mRNA_L-elsbetiae_contig657.15274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig657.15274.1
Unique NamemRNA_L-elsbetiae_contig657.15274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig657.15274.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 4.680e-43
Identity = 208/281 (74.02%), Postives = 223/281 (79.36%), Query Frame = 3
Query:  417 IKPRTFSALSSSLVYLNLSDNAFEGALPLAALSPHSAGETSASSRGSGFVSTSEGQTSRGASRIEIAAGMAS-SLLSYVNLSKNKFTGRVSKEIGELTSLETLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRLDGINGEELGRLHLLETLRLDANTFEGSVPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLEENPSLRGPIPAPLASRQGCAVRADELVMEDTEATMLGSKLGGWFLMPRKAR 1256
            I P   SALSSSLVYLNL  NAFEG LP++ LSPHSAG        SG  S  +G++SR   R E AAG+ S S LSY+NL  NKFTGRVS+EIG LTS     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG L+G +G  LGRL  LETLRLD NTF G VPA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RLEENPSLRGPIP  LAS   C VRAD+ V++DTEATMLGS+L  WFLMPRKAR
Sbjct:  243 IHPHVLSALSSSLVYLNLGHNAFEGDLPVSPLSPHSAGGRVRRGSTSGSPSEGQGRSSR-RRRSESAAGVVSASPLSYLNLCHNKFTGRVSEEIGSLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGILEGDDGGGLGRLSSLETLRLDGNTFHGIVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEENPSLRGPIPDQLASGVNCNVRADQPVLDDTEATMLGSRLDEWFLMPRKAR 522          
BLAST of mRNA_L-elsbetiae_contig657.15274.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.230e-37
Identity = 147/280 (52.50%), Postives = 161/280 (57.50%), Query Frame = 3
Query:  417 IKPRTFSALSSSLVYLNLSDNAFEGALPLAALSPHSAGETSASSRGSGFVSTSEGQTSRGASRIEIAAGMASSLLSYVNLSKNKFTGRVSKEIGELTSLETLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRLDGINGEELGRLHLLETLRLDANTFEGSVPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLEENPSLRGPIPAPLASRQGCAVRADELVMEDTEATMLGSKLGGWFLMPRKAR 1256
            I P   S LSSSLVYLNL  NAFEG LP++ LS HSAG        SG  S  +G+ SR       AA +++S LSY+NL  NKFTG V +EIG LTSL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +G +G  LGRL  LE LRLD NTF G VPA+                                                       RSLRLEENPSLRGPIP  LAS   C VRAD+ V+EDTEA MLGSKL  WFLMPRKAR
Sbjct:  382 IHPHILSTLSSSLVYLNLGHNAFEGDLPVSPLSSHSAGGRVRRGSRSGSQSDGQGRNSRRKRSESAAAVVSASPLSYLNLCHNKFTGHVPEEIGSLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDGGGLGRLSSLEILRLDGNTFHGIVPAALGNLARLEVLHLQLDRLWALAVRDNNLSGRVPESLGCLTGL--------------RSLRLEENPSLRGPIPDQLASGVNCNVRADQPVLEDTEAAMLGSKLDEWFLMPRKAR 647          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig657.15274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPI3_ECTSI4.680e-4374.02Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JTB3_9PHAE1.230e-3752.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig657contigL-elsbetiae_contig657:26383..32362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue3.8e-41
