mRNA_L-elsbetiae_contig6565.15267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6565.15267.1
Unique NamemRNA_L-elsbetiae_contig6565.15267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6565.15267.1 vs. uniprot
Match: A0A6H5JKE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE3_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.880e-66
Identity = 109/161 (67.70%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:   10 GDQGLEFKVLKHRQTLGGGVGPGVAEIFEKVKLGDDATPAHVLDHLRKRAAGAGGGGDGVSAELEALMSEPVEVSVTKAVRKMDVSTGDNKSSLEVTEVSVSFPGMPGAYPRDWVTFCAEGSVESIEAFLGGAGKPLVRLLSLREALQVGYPQFVQMISTE 492
            G  GLEFK LK RQTLGGGVGPG AE F+K+KLGD ATP  V++HLRK+A   G G   VS  LEALMS P+EV+V K+VRK  V+T + K+S EVTEVSVSFP MP  YP++W TFC EG + SIEAFLG  GKPLV LLSLR ALQVGYP FVQMIST+
Sbjct:   55 GGGGLEFKALKQRQTLGGGVGPGAAETFQKIKLGDGATPTEVIEHLRKQA---GKGEGAVSEGLEALMSTPLEVTVKKSVRKTTVTTREGKASFEVTEVSVSFPEMPETYPKNWTTFCVEGKMTSIEAFLGSKGKPLVALLSLRGALQVGYPHFVQMISTQ 212
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BLAST of mRNA_L-elsbetiae_contig6565.15267.1 vs. uniprot
Match: D7FLJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.370e-32
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:   10 GDQGLEFKVLKHRQTLGGGVGPGVAEIFEKVKLGDDATPAHVLDHLRKRAAGAGGGGDGVSAELEALMSEPVEVSVTKAVRKMDVSTGDNKSSLEVT 300
            G  GLEFK LK RQTLGGGVGPG AE F+KV LGDDATPA V++HLRK A   G G  GVS ELEALMS P+EV+V K+VRK  V+ G+ K+S EVT
Sbjct:   55 GGGGLEFKALKQRQTLGGGVGPGAAETFQKVMLGDDATPAEVIEHLRKEA---GEGEGGVSEELEALMSTPLEVAVKKSVRKTTVTAGERKASFEVT 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6565.15267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKE3_9PHAE1.880e-6667.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ5_ECTSI2.370e-3267.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6565contigL-elsbetiae_contig6565:116..4164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000950.1
Exons3
Model size551
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6565.15267.1prot_L-elsbetiae_contig6565.15267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6565 172..1877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.87596-UTR-L-elsbetiae_contig6565:115..1711622816724.87596-UTR-L-elsbetiae_contig6565:115..171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6565 116..171 -
1691683767.1715229-UTR-L-elsbetiae_contig6565:115..1711691683767.1715229-UTR-L-elsbetiae_contig6565:115..171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6565 116..171 -
