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Homology
BLAST of mRNA_L-elsbetiae_contig6621.15346.1 vs. uniprot
Match: D8LT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT04_ECTSI) HSP 1 Score: 110 bits (275), Expect = 4.240e-24 Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 3
Query: 324 TMGAARPSHAKKMSSAEQAQAMIEHLEGRVESLEQDKLTGARSVDDVEEEVRDLRKQQKELRRKHPGRRRFLGLF 548
T+GAAR S AKKMS+AEQA+AMI+HL+ VE+LE+DKLTG RS+DDVEE VR+LR+QQKELRRKHPGRRRFLGLF
Sbjct: 301 TVGAARGSSAKKMSNAEQARAMIQHLDEMVEALERDKLTGVRSIDDVEEAVRELRRQQKELRRKHPGRRRFLGLF 375
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 931 |
| Cds size | 363 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816733.5246556-UTR-L-elsbetiae_contig6621:6948..7328 | 1622816733.5246556-UTR-L-elsbetiae_contig6621:6948..7328 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6621 6949..7328 - |
| 1691683773.353877-UTR-L-elsbetiae_contig6621:6948..7328 | 1691683773.353877-UTR-L-elsbetiae_contig6621:6948..7328 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6621 6949..7328 - |
| 1622816733.5698156-UTR-L-elsbetiae_contig6621:9436..9624 | 1622816733.5698156-UTR-L-elsbetiae_contig6621:9436..9624 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6621 9437..9624 - |
| 1691683773.4195125-UTR-L-elsbetiae_contig6621:9436..9624 | 1691683773.4195125-UTR-L-elsbetiae_contig6621:9436..9624 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6621 9437..9624 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816733.5359163-CDS-L-elsbetiae_contig6621:7328..7427 | 1622816733.5359163-CDS-L-elsbetiae_contig6621:7328..7427 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6621 7329..7427 - |
| 1691683773.369566-CDS-L-elsbetiae_contig6621:7328..7427 | 1691683773.369566-CDS-L-elsbetiae_contig6621:7328..7427 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6621 7329..7427 - |
| 1622816733.5465817-CDS-L-elsbetiae_contig6621:8496..8592 | 1622816733.5465817-CDS-L-elsbetiae_contig6621:8496..8592 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6621 8497..8592 - |
| 1691683773.3959224-CDS-L-elsbetiae_contig6621:8496..8592 | 1691683773.3959224-CDS-L-elsbetiae_contig6621:8496..8592 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6621 8497..8592 - |
| 1622816733.556975-CDS-L-elsbetiae_contig6621:9268..9436 | 1622816733.556975-CDS-L-elsbetiae_contig6621:9268..9436 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6621 9269..9436 - |