Seed eggNOG ortholog2880.D7FPI3
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001704,GO:0001706,GO:0003006,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006810,GO:0006833,GO:0006950,GO:0007275,GO:0007369,GO:0007389,GO:0007492,GO:0008104,GO:0008150,GO:0009505,GO:0009531,GO:0009611,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009987,GO:0010154,GO:0010453,GO:0010470,GO:0016020,GO:0022414,GO:0022603,GO:0030104,GO:0030154,GO:0030312,GO:0032501,GO:0032502,GO:0033036,GO:0035987,GO:0042044,GO:0042592,GO:0042659,GO:0044426,GO:0044462,GO:0044464,GO:0045184,GO:0045595,GO:0045995,GO:0048226,GO:0048316,GO:0048598,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051302,GO:0055065,GO:0055067,GO:0055075,GO:0055080,GO:0061458,GO:0065001,GO:0065007,GO:0065008,GO:0071944,GO:0090558,GO:0090708,GO:0098771,GO:0099402,GO:1903224,GO:1905392,GO:1905421,GO:2000026,GO:2000067,GO:2000280
EggNOG free text desc.Leucine rich repeat N-terminal domain
EggNOG OGs2QV35@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons12
Model size2155
Cds size1302
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig657.15274.1prot_L-elsbetiae_contig657.15274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig657 26445..30026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.5543349-UTR-L-elsbetiae_contig657:26382..264441622816725.5543349-UTR-L-elsbetiae_contig657:26382..26444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 26383..26444 +
1691683767.644153-UTR-L-elsbetiae_contig657:26382..264441691683767.644153-UTR-L-elsbetiae_contig657:26382..26444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 26383..26444 +
1622816725.6664171-UTR-L-elsbetiae_contig657:30026..301001622816725.6664171-UTR-L-elsbetiae_contig657:30026..30100Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 30027..30100 +
1691683767.7554967-UTR-L-elsbetiae_contig657:30026..301001691683767.7554967-UTR-L-elsbetiae_contig657:30026..30100Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 30027..30100 +