1622816724.9082382-UTR-L-elsbetiae_contig6565:1877..19881622816724.9082382-UTR-L-elsbetiae_contig6565:1877..1988Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6565 1878..1988 -
1691683767.2032638-UTR-L-elsbetiae_contig6565:1877..19881691683767.2032638-UTR-L-elsbetiae_contig6565:1877..1988Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6565 1878..1988 -
1622816724.9257994-UTR-L-elsbetiae_contig6565:4065..41641622816724.9257994-UTR-L-elsbetiae_contig6565:4065..4164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6565 4066..4164 -
1691683767.2172112-UTR-L-elsbetiae_contig6565:4065..41641691683767.2172112-UTR-L-elsbetiae_contig6565:4065..4164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6565 4066..4164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.8869407-CDS-L-elsbetiae_contig6565:171..3651622816724.8869407-CDS-L-elsbetiae_contig6565:171..365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6565 172..365 -
1691683767.181671-CDS-L-elsbetiae_contig6565:171..3651691683767.181671-CDS-L-elsbetiae_contig6565:171..365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6565 172..365 -
1622816724.8973665-CDS-L-elsbetiae_contig6565:1786..18771622816724.8973665-CDS-L-elsbetiae_contig6565:1786..1877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6565 1787..1877 -
1691683767.1924455-CDS-L-elsbetiae_contig6565:1786..18771691683767.1924455-CDS-L-elsbetiae_contig6565:1786..1877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6565 1787..1877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6565.15267.1

>prot_L-elsbetiae_contig6565.15267.1 ID=prot_L-elsbetiae_contig6565.15267.1|Name=mRNA_L-elsbetiae_contig6565.15267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MSEPVEVSVTKAVRKMDVSTGDNKSSLEVTEVSVSFPGMPGAYPRDWVTF
CAEGSVESIEAFLGGAGKPLVRLLSLREALQVGYPQFVQMISTE*
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mRNA from alignment at L-elsbetiae_contig6565:116..4164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6565.15267.1 ID=mRNA_L-elsbetiae_contig6565.15267.1|Name=mRNA_L-elsbetiae_contig6565.15267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4049bp|location=Sequence derived from alignment at L-elsbetiae_contig6565:116..4164- (Laminarionema elsbetiae ELsaHSoW15)
CAAAATCAGGGGGACCAAGGACTGGAGTTCAAAGTCCTGAAGCACCGCCA
GACGCTGGGCGGCGGGGTCGGCCCCGGAGTGGCGGAGATCTTCGAAAAGG
TATGTATGTACTGTATCCTACACTAATTTAGGTCTTCGAAACGCCACAGC
AGTATATAGCCCCCTTTTTAACCACGACCCGAACTCTGAGTAGGATGGCA
