mRNA_L-elsbetiae_contig6591.15296.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6591.15296.1
Unique NamemRNA_L-elsbetiae_contig6591.15296.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6591.15296.1 vs. uniprot
Match: D7G6N7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6N7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.090e-33
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    1 MRLVSFSKVSAFLLAATLISAPMADAGQKGEEGMDKAKEAVTELVAEE-VTEGFGVGERP-IHRHGAKMKAHKPRMATMGVRQTWDDCVGMDVEEAMEVIKAARPDMKRIVRVKE 339
            MR  SF K +A LLAATL SAPMA+AG  GE GM+KAKEA +  +AEE VTE   VGE P  H H  + K  KPRMATMGV+QTW +CVGMDVEEA+E+IKAARPD+++I +V E
Sbjct:    1 MRFASFPKATALLLAATLPSAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVMVGELPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMIKAARPDLRKITKVPE 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6591.15296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6N7_ECTSI4.090e-3363.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6591contigL-elsbetiae_contig6591:1497..4433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionputative serine protease inhibitor
Ec32 orthologEc-26_000240.1
Exons3
Model size990
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6591.15296.1prot_L-elsbetiae_contig6591.15296.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6591 1497..3980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.341572-CDS-L-elsbetiae_contig6591:1496..15571622816728.341572-CDS-L-elsbetiae_contig6591:1496..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6591 1497..1557 +
1691683769.7496893-CDS-L-elsbetiae_contig6591:1496..15571691683769.7496893-CDS-L-elsbetiae_contig6591:1496..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6591 1497..1557 +
1622816728.354173-CDS-L-elsbetiae_contig6591:3006..32071622816728.354173-CDS-L-elsbetiae_contig6591:3006..3207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6591 3007..3207 +
1691683769.7598042-CDS-L-elsbetiae_contig6591:3006..32071691683769.7598042-CDS-L-elsbetiae_contig6591:3006..3207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6591 3007..3207 +
1622816728.3671122-CDS-L-elsbetiae_contig6591:3705..39801622816728.3671122-CDS-L-elsbetiae_contig6591:3705..3980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6591 3706..3980 +
1691683769.7704384-CDS-L-elsbetiae_contig6591:3705..39801691683769.7704384-CDS-L-elsbetiae_contig6591:3705..3980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6591 3706..3980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.3822803-UTR-L-elsbetiae_contig6591:3980..44331622816728.3822803-UTR-L-elsbetiae_contig6591:3980..4433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6591 3981..4433 +