1622816725.6830459-UTR-L-elsbetiae_contig657:30515..307121622816725.6830459-UTR-L-elsbetiae_contig657:30515..30712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 30516..30712 +
1691683767.7648315-UTR-L-elsbetiae_contig657:30515..307121691683767.7648315-UTR-L-elsbetiae_contig657:30515..30712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 30516..30712 +
1622816725.696005-UTR-L-elsbetiae_contig657:31153..312921622816725.696005-UTR-L-elsbetiae_contig657:31153..31292Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 31154..31292 +
1691683767.774368-UTR-L-elsbetiae_contig657:31153..312921691683767.774368-UTR-L-elsbetiae_contig657:31153..31292Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 31154..31292 +
1622816725.7076926-UTR-L-elsbetiae_contig657:31564..317171622816725.7076926-UTR-L-elsbetiae_contig657:31564..31717Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 31565..31717 +
1691683767.7837706-UTR-L-elsbetiae_contig657:31564..317171691683767.7837706-UTR-L-elsbetiae_contig657:31564..31717Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 31565..31717 +
1622816725.7189496-UTR-L-elsbetiae_contig657:32134..323621622816725.7189496-UTR-L-elsbetiae_contig657:32134..32362Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 32135..32362 +
1691683767.7949538-UTR-L-elsbetiae_contig657:32134..323621691683767.7949538-UTR-L-elsbetiae_contig657:32134..32362Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 32135..32362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.5693076-CDS-L-elsbetiae_contig657:26444..264981622816725.5693076-CDS-L-elsbetiae_contig657:26444..26498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 26445..26498 +
1691683767.657527-CDS-L-elsbetiae_contig657:26444..264981691683767.657527-CDS-L-elsbetiae_contig657:26444..26498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 26445..26498 +
1622816725.5805573-CDS-L-elsbetiae_contig657:26809..269291622816725.5805573-CDS-L-elsbetiae_contig657:26809..26929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 26810..26929 +
1691683767.6677954-CDS-L-elsbetiae_contig657:26809..269291691683767.6677954-CDS-L-elsbetiae_contig657:26809..26929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 26810..26929 +
1622816725.5932252-CDS-L-elsbetiae_contig657:27323..274091622816725.5932252-CDS-L-elsbetiae_contig657:27323..27409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 27324..27409 +
1691683767.6792345-CDS-L-elsbetiae_contig657:27323..274091691683767.6792345-CDS-L-elsbetiae_contig657:27323..27409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 27324..27409 +
