGATACCATCAAGGCGC
AGACGGAGTTGAAGGCGGCGATGAGGGCGTATCTCCTGCGGCGGGTCAGC
CTGGATGACGCCTTGTCAGAATCCATCACGCAAAGAATCTTTGACTGGGA
TACAGATATGCGGAGAATGATGGATACCATCAAGATTGTCGCAGCCGGGG
AAGGAAAGCGGACGTTCGAGAGCGTGCCGAAAGTCATGCGTCGGCAGATT
GTCGCAGCCGGGGAAGGAAAGCGGACGTTCGAGAGCGTGCCGAAAGTCAT
GCGTCGGCAGGTGGATGCAAGAAGGCGCTCGGAAGAGGCGAGGAATCTGC
ACGGGTCGTGGTTCCCGTCCGTCATGAGACGGATGCTCATCATGGTGCAG
GGCAGGGAGGGCAGTGAAATGCCGAGATGCATGACCAAGCTCGCCGCAGC
ATTGCACAAGGTGGATGCAAGAAGGCGCTCGGAAGAGGCGAGGAATCTGC
ACGGGTCGTGGTTCCCGTCCGTCATGAGACGGATGCTCATCATGGTGCAG
GGCAGGGAGGGCAGTGAAATGCCGAGATGCATGACCAAGCTCGCCGCAGC
ATTGCACAAGGTGCTCGTGAGCGGACACACGGTGACGCCGTACATCTTCT
GGCCCCTGGTGGACGCCTCCTTTCTCCCGCAAGACCACGAGAGGGCCTCC
TCCCGGAAGATGATCCTCACCTGCTTATCCTTCGTGCACCAGAGCCCGGA
GAACTACTACCGGTTCCTGATCGACAGCGGCATAAAGGTGCCCACCTCAC
TCAAGCACGCCTTCCAGAGGGCGCACCAGAAGCGAGCCCAGCGGAACAAG
CTGGGCTCGAAGAAGTCGCAGCTCGGCGGCGGCAGCGTGAATCGGCTCAC
AGGGGTGGTGGAGGAGGGTGGCGGCCACTACGGGGGGGCGACGGACGAGC
GTCGCAGCTCAAACATGAGCATGATGGCGGCGGGGGGGTTCAGGTACGGC
GGCGGTGGTGGTGCGAGCACCGCAAACTTGAGCGATGGCGGCGGTAGCGA
TGACATGAGCGATAACATGTCGGTGTTCAGCGTCTCCACGCAGCTTGAAG
GCTACTAGGTGCTCGTGAGCGGACACACGGTGACGCCGTACATCTTCTGG
CCCCTGGTGGACGCCTCCTTTCTCCCGCAAGACCACGAGAGGGCCTCCTC
CCGGAAGATGATCCTCACCTGCTTATCCTTCGTGCACCAGAGCCCGGAGA
ACTACTACCGGTTCCTGATCGACAGCGGCATAAAGGTGCCCACCTCACTC
AAGCACGCCTTCCAGAGGGCGCACCAGAAGCGAGCCCAGCGGAACAAGCT
GGGCTCGAAGAAGTCGCAGCTCGGCGGCGGCAGCGTGAATCGGCTCACAG
GGGTGGTGGAGGAGGGTGGCGGCCACTACGGGGGGGCGACGGACGAGCGT
CGCAGCTCAAACATGAGCATGATGGCGGCGGGGGGGTTCAGGTACGGCGG
CGGTGGTGGTGCGAGCACCGCAAACTTGAGCGATGGCGGCGGTAGCGATG
ACATGAGCGATAACATGTCGGTGTTCAGCGTCTCCACGCAGCTTGAAGGC
TACTAG
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