1691683769.7830865-UTR-L-elsbetiae_contig6591:3980..44331691683769.7830865-UTR-L-elsbetiae_contig6591:3980..4433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6591 3981..4433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6591.15296.1

>prot_L-elsbetiae_contig6591.15296.1 ID=prot_L-elsbetiae_contig6591.15296.1|Name=mRNA_L-elsbetiae_contig6591.15296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MRLVSFSKVSAFLLAATLISAPMADAGQKGEEGMDKAKEAVTELVAEEVT
EGFGVGERPIHRHGAKMKAHKPRMATMGVRQTWDDCVGMDVEEAMEVIKA
ARPDMKRIVRVKEVSQSQYKSPFAAGTLAIIGKILASACVRACVRAFGVS
VCVCVCVCLPLLYRASSASSRSALLLFS*
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mRNA from alignment at L-elsbetiae_contig6591:1497..4433+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6591.15296.1 ID=mRNA_L-elsbetiae_contig6591.15296.1|Name=mRNA_L-elsbetiae_contig6591.15296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2937bp|location=Sequence derived from alignment at L-elsbetiae_contig6591:1497..4433+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCTCGTTTCGTTCTCCAAGGTCTCTGCTTTTCTCTTAGCCGCCAC
GCTAATTTCTGGTGAGCACTTCTATATACATATGTACAAATAAAACGGAG
ACGACGGAGAGGGGCGGTGGAGCGATGTACATACAATACCCATGTACATA
GTAGCGATCGATATCGAGATGGATGCCTGCACGTCGAAAGAGTGCCAACC
TCGTGGAATGCTGTCGGACATCGGAGGCCTTCGAACAACAACGGATGATG
AAAGTTCCAAAACCATATCATACGGAGGTCGAAGTGCCTTACAACCCACT
TGCCGTATATACATTCTGGAAGGTGGTGGTGACTCGCTTGAGCTCCGTGA
AACTTGAAATTACGCGTAGTCTAGACCTCGATAAACATTGCGTCGACCTC
AATGAACAGTTTTTTTGTTGCACGAGGCCGCCTGCAACCCGGGTGCTGGG
AAAGCCAACATCACCAACCGGGGGCCTGGTTCTATCTTGATTTTACCCCA
ACAAGCCGGGGTGTTCCGTGCCGGGTCCTCTCCGCTCAAGCCAAAACTCA
AAACTTTTATGTACGGCGGTGGGTGTGTGTTTTCGTCGCGAATTATCTAC
ACTGCTGTGAGAGATCTCCGAACTCAAGAGTCGGTCTGTGCTGCTACGAA
GGAAAACGAAGAAGGGGTATTTATTTGCAAGAAGCAAGCCTTCCAGGTCA
CCAGTTTGACTGCCGGCAAGTTGAACCCGAAAACGTTTTGCTCACGCACA
TTGCACCGCAGCAGTTAGGTGGCAGCAGTATGTAGCAGCTTTCGCCGCCA
TGAAATGGCACTCAAGGGCAGTAGACCTTACCTCTTCGCCGACAGAGCGA
GTTCTAGGAATACTCTGACCTTTTGGGCGTGGTTCTGTGACGTGTGTGCG
GGACTGTTAAAAGTGCGCGCGCGACCTAACCGCGGCCTAGCCCTACCCCT
GCCCTCCAACCTAGCACTTAACCAACGCCCTGCGACCTAGAACTCTCCCA
ATGCTCCCCGATGGGTCGGTCGGGTTGGGGTTGGGGTTGGGGTATAGGGC
AGCAAAAAAAAATGGTCAGGGTCTGAATTGAATCGGGATCCGCTCGATCC
ATACTAGAACGCTCGGTCGGTCCATCAAGCCACCGGGGTATCTCCGCCCA
CCGACCCTCCCCACCGACCACAAAAGCCCGAGAGACAACCAGAGAACGTT
CTCATAACTTTATTTTGGTGACAAAGTGTAAAAGGCCCACTCACTTCCAA
AGGGCGTCATCTCTCCGTTTGCCCGGCGCGTCTGGACTACGAAAACATCG
CTCTCTCTCTCCCACTACTGCTGCCTGCGTACTTCGCTCTCCGCAATGCA
CACACTGTACATGCGATATGTATGAGTGATATATGGGTTCTTAGAACACC
GCTTTACTATCTAAGTTCCCCAGTCTCTGCCGCATGACACACTACCATAC
ACGTGACCTCATTTTTTTTTGGATTGCATCGCAATGCGGTGTCGTTGCAT
GTGGGGGCAGCCCCGATGGCGGATGCAGGCCAAAAGGGAGAGGAAGGGAT
GGACAAGGCCAAGGAGGCCGTGACGGAACTGGTCGCCGAAGAAGTGACGG
AGGGTTTCGGCGTGGGCGAGCGCCCGATCCACAGGCACGGCGCCAAGATG
AAGGCCCACAAGCCTCGCATGGCGACGATGGGCGTGCGGCAGACGTGGGA