1622816725.604136-CDS-L-elsbetiae_contig657:27617..276991622816725.604136-CDS-L-elsbetiae_contig657:27617..27699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 27618..27699 +
1691683767.690299-CDS-L-elsbetiae_contig657:27617..276991691683767.690299-CDS-L-elsbetiae_contig657:27617..27699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 27618..27699 +
1622816725.6181111-CDS-L-elsbetiae_contig657:27995..285501622816725.6181111-CDS-L-elsbetiae_contig657:27995..28550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 27996..28550 +
1691683767.704846-CDS-L-elsbetiae_contig657:27995..285501691683767.704846-CDS-L-elsbetiae_contig657:27995..28550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 27996..28550 +
1622816725.629792-CDS-L-elsbetiae_contig657:28827..289201622816725.629792-CDS-L-elsbetiae_contig657:28827..28920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 28828..28920 +
1691683767.7176678-CDS-L-elsbetiae_contig657:28827..289201691683767.7176678-CDS-L-elsbetiae_contig657:28827..28920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 28828..28920 +
1622816725.6420357-CDS-L-elsbetiae_contig657:29262..294861622816725.6420357-CDS-L-elsbetiae_contig657:29262..29486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 29263..29486 +
1691683767.7328193-CDS-L-elsbetiae_contig657:29262..294861691683767.7328193-CDS-L-elsbetiae_contig657:29262..29486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 29263..29486 +
1622816725.6524775-CDS-L-elsbetiae_contig657:29938..300261622816725.6524775-CDS-L-elsbetiae_contig657:29938..30026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 29939..30026 +
1691683767.746237-CDS-L-elsbetiae_contig657:29938..300261691683767.746237-CDS-L-elsbetiae_contig657:29938..30026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 29939..30026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig657.15274.1

>prot_L-elsbetiae_contig657.15274.1 ID=prot_L-elsbetiae_contig657.15274.1|Name=mRNA_L-elsbetiae_contig657.15274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=434bp
MKIGTLTILRSLNLGMNKLNGAIPRELASLHLLVELRVRENRLAGKIPPL
LSNMRSLQVLDLTSNLLQGHIPESLGGMTDLRELWLGGNQLVGVIPETLE
KLDDLQSLDLSRNKFAGTIKPRTFSALSSSLVYLNLSDNAFEGALPLAAL
SPHSAGETSASSRGSGFVSTSEGQTSRGASRIEIAAGMASSLLSYVNLSK
NKFTGRVSKEIGELTSLETLDLSHNKLEGEVPPDIGNCVALRVLSFSRCG
