mRNA_L-elsbetiae_contig6610.15335.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6610.15335.1
Unique NamemRNA_L-elsbetiae_contig6610.15335.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: A0A6H5KVY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.170e-23
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 ALASVGEWEALRKFGSERKSPIGYKPFALACMRTKQTGLYGADAERYITSYID 159
            ALASVGEWEALRKFG+ERKSPIGYKPFALACMR KQTGL G D ERYIT YI+
Sbjct:  739 ALASVGEWEALRKFGAERKSPIGYKPFALACMRKKQTGLLGDDTERYITGYIE 791
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: D7FS70_ECTSI (Vacuolar protein sorting vps16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS70_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.250e-22
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ALASVGEWEALRKFGSERKSPIGYKPFALACMRTKQTGLYGADAERYITSYID 159
            ALASVGEWEALRKFG+ERKSPIGYKPFALACMR K TGL G D ERYIT YI+
Sbjct:  474 ALASVGEWEALRKFGAERKSPIGYKPFALACMRKKPTGLLGDDTERYITGYIE 526
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: W7U1V8_9STRA (Vacuolar protein sorting-associated protein 16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1V8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.790e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 ALASVGEWEALRKFGSERKSPIGYKPFALACMRTKQ 108
            ALA+ G++E L+ F SE+KSP+GYKPFA AC++ KQ
Sbjct:  936 ALAASGQFENLKAFASEKKSPVGYKPFAQACIKHKQ 971
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: A0A836CCV0_9STRA (Vps16, N-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.580e-6
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 ALASVGEWEALRKFGSERKSPIGYKPFALACMRTKQTGLYGADAERYI 144
            ALAS G+W ALR   +ER+SPIGY PFA A +   Q G   A+AE YI
Sbjct: 1165 ALASSGQWAALRLLAAERRSPIGYAPFARAAL---QHGQPTAEAEHYI 1209
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: A0A7S2CBJ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBJ2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.720e-6
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 ALASVGEWEALRKFGSERKSPIGYKPFALACMRTK 105
            ALA   +WE L+KFG E+KSPIGY PFA AC+  +
Sbjct:   86 ALAKSQQWEELKKFGGEKKSPIGYGPFAEACIEQR 120
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: A0A812UTB3_SYMMI (VCL1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UTB3_SYMMI)

HSP 1 Score: 49.3 bits (116), Expect = 2.170e-5
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 LASVGEWEALRKFGSERKSPIGYKPFALACMR 99
             +  G+WE L K  +E+KSPIGYKPFALAC +
Sbjct:  385 FSKTGQWELLSKLATEKKSPIGYKPFALACKK 416
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BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Match: A0A7S4MSF4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MSF4_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 4.110e-5
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 ALASVGEWEALRKFGSERKSPIGYKPFALACMRTKQTGLYGADAERYITSYID 159
            ALASV +WEAL  F  E+KSP+GY PFA  C+   +      +A +YI    D
Sbjct:  728 ALASVPKWEALFNFSKEKKSPVGYAPFAEVCLEKDEI----EEAIKYIPRITD 776
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6610.15335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVY1_9PHAE5.170e-2386.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS70_ECTSI3.250e-2284.91Vacuolar protein sorting vps16 n=1 Tax=Ectocarpus ... [more]
W7U1V8_9STRA1.790e-661.11Vacuolar protein sorting-associated protein 16 n=2... [more]
A0A836CCV0_9STRA4.580e-656.25Vps16, N-terminal region-domain-containing protein... [more]
A0A7S2CBJ2_9STRA6.720e-660.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812UTB3_SYMMI2.170e-559.38VCL1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S4MSF4_9EUKA4.110e-545.28Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6610contigL-elsbetiae_contig6610:10499..10657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6e-18
Seed eggNOG ortholog2880.D7FS70
KEGG koko:K20180
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0006810,GO:0006886,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0030897,GO:0031090,GO:0031338,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035295,GO:0035542,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048565,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055123,GO:0060627,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099023
EggNOG free text desc.regulation of vacuole fusion, non-autophagic
EggNOG OGsKOG2280@1,KOG2280@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.239739-CDS-L-elsbetiae_contig6610:10498..106571622816732.239739-CDS-L-elsbetiae_contig6610:10498..10657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6610 10499..10657 -
1691683772.3934402-CDS-L-elsbetiae_contig6610:10498..106571691683772.3934402-CDS-L-elsbetiae_contig6610:10498..10657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6610 10499..10657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6610.15335.1prot_L-elsbetiae_contig6610.15335.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6610 10499..10657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6610.15335.1

>prot_L-elsbetiae_contig6610.15335.1 ID=prot_L-elsbetiae_contig6610.15335.1|Name=mRNA_L-elsbetiae_contig6610.15335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
ALASVGEWEALRKFGSERKSPIGYKPFALACMRTKQTGLYGADAERYITS
YID
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mRNA from alignment at L-elsbetiae_contig6610:10499..10657-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6610.15335.1 ID=mRNA_L-elsbetiae_contig6610.15335.1|Name=mRNA_L-elsbetiae_contig6610.15335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig6610:10499..10657- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTTGCTTCGGTTGGGGAGTGGGAGGCACTCCGGAAGTTCGGGTCGGA
GCGCAAGAGCCCCATCGGCTACAAGCCCTTCGCCTTGGCGTGCATGCGGA
CGAAGCAGACGGGGCTGTACGGGGCGGACGCGGAGCGGTACATCACGAGT
TACATCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6610:10499..10657-

>mRNA_L-elsbetiae_contig6610.15335.1 ID=mRNA_L-elsbetiae_contig6610.15335.1|Name=mRNA_L-elsbetiae_contig6610.15335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig6610:10499..10657- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTTGCTTCGGTTGGGGAGTGGGAGGCACTCCGGAAGTTCGGGTCGGA
GCGCAAGAGCCCCATCGGCTACAAGCCCTTCGCCTTGGCGTGCATGCGGA
CGAAGCAGACGGGGCTGTACGGGGCGGACGCGGAGCGGTACATCACGAGT
TACATCGATGCGCTTGCTTCGGTTGGGGAGTGGGAGGCACTCCGGAAGTT
CGGGTCGGAGCGCAAGAGCCCCATCGGCTACAAGCCCTTCGCCTTGGCGT
GCATGCGGACGAAGCAGACGGGGCTGTACGGGGCGGACGCGGAGCGGTAC
ATCACGAGTTACATCGAT
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