CGACTGTGTCGGTGAGGAGGGAGGAGAGCCGTTTTTTTTTCTTCGTGTCC
CACTTTGTTCGCATGTCGAACGCAGATGGTTGCGGTTTGCCCGCCGAATC
GCCGACTGCCTCTAAATTTGCTTTGGCTCTCAGCACGCAGCTGGACGGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGCCACGGAACTGTACTTACACTA
TTTATGTTCCGATCACAAGCGTATTCGCGTGTGAAACCACCGCCTGTGCA
GCGCATGTCGATTATCGCTTGGCGCTGCACCAACAATCTCGCAGTGTGGC
CCCCTGATTTGTGTGGCGGGCTGCCGCAAACGCCGAAACTACGGTGCTAC
TGATGCGGCTGCGCCGTGCACAAGGCTGGGCAATGCGGCTCACAGGAGTT
AGAGTTTTTCCCGGTCCTTGGGCTTCTTCTGCTTTTCCCGACGGCGCACA
ACCTGCGTTTCTACAATATTCGGCGATTTCTGCTTTTGTTTCTGGTGGAT
GGCACGCAGGCATGGACGTGGAGGAAGCCATGGAAGTGATCAAGGCCGCA
CGACCGGACATGAAGAGAATCGTCAGGGTCAAGGAGGTCAGTCAGTCTCA
GTACAAAAGCCCCTTCGCGGCGGGTACACTAGCTATCATAGGCAAGATTC
TTGCATCTGCGTGCGTGCGTGCGTGCGTGCGTGCGTTTGGTGTTAGTGTG
TGTGTATGTGTATGTGTGTGCCTGCCTCTCCTTTACAGGGCATCTTCTGC
AAGCAGTAGGTCGGCACTACTGTTGTTTTCTTGACAGCTTCGGCCGTGTC
CCGTTGCCCGTGCGGATGCCCGAGCCGCTTGTTCGACCGTCTGTGCCGTC
GGTCGCTACAGTACTGCGACACTTTGTTTTTTGCCGTCACGATTAAGCCG
TGTCGACCTCTCCACTCAGTACTACCCTCTGCTTTTACTCATCAAACGCA
TTATGCCGTCGATCCAGGCGTCACAGGCTATCGTGCCTGTACAAAGATGA
GCACTCAAATAAAAGACCCCCCACAAGGACCCAACAAGATGCTGCCGCTT
TTGTTTTCTAAATTGCTCTGCGTGGCATCGCGCTTCCAATTTTATTTTCC
TTTCTTTGGACCGGAACACAACGATACACACACGACAACGAACGGTAGCA
TTGACGAAGTCACACACAATTGTTCTAGTCCAAAAGATGTTTATTTTATT
TTATTTATTTCCCCAAGCGTCGGGTGATTTATTCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6591:1497..4433+

>mRNA_L-elsbetiae_contig6591.15296.1 ID=mRNA_L-elsbetiae_contig6591.15296.1|Name=mRNA_L-elsbetiae_contig6591.15296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig6591:1497..4433+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCTCGTTTCGTTCTCCAAGGTCTCTGCTTTTCTCTTAGCCGCCAC
GCTAATTTCTGATGCGGCTCGTTTCGTTCTCCAAGGTCTCTGCTTTTCTC
TTAGCCGCCACGCTAATTTCTGCCCCGATGGCGGATGCAGGCCAAAAGGG
AGAGGAAGGGATGGACAAGGCCAAGGAGGCCGTGACGGAACTGGTCGCCG
AAGAAGTGACGGAGGGTTTCGGCGTGGGCGAGCGCCCGATCCACAGGCAC
GGCGCCAAGATGAAGGCCCACAAGCCTCGCATGGCGACGATGGGCGTGCG
GCAGACGTGGGACGACTGTGTCGCCCCGATGGCGGATGCAGGCCAAAAGG
GAGAGGAAGGGATGGACAAGGCCAAGGAGGCCGTGACGGAACTGGTCGCC
GAAGAAGTGACGGAGGGTTTCGGCGTGGGCGAGCGCCCGATCCACAGGCA
CGGCGCCAAGATGAAGGCCCACAAGCCTCGCATGGCGACGATGGGCGTGC
GGCAGACGTGGGACGACTGTGTCGGCATGGACGTGGAGGAAGCCATGGAA
GTGATCAAGGCCGCACGACCGGACATGAAGAGAATCGTCAGGGTCAAGGA
GGTCAGTCAGTCTCAGTACAAAAGCCCCTTCGCGGCGGGTACACTAGCTA
TCATAGGCAAGATTCTTGCATCTGCGTGCGTGCGTGCGTGCGTGCGTGCG
TTTGGTGTTAGTGTGTGTGTATGTGTATGTGTGTGCCTGCCTCTCCTTTA
CAGGGCATCTTCTGCAAGCAGTAGGTCGGCACTACTGTTGTTTTCTTGAG
CATGGACGTGGAGGAAGCCATGGAAGTGATCAAGGCCGCACGACCGGACA
TGAAGAGAATCGTCAGGGTCAAGGAGGTCAGTCAGTCTCAGTACAAAAGC
CCCTTCGCGGCGGGTACACTAGCTATCATAGGCAAGATTCTTGCATCTGC
GTGCGTGCGTGCGTGCGTGCGTGCGTTTGGTGTTAGTGTGTGTGTATGTG
TATGTGTGTGCCTGCCTCTCCTTTACAGGGCATCTTCTGCAAGCAGTAGG
TCGGCACTACTGTTGTTTTCTTGA
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