LSGRLDGINGEELGRLHLLETLRLDANTFEGSVPASFGNLTRLEVLQLQC
NCFNGQLPSTLGRLDRLWAFTVRDNNLSGRVPDSLSRLTELRSLRLEENP
SLRGPIPAPLASRQGCAVRADELVMEDTEATMLGSKLGGWFLMPRKARQQ
AKQHFFLVTPPCELAWFDTCPPWCHTSATSSPA*
back to top

mRNA from alignment at L-elsbetiae_contig657:26383..32362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig657.15274.1 ID=mRNA_L-elsbetiae_contig657.15274.1|Name=mRNA_L-elsbetiae_contig657.15274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5980bp|location=Sequence derived from alignment at L-elsbetiae_contig657:26383..32362+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTCTAACGAGTCTCACGGCTCTTGACCTGGCATGGAATAAGCTTACA GGCACAATTCCGATGAAGATCGGCACCTTGACGATCCTTCGCAGCCTGAA CCTGGGCATGAACAAGGCGAGATGACAAATGTGGCCCTCGCGGGGGAGTC AATACTTCAAAGTACATGATCTGTTTATCAACGCTTATTATCTGTTTAAC CCTTCAGACTGTTGCGAAGACTCCCCAACTCAGAACCACTGTGTGGACTT ACTCCATCCTTTCGAAGCTTCCACGGTGCTTTGGTCACTACGCCAACGCA GATTCACATGTTCTGCTTGTTTTTTTTCACCCGTCAAAATCAGCCAAACA CTTTGCGGTAGCCAGAAGATAACGATGGATCCTTTAACTCTCGGCATCTG ATTCCGCGTACTGTTTTCCGAACTCAGCTAAACGGTGCGATCCCCAGGGA GCTGGCCTCCTTGCACCTCCTCGTCGAGCTGCGCGTGCGAGAAAACAGGC TTGCGGGAAAGATACCGCCGTTGTTGAGCAATATGCGTTCACTCCAGGTA CACGTTCGTATCTTGGGTCCCCTGCCAGGTATTGCCTACGTATCAGTTCT AGGTGTATTTTCTGCGTCGAGCTGTCCAAGTACTCCTGGTCCGAGCCGGC TGCCAAAGTTAAAGAGCACTAAGCACCCACAAATCAGCACAACAGTCGTG GTTTTATGAATAGAAATAAAGTCTGATGCGAATACGTAGTTGTGTTAGTA GCGTACTACGTCGCTGGTATTCATCCAGAGATCCCACCCCAAGCTGTCTG ATTCTACCGAACAACCCGCTGAAAGGCTGATAAAACCTCGTGCGGCATGG TGATACCTTTTGTCGACAGTGACAGTCATCAAAAGCATGAACATAAGTTA GAAGAAAATCCCACCCTACATTGTCCTATTGCGGTGATCAGGTTCTCGAC TTGACCTCAAACTTGCTCCAGGGCCATATTCCGGAAAGCCTCGGTGGAAT GACGGATCTGCGTGAGCTTTGGCTAGGGTGAGTTGGTCTACATCCAAACC TATGTTTTCCGAGTCTATTTTTTTTAGATTGTCTTGGTATCCCCGGTATT TTCGCTTTTGTTCGAGGTTCCATGTGAGACCCCCAAAGTGGCAACGGCGA AAATTGTCTGCGTGCTTTCAATACTCGTCTCTTGGTACTGCTACAATGCA ACAGACCTCTGCTTTGATCCCTTTTGTTTCGACAGCGGAAACCAGCTCGT CGGAGTGATCCCGGAAACTCTAGAGAAGCTGGACGACCTTCAAAGCCTCG ATTTGTCTCGCAACAAGGTCAGAGTGTTGTGCAGAACAAAAGACGTAAGA CATCAGCTGGTTTTCAATGGCACCCAGAGCGCACGCTCTCTGCCTCGGCA ATCGTACTCTTGGACCCAATGCCATAGAGGAAGAAGTGCGGCGCTGTAAC AATCTGTGTGTTGTTGGACATTGTTTCCTTCATCGTATCGGTAGCGGTTT ATACCGTTATTGATCTTCGCCCTATCGCCACTGCCGATATCACACCCCAC CAGTAACTCGCCACCTTCTTCTTTGTGCGCGCACTCGCTGTCGAACCACT ACCCCCTGCACAGTTTGCTGGAACGATAAAGCCCCGTACATTTAGTGCAC TGTCTTCATCGTTGGTCTACCTTAACCTCAGTGACAACGCGTTTGAAGGG GCCCTCCCACTCGCCGCCCTGTCGCCGCACTCTGCGGGCGAGACGTCTGC ATCTTCGAGAGGATCGGGTTTCGTGTCTACATCCGAAGGACAAACAAGTA