prot_L-elsbetiae_contig657.15274.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig657.15274.1
Unique Nameprot_L-elsbetiae_contig657.15274.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length434
Homology
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BLAST of mRNA_L-elsbetiae_contig657.15274.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 4.400e-45
Identity = 208/281 (74.02%), Postives = 223/281 (79.36%), Query Frame = 0 
Query:  119 IKPRTFSALSSSLVYLNLSDNAFEGALPLAALSPHSAGETSASSRGSGFVSTSEGQTSRGASRIEIAAGMAS-SLLSYVNLSKNKFTGRVSKEIGELTSLETLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRLDGINGEELGRLHLLETLRLDANTFEGSVPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLEENPSLRGPIPAPLASRQGCAVRADELVMEDTEATMLGSKLGGWFLMPRKAR 398
            I P   SALSSSLVYLNL  NAFEG LP++ LSPHSAG        SG  S  +G++SR   R E AAG+ S S LSY+NL  NKFTGRVS+EIG LTS     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG L+G +G  LGRL  LETLRLD NTF G VPA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RLEENPSLRGPIP  LAS   C VRAD+ V++DTEATMLGS+L  WFLMPRKAR
Sbjct:  243 IHPHVLSALSSSLVYLNLGHNAFEGDLPVSPLSPHSAGGRVRRGSTSGSPSEGQGRSSR-RRRSESAAGVVSASPLSYLNLCHNKFTGRVSEEIGSLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGILEGDDGGGLGRLSSLETLRLDGNTFHGIVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEENPSLRGPIPDQLASGVNCNVRADQPVLDDTEATMLGSRLDEWFLMPRKAR 522
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BLAST of mRNA_L-elsbetiae_contig657.15274.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.890e-39
Identity = 147/280 (52.50%), Postives = 161/280 (57.50%), Query Frame = 0 
Query:  119 IKPRTFSALSSSLVYLNLSDNAFEGALPLAALSPHSAGETSASSRGSGFVSTSEGQTSRGASRIEIAAGMASSLLSYVNLSKNKFTGRVSKEIGELTSLETLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRLDGINGEELGRLHLLETLRLDANTFEGSVPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLEENPSLRGPIPAPLASRQGCAVRADELVMEDTEATMLGSKLGGWFLMPRKAR 398
            I P   S LSSSLVYLNL  NAFEG LP++ LS HSAG        SG  S  +G+ SR       AA +++S LSY+NL  NKFTG V +EIG LTSL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +G +G  LGRL  LE LRLD NTF G VPA+                                                       RSLRLEENPSLRGPIP  LAS   C VRAD+ V+EDTEA MLGSKL  WFLMPRKAR
Sbjct:  382 IHPHILSTLSSSLVYLNLGHNAFEGDLPVSPLSSHSAGGRVRRGSRSGSQSDGQGRNSRRKRSESAAAVVSASPLSYLNLCHNKFTGHVPEEIGSLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDGGGLGRLSSLEILRLDGNTFHGIVPAALGNLARLEVLHLQLDRLWALAVRDNNLSGRVPESLGCLTGL--------------RSLRLEENPSLRGPIPDQLASGVNCNVRADQPVLEDTEAAMLGSKLDEWFLMPRKAR 647
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig657.15274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPI3_ECTSI4.400e-4574.02Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JTB3_9PHAE1.890e-3952.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 214..227
score: 59.25
coord: 105..118
score: 48.56
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 185..359
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 51..255
coord: 185..359
coord: 2..147
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 51..255
coord: 2..147
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 4..147
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 192..358
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 214..238
e-value: 0.12
score: 21.5
coord: 266..289
e-value: 130.0
score: 4.3
coord: 290..314
e-value: 90.0
score: 5.4
coord: 54..77
e-value: 64.0
score: 6.7
coord: 102..126
e-value: 28.0
score: 9.6
coord: 78..101
e-value: 28.0
score: 9.6
coord: 6..30
e-value: 140.0
score: 3.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 255..375
e-value: 3.6E-25
score: 90.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..254
e-value: 8.7E-63
score: 214.5
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 86..140
e-value: 1.1E-6
score: 28.3
coord: 269..327
e-value: 2.0E-6
score: 27.5
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 216..238
e-value: 0.052
score: 14.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig657contigL-elsbetiae_contig657:26445..30026 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig657.15274.1mRNA_L-elsbetiae_contig657.15274.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig657 26383..32362 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig657.15274.1 ID=prot_L-elsbetiae_contig657.15274.1|Name=mRNA_L-elsbetiae_contig657.15274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=434bp
MKIGTLTILRSLNLGMNKLNGAIPRELASLHLLVELRVRENRLAGKIPPL
LSNMRSLQVLDLTSNLLQGHIPESLGGMTDLRELWLGGNQLVGVIPETLE
KLDDLQSLDLSRNKFAGTIKPRTFSALSSSLVYLNLSDNAFEGALPLAAL
SPHSAGETSASSRGSGFVSTSEGQTSRGASRIEIAAGMASSLLSYVNLSK
NKFTGRVSKEIGELTSLETLDLSHNKLEGEVPPDIGNCVALRVLSFSRCG
LSGRLDGINGEELGRLHLLETLRLDANTFEGSVPASFGNLTRLEVLQLQC
NCFNGQLPSTLGRLDRLWAFTVRDNNLSGRVPDSLSRLTELRSLRLEENP
SLRGPIPAPLASRQGCAVRADELVMEDTEATMLGSKLGGWFLMPRKARQQ
AKQHFFLVTPPCELAWFDTCPPWCHTSATSSPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt