prot_L-elsbetiae_contig656.15257.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig656.15257.1
Unique Nameprot_L-elsbetiae_contig656.15257.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length128
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 9.690e-33
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 0 
Query:   41 QRYSPFVLQNRTGLKLEFWAHQDKVDSVARFGKRGTVVGGMSDQPFSTSVSSADGQSGGGRTRNRRHADWLLSLRLVT 118
            QRYSPF+LQNRTGLKLEFWAHQDKVDSV+RFGKRGTVVGGMSDQPFSTS S+ +GQS     RNRRHA WLLS+RLVT
Sbjct:   77 QRYSPFLLQNRTGLKLEFWAHQDKVDSVSRFGKRGTVVGGMSDQPFSTS-STTEGQSQQPGRRNRRHASWLLSVRLVT 153
[Close]
BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.300e-8
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0 
Query:   41 QRYSPFVLQNRTGLKLEFWAHQDKVDSVARFGKRGTVVGGMSDQPFSTSVSSADG 95
            +RY+PF+L+NRTGL LEFW H+ +V  +AR    G VVGG +D  F+   S   G
Sbjct: 3739 ERYTPFLLRNRTGLALEFWTHEARVSRLARIRGAGCVVGGAADYAFAIGWSGGQG 3793
[Close]
BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 7.150e-5
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:   81 MSDQPFSTSVSSADGQSGGGRTRNRRHADWLLSLRLVT 118
            MSDQPFSTS SSA+GQ      RNRRHA WLLS+RLVT
Sbjct:    1 MSDQPFSTS-SSAEGQLQQPGRRNRRHASWLLSVRLVT 37
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF6_ECTSI9.690e-3383.33SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836C849_9STRA6.300e-849.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L5D8_9PHAE7.150e-573.68PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig656contigL-elsbetiae_contig656:19486..20076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig656.15257.1mRNA_L-elsbetiae_contig656.15257.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig656 19486..20076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig656.15257.1 ID=prot_L-elsbetiae_contig656.15257.1|Name=mRNA_L-elsbetiae_contig656.15257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
AAAAASASVGDAEIIESTAQQQQQQQQQQQQQQQQQQQQHQRYSPFVLQN
RTGLKLEFWAHQDKVDSVARFGKRGTVVGGMSDQPFSTSVSSADGQSGGG
RTRNRRHADWLLSLRLVTDATADKLLPD
back to top