mRNA_L-elsbetiae_contig656.15257.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig656.15257.1
Unique NamemRNA_L-elsbetiae_contig656.15257.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 9.690e-33
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:  121 QRYSPFVLQNRTGLKLEFWAHQDKVDSVARFGKRGTVVGGMSDQPFSTSVSSADGQSGGGRTRNRRHADWLLSLRLVT 354
            QRYSPF+LQNRTGLKLEFWAHQDKVDSV+RFGKRGTVVGGMSDQPFSTS S+ +GQS     RNRRHA WLLS+RLVT
Sbjct:   77 QRYSPFLLQNRTGLKLEFWAHQDKVDSVSRFGKRGTVVGGMSDQPFSTS-STTEGQSQQPGRRNRRHASWLLSVRLVT 153
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BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.300e-8
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:  121 QRYSPFVLQNRTGLKLEFWAHQDKVDSVARFGKRGTVVGGMSDQPFSTSVSSADG 285
            +RY+PF+L+NRTGL LEFW H+ +V  +AR    G VVGG +D  F+   S   G
Sbjct: 3739 ERYTPFLLRNRTGLALEFWTHEARVSRLARIRGAGCVVGGAADYAFAIGWSGGQG 3793
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BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 7.150e-5
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  241 MSDQPFSTSVSSADGQSGGGRTRNRRHADWLLSLRLVT 354
            MSDQPFSTS SSA+GQ      RNRRHA WLLS+RLVT
Sbjct:    1 MSDQPFSTS-SSAEGQLQQPGRRNRRHASWLLSVRLVT 37
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF6_ECTSI9.690e-3383.33SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836C849_9STRA6.300e-849.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L5D8_9PHAE7.150e-573.68PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig656contigL-elsbetiae_contig656:19486..20076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.0901217-CDS-L-elsbetiae_contig656:19485..196851622816724.0901217-CDS-L-elsbetiae_contig656:19485..19685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 19486..19685 +
1691683766.604934-CDS-L-elsbetiae_contig656:19485..196851691683766.604934-CDS-L-elsbetiae_contig656:19485..19685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 19486..19685 +
1622816724.1009028-CDS-L-elsbetiae_contig656:19892..200761622816724.1009028-CDS-L-elsbetiae_contig656:19892..20076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 19893..20076 +
1691683766.6160939-CDS-L-elsbetiae_contig656:19892..200761691683766.6160939-CDS-L-elsbetiae_contig656:19892..20076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 19893..20076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig656.15257.1prot_L-elsbetiae_contig656.15257.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig656 19486..20076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig656.15257.1

>prot_L-elsbetiae_contig656.15257.1 ID=prot_L-elsbetiae_contig656.15257.1|Name=mRNA_L-elsbetiae_contig656.15257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
AAAAASASVGDAEIIESTAQQQQQQQQQQQQQQQQQQQQHQRYSPFVLQN
RTGLKLEFWAHQDKVDSVARFGKRGTVVGGMSDQPFSTSVSSADGQSGGG
RTRNRRHADWLLSLRLVTDATADKLLPD
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mRNA from alignment at L-elsbetiae_contig656:19486..20076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig656.15257.1 ID=mRNA_L-elsbetiae_contig656.15257.1|Name=mRNA_L-elsbetiae_contig656.15257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=591bp|location=Sequence derived from alignment at L-elsbetiae_contig656:19486..20076+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCTGCTGCTTCAGCCAGTGTGGGTGATGCCGAGATTATTGAATC
CACAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGC
AGCAACAGCAGCAACAGCATCAGCGGTACTCCCCGTTCGTGCTGCAGAAC
CGGACCGGCCTGAAGCTGGAATTCTGGGCACATCAGGACAAGGTCGACAG
GTGGGGCGCTCGGCCGCAGGTCTCACCGCTGCAACTATTATAGCGCTCGG
CTTGAACGCGAGCAACCAAATGCCCCGCGGTCTGTGTGTGTGTGGCATCT
AAATGTAGGCATGCTTCCACATCCTTTCGACCACCATTTTTCATAACTCG
TACAATACTGTATATTTTTTTCATTTCAGGTCCCGTTCTTTTTCTTTTTT
TTTTCAGCGTGGCTCGGTTCGGCAAGCGGGGCACCGTGGTGGGAGGGATG
TCCGACCAGCCTTTCAGCACGTCCGTCAGCTCGGCGGACGGGCAATCCGG
CGGCGGCAGGACAAGGAACAGGCGCCACGCTGATTGGCTGCTGTCTCTCC
GCCTCGTGACAGATGCAACAGCCGATAAACTACTTCCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig656:19486..20076+

>mRNA_L-elsbetiae_contig656.15257.1 ID=mRNA_L-elsbetiae_contig656.15257.1|Name=mRNA_L-elsbetiae_contig656.15257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig656:19486..20076+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCTGCTGCTTCAGCCAGTGTGGGTGATGCCGAGATTATTGAATC
CACAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGC
AGCAACAGCAGCAACAGCATCAGCGGTACTCCCCGTTCGTGCTGCAGAAC
CGGACCGGCCTGAAGCTGGAATTCTGGGCACATCAGGACAAGGTCGACAG
GCCGCCGCTGCTGCTTCAGCCAGTGTGGGTGATGCCGAGATTATTGAATC
CACAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGC
AGCAACAGCAGCAACAGCATCAGCGGTACTCCCCGTTCGTGCTGCAGAAC
CGGACCGGCCTGAAGCTGGAATTCTGGGCACATCAGGACAAGGTCGACAG
CGTGGCTCGGTTCGGCAAGCGGGGCACCGTGGTGGGAGGGATGTCCGACC
AGCCTTTCAGCACGTCCGTCAGCTCGGCGGACGGGCAATCCGGCGGCGGC
AGGACAAGGAACAGGCGCCACGCTGATTGGCTGCTGTCTCTCCGCCTCGT
GACAGATGCAACAGCCGATAAACTACTTCCCGACCGTGGCTCGGTTCGGC
AAGCGGGGCACCGTGGTGGGAGGGATGTCCGACCAGCCTTTCAGCACGTC
CGTCAGCTCGGCGGACGGGCAATCCGGCGGCGGCAGGACAAGGAACAGGC
GCCACGCTGATTGGCTGCTGTCTCTCCGCCTCGTGACAGATGCAACAGCC
GATAAACTACTTCCCGAC
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