CAGCAGCGGCACGGGTCTCTCCGAAGAAACAGGCTATATATTGGTCTATA
TGTATACTTCATATACTTCGTATATAGCCTCATAACCAAAATGAGGCGAG
CAGCGCCTTCGTAGAGAGATACCATAATGATGCGAAGGTTCGCACCCCCG
TTTTAGCATTTTTCTAAAGCGTATTTCGTCTCGTCGGGGGCTTTCCAGAG
AGGTAACAGTTAGTGTTCGCACCCTCCTGGTTGTGGAGAAATACACTATA
TAGAAAAACGCCAACACGGGGGTGCGAAACTTCGCATAATTACGGTATTC
CACGAAAGCAGATGTAGGTGACACAAGATACCACCCCCCCCGCGCGCGCG
CCCTCAACAGATTTTCTAAGCTCTATTACTCCGTCACGAAGAGGGTGCCG
GCACCAAACGACACATTGTCGGAGAGCCCTCGACTAGATGTTTCCAACGC
CGCCCCTTTTCGGCACTGTCACTCTCCTTGCTGGAGAGGAATCGAGCTTT
GAAAGTCTGTCCAAGGGGGTCCAGGGGGGGTTGGTATATTGTGTTACCTA
TGCATGTAGGCAGGCTCGGAACCAAATTAGGCGAGCAGCGCCTTGTATCT
AGAGGAATGTTAAATGTTTCGAAAACACGTGTAGGGGCATGGGTCCAGCC
TCGGCAGGCGATGGGGGGGTGGGCGCGATACGAAGAAAAGCACGTCCCGT
GCAAGTTGACAGCGGTCGGTAGGCGTCAGTGTCGTGCGCAGAAGAAGCAC
CTTCGGCAGGCAGCCTAGACAAGACTTTTTCAGCTTTGGACCTCTTACCA
TTGCGCATTAGAAGGTTCATCATTTTAGTTACACAAGTGGATCACTTTTA
ATTCTCAAAGAATACTCGTTATTATTATCTTTATGTTCTTTGAATAACAT
CCTTCATCTATTTTTTTTGTACCATATTTAGAACGAGAAGTTTTATGACC
CGGTAGACCTTCTAAATCAAGCTTATTACGTATTAAACGGAAAATAATCA
CCTACGGCAGGCAGCCTCAGCCAGCCCTCGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGTGCTCTGCATGTTCGGGACGCTCGTATTACAGTAGG
TGACGTAAGATAAGACACCCCCTGGACCGAGATTGAAAGCTTGGTTACTC
CGCAACGAATACGATTCTAACCACAAACGCCACATTTTCGGACAGATCTC
GACGAGATCTTTCTAACGCCGCCCTTTTCGGGACTGACGCTCTGCTTGCT
GTGGAGTACTTGAGCTTTGAAAATCGGTCCAGGAGGTGTCTTGTCGTATG
TCACCTACGGTAAATGGGTTTGTCCTTTCAGGGGTGTGGTCCATGCGGTG
TTCGGAGAGACGTACTGCTGTTACTACTGCTAAAAGATAGTCCGATGTTC
GACTACTGTAGGAAGTCAATGACCCATTGAGTTTGATGCTTTGTGTAGCC
CAGAGCCAGGCGGGTCTCTTGCCCTGCCAGCCATGGTCCCAAGCAACCGC
GTCAAACTCGTCGACGGCGCCTGAGCCTCTGCCTCTGCCCCTGCGCCTCG
CCATATGTAACCCCGACCTAGAAGTCCAAAAAGGCAGGGGGGAGGCGACG
CGGTGTCCATCCCCATTCGCACCCCCCCCCTGTAGCTGTAGCCGCCGACC
CAGAGGGCGAGCAGGCCTGACCCTGCCCCATTGCCCCCTCCCCGGGCCCG
TAACCCCCGCCCGTCAACAGCAGGCCTACGGAGGAGTTTCGTCTTCAGCT
ACTTCTATATAACATATGAGATAAAAGTATGAGAACCGGTAAAAGGGGGG
TCGGTGGTTGGGGTTAGGGTTAGGCGCTGAGCTACCGACTCCGCCTCTGC
CTCCGGCTCCACCCCCAGCTCTTTCCACCCACCTCAGAGCTCGAGCTCGA
GCTCGCATAGGTACCCGCGCCTTCACTCCTCCGCTCTGATTACTGTTGCT
GTCGTTGCGCCTGCGCCTGCGCACAGGTCAAGCTCGGTGACGACGCCACT
CCGGCGCACGTCCTCGACCACCTGCGCAAGAGGGCAGCGGGGGCTGGTGG
GGGCGGGGACGGGGTCTCGGCGGAGCTGGAGGCCCTGATGAGCGAGCCGG
TTGAGGTCAGCGTCACGAAGGCGGTGCGGAAGATGGATGTCTCGACAGGG
GACAACAAGTCGAGCTTGGAGGTCACAGGTGCGGAGGGGGTGCTGCGCGT
TTCTGTTTGTGTGTGTGTGGGGTCTTGTAACCGAGGCGGCTTGGGGGTCA
CGCAGGAGCGACTTGTTTAGGGGTCGGGCTTTTTGGGCCCTGACCCTAAC
CCCAACCACCGACCCCCCTTTCCCGGTTTCCATACTCTATCTCATATGTT