GAGGAGCCAGTCGGATCGAGATTGCGGCGGGGATGGCATCTTCCTTGCTC TCTTACGTAAACCTCTCGAAAAATAAATTTACGGGCCGTGTTTCCAAGGA AATAGGGGAGCTGACCTCGCTGGAGACGCTGGATTTGTCTCACAACAAGC TGGAAGGCGAGGTCCCTCCTGACATCGGAAACTGTGTCGCCCTGCGTGTC CTGTCTTTTTCCCGATGCGGCCTTTCGGGACGGTTGGACGGGATCAACGG GGAGGAGTTGGGAAGGCTTCATTTGTTGGAAACCCTTCGACTAGACGCGA ACACGTTTGAAGGGAGCGTGCCCGCATCATTCGGAAACCTTACCCGGCTC GAAGTTCTTCAGCTGCAGGTTTGCTTTTGAGCTGAGCGAAGATGCTGTCG TCATGTCTGACGGAATACAACTGGTGGAGTTGCAGTCGCGGTGGGTACAT CCGGACGCCGCGTGCCCTCCCCACTGCAGAACATCGGCCAAAAGACTGCG TCTTATAATAGTATTCATCGCTGATGGGTTGCTCGTGCCATGGGCCAGAT CGTCAAAATTTTCTTGCCGGGTCCAATGTACGATTAAGTTATTCTCGACC GCTCTTCTGCCGCCCCTGCTGCTGCTGTGTTGATGTTTTTTCAAGTGCAA TTGTTTCAATGGGCAGCTTCCTTCAACTCTAGGACGGCTGGATCGGTTGT GGGCGTTCACAGTCCGAGACAACAACCTTTCGGGAAGGGTATGTGTGCCC TGCCTACAACTGGTCGCATTGATGTTTGTTTAGAACGAGGTGGTCTGCTG ATGAAGGATGAATACCATGTTGTTCAGTTGCAGCATTTGCTGCTGCTGGT GGCGCCCAGAACACCACATTATGTTCAACAAGAGAGGGAAACTTGCCGCT ACCGAGAAGTCTTCTCTGTTTCATTTGTGTTTGCGCGGCACGTTTGGTAC GCACGTGTTGCTGCTTCCCTCGTCCAAACCAATCGAGCTCGGGTTAACCC CACCACCACGAAAAACAATTACTGCGTGCAGACCAGTAACATCAACAACA CACCGTTACACCACGTGAAATGGGCATCAGGTTCCCGATTCCCTCAGTCG TCTCACTGAGCTGCGATCTCTCCGCCTCGAGGAGAATCCTTCTCTCCGAG GCCCGATCCCTGCGCCACTAGCATCCCGGCAGGGTTGCGCCGTGCGCGCA GACGAGCTAGTGATGGAAGACACGGAGGCTACGATGCTCGGATCCAAGCT CGGCGGGTGGTTCTTGATGCCACGGAAGGCGAGACAGCAAGCTAAACAGC ATTTGTATCAGATACGTGATAGACTGTAACAAAAGTGTTGGAGGTGTGCC GAGTTGATCGGTCCTTCGGAAGGTCCAAAATTTCAAAGCAAGAGGAGGGA TACGAGCAGGCAGAGCCCAGGAACTGGTGCAGAGGAAGGAACAGGTGTTT TTTGTTCTTTTATATGCTTCCTAAACAAACAGTGATGAGCCTCCGCTTGT GGCTATCTCTACGGGTTTTGAGAGCTCGTCTTTCGTACAGGAATTGCGTT GTGATTGCTGCCGAATGGCGAAAGGGTGCCAAAATCGCTCGTGATGGTTG CTACATAGAAGCGCTCGTTGCGCCTGCCGAGCCTCTGAACGCCGAATGAG CTGTGTGCCCCGAAATGCACGAGAAAAAATCGATGGCCTACCCGCCCGGG TTTTCTTCTTTTGATGGTTTGGCGCGCGGCAATAGGCGTTTCTCAACTTG CAGGAGTTTCCTGGTTACACCTCCGTGCGAACTTGCCTGGTTCGACACGT GTCCACCGTGGTGCCATACGAGTGCCACGTCTTCACCGGCGTAAAGGGAC GCAGGCTTGTCGTTCGTCGGAGGGAAATCGCGTTTTTTTCCCATTGCTGG GATCTGCCACCGGACCAGGTGTGTAACAAACAAAACGGCGCTGGTTACGA TTTTGCACCCACGTTAGTACCCGCGGGGTTACGAGTCAATTTTCAGCAAG TACAGGGACATTATTTTGGACCGCGTGGCACAGGGCGCAACTCGCTTGCG GATTCCGCATCTTCAAAGAACGAAGAATGGGCCAGATCTGACGATGCAGC GCTTGGTTTCTTCTGAACAATATTCGGGTATGGCGATCAGCCTAGGATAA TGGAGGACACCCCTGGAACGCTGCCCCCCCCCAAAGTGTCCAAGGTCTCT CATACATATCCGCCCGCTCTTTTTTAGACTGGACGTCAACCCATTTTTTC CCACAACTAATATGGGCCCACCTCCGTCCCGCCTCACGATTCGCCACGGC CAAACCCAACTCAACAATCGCAATAATAATCAGTGTCCCCCAAGGCCCGA ACTCTTGGACGGACCACACCCGGACACGCCCGACCGCACCAAGCTCAAGC