| 1691683773.4082236-CDS-L-elsbetiae_contig6621:9268..9436 | 1691683773.4082236-CDS-L-elsbetiae_contig6621:9268..9436 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6621 9269..9436 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6621.15346.1 >prot_L-elsbetiae_contig6621.15346.1 ID=prot_L-elsbetiae_contig6621.15346.1|Name=mRNA_L-elsbetiae_contig6621.15346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MEEERARQPAPPPLAAAAAALPSAAARGGGSSSAGGVASVPSSGVTMGAA
RPSHAKKMSSAEQAQAMIEHLEGRVESLEQDKLTGARSVDDVEEEVRDLR
KQQKELRRKHPGRRRFLGLF* back to topmRNA from alignment at L-elsbetiae_contig6621:6949..9624- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6621.15346.1 ID=mRNA_L-elsbetiae_contig6621.15346.1|Name=mRNA_L-elsbetiae_contig6621.15346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig6621:6949..9624- (Laminarionema elsbetiae ELsaHSoW15)
AGGTACAAGGGGGACAAGCAACGCCGTCCTCGTGGGAGATAAGCAGCGGC
AGCGGCAACAGTAGCGGGTACCAAGACGACGACGGCGGCGGCAACACCGG
CAACAGCAGCAGCAGCAGCAGCAGCAGCGATGCCGTCCGAAGAGCAGTGG
CGGCGTGCAACGTCCGCTCGTGGTGGGATATCGCCGCCATGGAGGAGGAG
CGGGCGCGGCAGCCCGCGCCCCCGCCTCTGGCGGCGGCGGCGGCGGCGTT
GCCTTCTGCTGCCGCCAGAGGCGGCGGGTCTAGTTCCGCTGGCGGCGTTG
CTTCTGTGCCGTCGTCTGGTGTGACCATGGGGGCCGCCAGACCATCTCAC
GCAAAGGTACACACAGCAGTAGTAGACGCGCCTAAAATGAACGGTTCCCC
GATTTATACGTTAAGATAAATACATACGAAGTATGTGTATACACGAAGTA
TATATATATGTGTATGATATAATATGTAGTACGCGAATTTGGGAGGAGAC
CATGCACGTTGGATGTAGTCTACTGTCGGTAGGTTTAGTTTGTTGGTTGA
TTCGGGGCCGGCATCGACTGGGTGCCGTGGATGGCGGTGCTGCTGTTGAT
TTCTTAAGAAGTTGCACATCCCCTGGAGCCCAGAAGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTTTTCTTCAAGCGCGTGCCAGCAGA
ACAGCTTCGTGACTCGATCGTTGGTTTTTCCCCGCGCACTCTGATCGATG
ACTCTCTCCCGGGTGTGGAGCTAAATCAGCCTCTCATGAGGTAAGAGTTA
CCCCCCTTGCCTTGCCATTCTCGTTCCCGGCCGGAAGTCGCGAGCCGATT
CGGCCGGTGTGCACCAAACATTTTCCGGTTGCTTCCCTTTGCCCTGTAGC
CCCGGTCTCTCTCTCTCTCTCCCCCCCACCCCACCCCCCCTCCTCCTCTT
TGTTGCACTGCCTGCACATACGGGGCCACGTTTTCGTTCAAAGTCCCCAC
CCCCACCCACCCACCCACCCCCGCCTCCCCAGAAAATGTCGAGCGCGGAG
CAAGCGCAGGCGATGATCGAACACCTCGAGGGGAGGGTGGAGTCCCTGGA
GCAGGACAAGCTAACGGGGGCACGCTCGGTGAGAAAAAAAAACGCAAATC
GCAGATGAAAACCAGATAAAACCAAAAGTGCAATTTGATCGCAGATAAAT
AGCACGCAGTTTAACACTAGTAGAATTCTATTTGTTGGTGTTTGTGTGTG
TTTGTGCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTAGCCAAGGTGTTGG
TTTTGTGGCCCGAGGTTGTGGCGGAAGCGGGCATTGACCAGGGTGTGCGT
TTTGTGCTGTATGTATCTAGTACCCATACCCGCTGGAACGATGGGGTTGT
