mRNA_L-elsbetiae_contig6629.15355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6629.15355.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 374 bits (960), Expect = 4.340e-116 Identity = 250/418 (59.81%), Postives = 276/418 (66.03%), Query Frame = 1 Query: 922 MLSCYTPFLLAIIKRRVADAXXXXXXXXXXXXXXXXXXXXXXXXX---------DAGAAANGNSDGLYAGAG-DRHSGPRSSGPATVEAGGKTSASLVGRGKRWPGDGDDAVPXXXXXXXXXSRCPRELCAEALWALSEYAVLSPGLAAAEVLPLAEGLASDTGEHAQVRRAAVGVLTRRELATDEIAAHACCNLLEDADPRLRREVLARLGRLMKESRIKTAHLARFALLLVDGCEEVRKTAQAVFFDHLQPRPDTVARCLFETYFTLDAEEPVKRRVLERLIAVAHKAAPEQGLQSLGGALVRKATETGDSQAAFFLSLVPPTVNSLEAAEVALRRGHLAQAPAETISLVATHFSRAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKTTAQQALEMAARIGSLA 2145 MLSCYTPFLLAI++RRVAD XXXXXXXX AG AA+G+ D G+G D H R + GGK A+ ++ G G A S CPR LC EAL ALSEYAVLS GLAAAEVLPLAEGLASDT EH QVR AAVGVLTRRELATDEIAAHAC +LLED +P +RREVL RLG+LMKESRIKT HL+RFALLLVD E VR+ AQ VF DHLQPRPDTV RCLFET+FTLDAEE VKR+VL+RL+AVA +AAP QGL+SLGGALVRKA ETGDS+AAFFLSLVPPTVNS EAAEVALRRG LAQ+P TI LVATHFSR A+ G + QALEMAA+IGSLA Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLH--VVQQDGGKVEATDF---RKDGGQGRGATTAASVSLPASS-CPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHAC-SLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVCRCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQRGAGSSLAITASVAGRGG-------------------GAPLSKAQALEMAAQIGSLA 392
BLAST of mRNA_L-elsbetiae_contig6629.15355.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 375 bits (963), Expect = 8.740e-109 Identity = 332/734 (45.23%), Postives = 368/734 (50.14%), Query Frame = 1 Query: 10 QVLCEVLAGVDGGVIASLLRDALEAYAAGDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLLRVLAESQHLFWRRLERRMGELQR-----EGGXXXDHCRRGGGEAPVVSVSV--------------SASEAAVSELSELLHVFRLLASRSLVSPEKSAALEALVFPAALSRRRLIRPAVGLALALDEPHRVLLSSLAVLQDAAFARPSTNVGRACDYVRLVGVLARENASFVAAHVRERYAGGAGPRGGEGED----EDDYMAGASNREAMEREIRRLQEASVTSDGMLSCYTPFLLAIIKRRVADAXXXXXXXXXXXXXXXXXXXXXXXXXDAGAAANGNSDGLYAGAGDRHSGPRSSGPATVEAGGKTSASLVGRGKRWPGDGDDAVPXXXXXXXXXSRCPRELCAEALWALSEYAVLSPGLAAAEVLPLAEGLASDTGEHAQVRRAAVGVLTRRELATDEIAAHACCNLLEDADPRLRREVLARLGRLMKESRIKTAHLARFALLLVDGCEEVRKTAQAVFFDHLQPRPDTVARCLFETYFTLDAEEPVKRRVLERLIAVAHKAAPEQGLQSLGGALVRKATETGDSQAAFFLSLVPPTVNSLEAAEVALRRGHLAQAPAETISLVATHFSRAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKTTAQQALEMAARIGSL 2142 +VLCEVLAGVD G IASLL DALEAYAA D Q LR LA SQ LFWRRLE+RM +++R E G RG V VSV SA+ +SELSELL +F+LLA+RSL+SPE AALEALVFPAALSRRR ACDYVRL+GVLARENASF+AAH+RE+Y+ R GE E EDDYMAG SNREAM A+ +G XXXXXXXXXXXXXXXXXXXX D G A G+ GD + + GGK A++ R D S CPR LC EALWALSEYAVLS GLAAAEVLPLAE LASDT EH QVR AAVGVLTRRELATDEIAAHAC +LLED +P LRREVL RLG+L+KES RCLFETYFTLDAEE VKR+VL+RL+AVA +AAP QGL+SLG ALVRK E GDS+AAFFLSLVPPTVNS EAAEVA RRG LAQ+P TISLVA HFSR A+ G + QALEMAARIGSL Sbjct: 668 EVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGAAASAPVLLRTLALLAEATGHAKNGVDERNGARQPGGSSNRERLAGRSGQHGAGDEEEQ--LRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGGXXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYSARCLSRPGEEESAENGEDDYMAGVSNREAM-------GAATTAEEG----------------------EXXXXXXXXXXXXXXXXXXXXDGDCGGARVGSR-------GDAQDEMQYR--MAQQDGGKVEATVF----REDVGQDRGATAAAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHAC-SLLEDENPCLRREVLVRLGQLIKES-----------------------------------------RCLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGSALVRKVAEAGDSEAAFFLSLVPPTVNSFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQRGAGSSLATTASIAGRGG-------------------GAPLSKAQALEMAARIGSL 1256
BLAST of mRNA_L-elsbetiae_contig6629.15355.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 122 bits (306), Expect = 7.950e-25 Identity = 112/287 (39.02%), Postives = 130/287 (45.30%), Query Frame = 1 Query: 10 QVLCEVLAGVDGGVIASLLRDALEAYAAGDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLLRVLAESQHLFWRRLERRM---------------------GELQREG-GXXXDHCRRGGGEAPVVSVSV----SASEAAVSELSELLHVFRLLASRSLVSPEKSAALEALVFPAALSRRRLIRPAVGLALALDEPHRVLLSSLAVLQDAAFARPSTNVGRACDYVRLVGVLARENASFVAAHVRERY 792 +VL EVLAGVD G IASLL DALEAYAA D + LR LA SQ LFWRRLE+RM G+L+R G G + GGG SA+ AVSELSELL +F+LLA+ SL+S + SAALEALVFPAALSRRRLI + S+ + AF RACDYVRL+GVLARENASF+AAHVRE+Y Sbjct: 554 EVLGEVLAGVDSGAIASLLCDALEAYAAED----------------------------------------------EIAPRDRDGETRKYSNYNSDEEEQLRTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLI----------------VSRSIDIHNSFAFLVLVWG-SRACDYVRLIGVLARENASFIAAHVREQY 777 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6629.15355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6629.15355.1 >prot_L-elsbetiae_contig6629.15355.1 ID=prot_L-elsbetiae_contig6629.15355.1|Name=mRNA_L-elsbetiae_contig6629.15355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=886bp MAWQVLCEVLAGVDGGVIASLLRDALEAYAAGDGDDDDDRRLNSDDAAAAback to top mRNA from alignment at L-elsbetiae_contig6629:139..10593- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6629.15355.1 ID=mRNA_L-elsbetiae_contig6629.15355.1|Name=mRNA_L-elsbetiae_contig6629.15355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10455bp|location=Sequence derived from alignment at L-elsbetiae_contig6629:139..10593- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6629:139..10593- >mRNA_L-elsbetiae_contig6629.15355.1 ID=mRNA_L-elsbetiae_contig6629.15355.1|Name=mRNA_L-elsbetiae_contig6629.15355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5316bp|location=Sequence derived from alignment at L-elsbetiae_contig6629:139..10593- (Laminarionema elsbetiae ELsaHSoW15)back to top |