ACATGAAGGCATGCCTGCGGGAAGCCCCCAAGAGCATACAGTATGTTTGG GTCGACATGCTTTGTGTACCGCTTGCAGAATCGAAGCGGCGGAGGGCTGC GGGACGCTCGGTCCCCTTCTTCGTGCAGAAGTGAGGACAAGCAGGAGGTC GTGGGGCCTTGAGTTTCTTTTTTGTTCTTGCCTCTTTACCTGTGTGTAGT GAGGGGAAGGGGTGCGTTTTATGTATCAACGAGGCGCTTGGTGGCGAGGG GTTGAGGGGCGTACGTGGACTTTAAAAGTTATACCATCCACCTCTAACGT AATCGGGAAGAAATGGTCCTCCGCCTTGGCGGGGCACGGATGCAGCTTCG CATCACCGCGTCTGGTGGCATGTTCATAATCGCAGCCTTTTGACCCCCCC CCCCCAAACACCCTTCCCTGGTATATGGCCTTCACGGAAACAAGCATATA ATACCCCCCCACAATCCCCCGTCATCGCTTCTCGCGATTTCATGTGGAGT GCCAACAATATTTCAACATCCGCCGTGTCTTGCATCGCTCGCGCGTGCCT GATGAATAAATGGGTGCAAAGCTCCGGAAGATTCTACGTCTTGGCGCCAG ACAGCGGCAACCTCGAACGGCATAAAAAGCGCGCGTGGTGCAGGCTAGAG GCCCTCTGCGCCGCTTGCCCTTTCCAGCCTTGCCAGCTCGAATCTGCTTT CTCGGCCAAGGTGTGCGATACTGCTGTTGCGTGTTGTGTACCGGTGGTAT GGCTTGTTTGTGCTCTATTTATGTAAGACTCTTTACTCGCTGCGAGGAGC CGATTGAGAAGGCACCACTGAATCTATTGTCCTGGAGAGCATGTCTGTCT AGTATCTAGTCTGGTCTAGCTATTTACTGGGTGAGCCGGGGTTTCGTCTC TTGTTTTTACGCCCCCACCCGCCCTTTTCGTGTGGTGCTCTTTCTGTACT ACCATGCTTCTCGGGCCGTTATATCTGAGCAGCCTGCTTGGAATTCGGCG GCGACTCGTTTTGTGTACGACGCTGTGGAGTTTTTCGTGAGCACGTGGGA AAAAGGCACCCGACACGAGGAGCGTTTGACAGGGCGTGGCGAGCTCGAAG CAAAAGGGTTTTTGCGCGATCCAGTGACCGGCAAGGTACGCGTGGGTCAC CTCTGGAGAAGCAGCTAAAGTAAACTCAGGCAGGCAGCAAAGAAAACAAA TACATCTTTACTGCATAAACACCATTCATTACCTTCTTGCGGCCCACGGA AGGAACGGCGGTGTTTCTACGCCCTTGCACCAGCTCAGGGGCGACGTCTG CAGATAACTTACATGGATTATCGCTCTGGCGGCAACTTTTCCGGCACGAA ACGACGTCGTACCCCCCAATTTCCGTCAGTCTTCCCGAGAAATTGCCTCT TTGGCATTGGCTATCAATACGGTTGGTTATCTACAAAAAAGGAAAATTAT TGGTATACCCCAAGACAAACCTCCCGCATTTGACGAAATACACGCTACAT ATCTGGAAATAAATTCGTATCCACTACGGCTGCACCAAACACAAAAAAAC AGCTGAGCGATCCCAAGGATCGTCAGGATATCGCCGAGGCCACGCTTGGA GCAGTCAACGTGATGGAGCTCGCCGGCCGAATCGACCCGGCCGTGGCCAA AATTGTGCGGTTTTCGGCCAGAAAGGTACTCTACGGCTCGCAGGGCTGGC AGGGACACAGCGCCGATGAGGAAGAGGTACTCTCTCTTCGCTCGGAGAAG ACTGGCGGCGGGGAAGCTACTGCTGACGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig657:26383..32362+

>mRNA_L-elsbetiae_contig657.15274.1 ID=mRNA_L-elsbetiae_contig657.15274.1|Name=mRNA_L-elsbetiae_contig657.15274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2604bp|location=Sequence derived from alignment at L-elsbetiae_contig657:26383..32362+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATCGGCACCTTGACGATCCTTCGCAGCCTGAACCTGGGCATGAA
CAAGATGAAGATCGGCACCTTGACGATCCTTCGCAGCCTGAACCTGGGCA
TGAACAAGCTAAACGGTGCGATCCCCAGGGAGCTGGCCTCCTTGCACCTC
CTCGTCGAGCTGCGCGTGCGAGAAAACAGGCTTGCGGGAAAGATACCGCC
GTTGTTGAGCAATATGCGTTCACTCCAGCTAAACGGTGCGATCCCCAGGG