CCCTCACTGCCGCAAAGTCTCACGCGGTGTCTCTCCCAGCCTCTGCAAGA
GAGGCACACGGAGAGAGAGACAGAGAGAGAGCAAGATGTAGAGTCGGTGG
TGGTCGTCTGGAGCGGTTGAGCCAAGACGTTTTTGATAAATTCGAAGTTA
AAGAGGCGAACATGACGTTTAAAACTCCACTTGCTCTAGTGTAACCATTC
AATGTTGTTGGAGAGTTTTGTCATTCGCGACTGCTGATCCCCAACAGCAG
ACCACAAAGCCATGTAGCGCTCCTCGGTGGAAAGCCAGCACGCACACCCG
TCAGTCGAACAGCCGCGAGGCGCGATTTCGTTTCATATCAACCCCCCTGT
CCGACCGACGCATTCCGGCGGCGAAAAAAACAACGGCCCTCGAAACCACA
ACGGAGTTCCCATACAGCATCTGGCGAGAATTGACCCCCTCCATCTCGTC
CGAACCGGGGGGGGGGTCCAGCGTGTCGCGAACAGTTGTGCCGGCGCGGG
GGGTCGTCGTTTCGCGTGTACTTTTTTCACACGGAGAAGCCCCCCGGCTT
TGGGGGCAGCTCCCAGAGGCAAGCTGTTGTAGGTACCTGGCCTCAAATAA
TCAAAAGACGCTGCTGCGATACTTGATTATATTTGTCGATGTACATACAT
ACCCCCAATCACCACCCCCCCGTCGTCCACACCATGTGCTGTGCCCCCAA
GGATTCCAAAATGATCCGTTGGAAATCATCAAGTATGGACATAATGCGAT
TCGTTTTGTGATGCTCGATTGCTTGCTCGCTCTTTGTGCAACGCAAGGTG
GACGATGTGGAGGAGGAGGTTCGAGATCTCCGCAAGCAACAGAAAGAGCT
GCGCCGAAAACACCCCGGCAGGCGAAGATTCCTCGGGCTGTTTTAGGAAG
AAGAAAGATCCCCCGGAGCTTGTTAGTTTGTTAGGGGTCCACCAACGGGT
GGCTGGTGTGAAATCATTCAGCCGGTTGTTTATGCCGAAAATTAGGATTA
CCTCTTCGGTCTTGTGTAGCCTCTTATCCTCTGGTGTGCGTGCATTTTTT
CGGATCCTCTGATGGCTCCAGCCTTTTTGCGCCCACGGGCCGGTATTTTT
TTGGTTACAGCTAATCACGTGAGAACGACAACAACGTTGTTATGTCTAAG
CCGCAGCGATTTCGGCCCTGGCCAGCGTCTACAAGTGAGGTGTGGATGAT
TTTCCCTGTATGTAGAACACATAGACTTACACGCCCGATCTTACTTTTCG
GGTGGGTGGGTGTTGGGGACCGCGTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6621:6949..9624- >mRNA_L-elsbetiae_contig6621.15346.1 ID=mRNA_L-elsbetiae_contig6621.15346.1|Name=mRNA_L-elsbetiae_contig6621.15346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig6621:6949..9624- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGGAGCGGGCGCGGCAGCCCGCGCCCCCGCCTCTGGCGGCGGC
GGCGGCGGCGTTGCCTTCTGCTGCCGCCAGAGGCGGCGGGTCTAGTTCCG
CTGGCGGCGTTGCTTCTGTGCCGTCGTCTGGTGTGACCATGGGGGCCGCC
AGACCATCTCACGCAAAGATGGAGGAGGAGCGGGCGCGGCAGCCCGCGCC
CCCGCCTCTGGCGGCGGCGGCGGCGGCGTTGCCTTCTGCTGCCGCCAGAG
GCGGCGGGTCTAGTTCCGCTGGCGGCGTTGCTTCTGTGCCGTCGTCTGGT
GTGACCATGGGGGCCGCCAGACCATCTCACGCAAAGAAAATGTCGAGCGC
GGAGCAAGCGCAGGCGATGATCGAACACCTCGAGGGGAGGGTGGAGTCCC
TGGAGCAGGACAAGCTAACGGGGGCACGCTCGAAAATGTCGAGCGCGGAG
CAAGCGCAGGCGATGATCGAACACCTCGAGGGGAGGGTGGAGTCCCTGGA
GCAGGACAAGCTAACGGGGGCACGCTCGGTGGACGATGTGGAGGAGGAGG
TTCGAGATCTCCGCAAGCAACAGAAAGAGCTGCGCCGAAAACACCCCGGC
AGGCGAAGATTCCTCGGGCTGTTTTAGGTGGACGATGTGGAGGAGGAGGT
TCGAGATCTCCGCAAGCAACAGAAAGAGCTGCGCCGAAAACACCCCGGCA
GGCGAAGATTCCTCGGGCTGTTTTAG back to top
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