AGCTGACGACGAAAACCCTGCGTAGACTACTGAGAGAACATGGCACACCG
CAAGTGCTTTCTTTTGTCCCGTGTCGCATGAGAGAGCTGAGGTCATACCG
TAATAAATATGTGTAACACGTATCCCTTGAGAACGCCCTGGGGTGTATGT
AAACATTCTTCAAAGAAGCTGATTTTCTCTCGACAACCGAGAGGGTGCGA
TCGACGAGAATGTTAATTTTGGAAAGATCTCGACGAGATCCTTCCAAGGG
CACATCGCTCCTCGACGATAGCAACCCCACCCACCTGCGGAGAGGATCGG
CTCTGAAATTTGTTTACACCCCGGGGCGTTCTCAAGGGATGCGTATTACG
GTACACCTCTCGGATCTCCCCCCGAGTACGCAACGGTTTTTCGGGGGTGG
CAGAAGGAGGAGTAAGATCAGTGGTCTGCTATAGCACATCAGTGCCTAAA
GCGCGATGATGGCTGAAGGACCGAGGGATTTTGCACACCGCCTCCTCCCC
CTCCCCCCTAGTTGCACGTCTCCCCCCTGAGCATACACTCCCGTTGGGGG
CAAGAGAGCGGTGATCGCTACATACCTTGCGGACAAGACTTTGTGGACTC
TTCTGGTGTGCCCCCCCCTGTAGCCTTCACGGATTTTACTGGAAGAAATC
TAATAGGATATAAAGTATGGAAACGGCTCATGGGGGATCGGTTTGGGGTT
AGGGTTACGGAACCCCTGTCCGTGAATGCCACCTGACTGGTCGTTAGAGT
GATGTCATCAAATGACCCAACCAGAATCTACGTCATCCTGGCCGGGGTAT
CACAGATTAGAGTCAGCACCGTTCCTTGGATTCCACGGCTTCAGCACCCG
CTCTATCCTATGACTCGCCCCACGTTACTTCTCGTTTGCCCGTTCCGTCC
CTCCTCTCGCCGTCGAGAGTTGAGGCCCGGTGTGTACTCCACACCGCACA
CACATGAGAACCAAGCCTGTAGAATCTGAGAGAGACTGACCCCTCTTTTA
TCTCTATTATTTCCCATATAAAGAGGAATTATTGGCGGAGACGGTCCGCC
TCCCCCCCCCCCACTGCGCTTCACCTGAATCCGCAGGGGTCGAGAGGGGA
AATGAAGGCCACGTCTCGCGAGGTCGCGCCGCTTTGCTTTCCCGTACACC
AGCCTACCCATTCCGACGCTCAGAGCCCCACCCACTCACCCTTGCTCGTT
TTTTCCACGCACCTGTAAACCGCTAATGACAACGCGTGTGCCTCCGCAGA
GGTTTCCGTGAGCTTCCCCGGCATGCCGGGGGCCTACCCGAGGGACTGGG
TCACGTTTTGCGCGGAGGGGAGCGTGGAGAGCATCGAGGCGTTTCTCGGC
GGGGCGGGGAAGCCCCTGGTGCGGCTGCTGTCCCTCAGGGAGGCGTTGCA
AGTGGGGTACCCGCAGTTCGTGCAGATGATCTCGACGGAATGAGCCCCTA
TGTGGCGAATAACGCTTTGTTTTGAAGCGCAGGGGGGGATGGCGTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6565:116..4164-

>mRNA_L-elsbetiae_contig6565.15267.1 ID=mRNA_L-elsbetiae_contig6565.15267.1|Name=mRNA_L-elsbetiae_contig6565.15267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig6565:116..4164- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGAGCCGGTTGAGGTCAGCGTCACGAAGGCGGTGCGGAAGATGGA
TGTCTCGACAGGGGACAACAAGTCGAGCTTGGAGGTCACAGATGAGCGAG
CCGGTTGAGGTCAGCGTCACGAAGGCGGTGCGGAAGATGGATGTCTCGAC
AGGGGACAACAAGTCGAGCTTGGAGGTCACAGAGGTTTCCGTGAGCTTCC
CCGGCATGCCGGGGGCCTACCCGAGGGACTGGGTCACGTTTTGCGCGGAG
GGGAGCGTGGAGAGCATCGAGGCGTTTCTCGGCGGGGCGGGGAAGCCCCT
GGTGCGGCTGCTGTCCCTCAGGGAGGCGTTGCAAGTGGGGTACCCGCAGT
TCGTGCAGATGATCTCGACGGAATGAAGGTTTCCGTGAGCTTCCCCGGCA
TGCCGGGGGCCTACCCGAGGGACTGGGTCACGTTTTGCGCGGAGGGGAGC
GTGGAGAGCATCGAGGCGTTTCTCGGCGGGGCGGGGAAGCCCCTGGTGCG
GCTGCTGTCCCTCAGGGAGGCGTTGCAAGTGGGGTACCCGCAGTTCGTGC
AGATGATCTCGACGGAATGA
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