AGCTGGCCTCCTTGCACCTCCTCGTCGAGCTGCGCGTGCGAGAAAACAGG
CTTGCGGGAAAGATACCGCCGTTGTTGAGCAATATGCGTTCACTCCAGGT
TCTCGACTTGACCTCAAACTTGCTCCAGGGCCATATTCCGGAAAGCCTCG
GTGGAATGACGGATCTGCGTGAGCTTTGGCTAGGGTTCTCGACTTGACCT
CAAACTTGCTCCAGGGCCATATTCCGGAAAGCCTCGGTGGAATGACGGAT
CTGCGTGAGCTTTGGCTAGGCGGAAACCAGCTCGTCGGAGTGATCCCGGA
AACTCTAGAGAAGCTGGACGACCTTCAAAGCCTCGATTTGTCTCGCAACA
AGCGGAAACCAGCTCGTCGGAGTGATCCCGGAAACTCTAGAGAAGCTGGA
CGACCTTCAAAGCCTCGATTTGTCTCGCAACAAGTTTGCTGGAACGATAA
AGCCCCGTACATTTAGTGCACTGTCTTCATCGTTGGTCTACCTTAACCTC
AGTGACAACGCGTTTGAAGGGGCCCTCCCACTCGCCGCCCTGTCGCCGCA
CTCTGCGGGCGAGACGTCTGCATCTTCGAGAGGATCGGGTTTCGTGTCTA
CATCCGAAGGACAAACAAGTAGAGGAGCCAGTCGGATCGAGATTGCGGCG
GGGATGGCATCTTCCTTGCTCTCTTACGTAAACCTCTCGAAAAATAAATT
TACGGGCCGTGTTTCCAAGGAAATAGGGGAGCTGACCTCGCTGGAGACGC
TGGATTTGTCTCACAACAAGCTGGAAGGCGAGGTCCCTCCTGACATCGGA
AACTGTGTCGCCCTGCGTGTCCTGTCTTTTTCCCGATGCGGCCTTTCGGG
ACGGTTGGACGGGATCAACGGGGAGGAGTTGGGAAGGCTTCATTTGTTGG
AAACCCTTCGACTAGACGCGAACACGTTTGAAGGGAGCGTGCCCGCATCA
TTCGGAAACCTTACCCGGCTCGAAGTTCTTCAGCTGCAGTTTGCTGGAAC
GATAAAGCCCCGTACATTTAGTGCACTGTCTTCATCGTTGGTCTACCTTA
ACCTCAGTGACAACGCGTTTGAAGGGGCCCTCCCACTCGCCGCCCTGTCG
CCGCACTCTGCGGGCGAGACGTCTGCATCTTCGAGAGGATCGGGTTTCGT
GTCTACATCCGAAGGACAAACAAGTAGAGGAGCCAGTCGGATCGAGATTG
CGGCGGGGATGGCATCTTCCTTGCTCTCTTACGTAAACCTCTCGAAAAAT
AAATTTACGGGCCGTGTTTCCAAGGAAATAGGGGAGCTGACCTCGCTGGA
GACGCTGGATTTGTCTCACAACAAGCTGGAAGGCGAGGTCCCTCCTGACA
TCGGAAACTGTGTCGCCCTGCGTGTCCTGTCTTTTTCCCGATGCGGCCTT
TCGGGACGGTTGGACGGGATCAACGGGGAGGAGTTGGGAAGGCTTCATTT
GTTGGAAACCCTTCGACTAGACGCGAACACGTTTGAAGGGAGCGTGCCCG
CATCATTCGGAAACCTTACCCGGCTCGAAGTTCTTCAGCTGCAGTGCAAT
TGTTTCAATGGGCAGCTTCCTTCAACTCTAGGACGGCTGGATCGGTTGTG
GGCGTTCACAGTCCGAGACAACAACCTTTCGGGAAGGTGCAATTGTTTCA
ATGGGCAGCTTCCTTCAACTCTAGGACGGCTGGATCGGTTGTGGGCGTTC
ACAGTCCGAGACAACAACCTTTCGGGAAGGGTTCCCGATTCCCTCAGTCG
TCTCACTGAGCTGCGATCTCTCCGCCTCGAGGAGAATCCTTCTCTCCGAG
GCCCGATCCCTGCGCCACTAGCATCCCGGCAGGGTTGCGCCGTGCGCGCA
GACGAGCTAGTGATGGAAGACACGGAGGCTACGATGCTCGGATCCAAGCT
CGGCGGGTGGTTCTTGATGCCACGGAAGGCGAGACAGCAAGCTAAACAGC
ATTTGTTCCCGATTCCCTCAGTCGTCTCACTGAGCTGCGATCTCTCCGCC
TCGAGGAGAATCCTTCTCTCCGAGGCCCGATCCCTGCGCCACTAGCATCC
CGGCAGGGTTGCGCCGTGCGCGCAGACGAGCTAGTGATGGAAGACACGGA
GGCTACGATGCTCGGATCCAAGCTCGGCGGGTGGTTCTTGATGCCACGGA
AGGCGAGACAGCAAGCTAAACAGCATTTTTTCCTGGTTACACCTCCGTGC
GAACTTGCCTGGTTCGACACGTGTCCACCGTGGTGCCATACGAGTGCCAC
GTCTTCACCGGCGTAATTTCCTGGTTACACCTCCGTGCGAACTTGCCTGG
TTCGACACGTGTCCACCGTGGTGCCATACGAGTGCCACGTCTTCACCGGC
GTAA
back to top