mRNA_L-elsbetiae_contig6499.15178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6499.15178.1
Unique NamemRNA_L-elsbetiae_contig6499.15178.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A6H5L234_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L234_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.590e-47
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAK--RQGGAGHVLVGVEQTNNS 276
            RQPV+MCASLVDKVPN+AGLARTSEIFAATKLVVPD RV+K+PAF+KISTGAEQWLP+EEVGEEQLVAWLRR K  R GG GHVLVG+EQTNNS
Sbjct:  335 RQPVIMCASLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKSPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNS 428          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A1E7EQ52_9STRA (tRNA/rRNA methyltransferase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQ52_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.360e-26
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            +Q +++CASLVDK+PNLAGLARTSEIFAA  LV+PD  V K   F  IS GA  W+ IEEV  EQL++WL + K +G   + +VG+EQT++S
Sbjct:    1 KQELIICASLVDKIPNLAGLARTSEIFAAKSLVIPDLSVTKMDNFKSISVGAADWINIEEVKIEQLLSWLLKKKAEG---YWIVGLEQTSSS 89          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S0GN51_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GN51_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.010e-25
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            +Q +++CASL+DK+PNLAGLART+EIFAA KL+VPD RV K   F  IS GA +W+ IEE  E  L+ WL + K +    + +VG+EQT++S
Sbjct:    5 KQDLIVCASLIDKIPNLAGLARTAEIFAAQKLIVPDLRVQKMDNFKSISVGANEWITIEECPERDLLDWLLKRKEEC---YTIVGIEQTSSS 93          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A1E7FTV0_9STRA (Alpha/beta knot n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTV0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.110e-25
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            +Q +++CASLVDK+PNL GLARTSEIFAA  L+VPD  V K   F  IS GA  W+ I+EV EE L+ WL + K +G   + +VG+EQT++S
Sbjct:   32 KQQLIVCASLVDKIPNLGGLARTSEIFAAQSLIVPDLSVTKMDIFQSISVGAADWIDIQEVKEEALLLWLLQKKTEG---YWIVGLEQTSSS 120          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S4N1C3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1C3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.370e-24
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            RQ +++CASL+DKVPNLAGLART+EIFAA +LVVPD  V K   F  IS  AE+W+ IEE  E  L++WL + K++G   + +VGVEQT++S
Sbjct: 1407 RQGLIVCASLIDKVPNLAGLARTAEIFAADRLVVPDQSVRKMDNFKSISVSAEEWIRIEECKERDLLSWLNKRKQEG---YTIVGVEQTSSS 1495          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7R9V1J9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1J9_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 4.310e-24
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            RQ +V+CASL+DK+PNLAGLART E+F A+ L VPD RV  +PAF+ IS  AEQW+ + EV E  L+ WL R + +G   + L+G+EQT  S
Sbjct:   56 RQGIVICASLIDKLPNLAGLARTCEVFRASALAVPDLRVASDPAFASISVTAEQWVNMVEVKEGALLPWLLRKQAEG---YALLGLEQTAES 144          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: W7U0J8_9STRA (Rrna methylase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0J8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 8.670e-24
Identity = 50/91 (54.95%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    4 QPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            Q  VMCASL+++VPNLAGLART EIFA +KLV+PD R+L++P F KIS+ A +W+ IEEV E +  A+++R K++G   + +VG+EQT++S
Sbjct:  659 QEFVMCASLLERVPNLAGLARTCEIFAVSKLVIPDMRLLRDPLFEKISSSAGRWIKIEEVHEGRTRAYIQRCKQEG---YTIVGLEQTDDS 746          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S1ZWU9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWU9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.520e-23
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            +Q +V+CA+LVDKVPNLAGLART+EIFAA +LV+PD  V K   F  +S  A  W+ IEE  E+ L++WL+  +  G   + +VG+EQT++S
Sbjct:   39 KQELVICATLVDKVPNLAGLARTAEIFAADRLVIPDTSVCKMDIFKSVSVSAGDWITIEECKEDGLLSWLKHQRENG---YKIVGLEQTSSS 127          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A2D4CC22_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC22_PYTIN)

HSP 1 Score: 102 bits (254), Expect = 2.280e-23
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            RQPV++CASLVDKVPNLAGLART EIF A++LVVP  RV  + AF  IS  A +W+P+EEV  E LVA L+R K  G     +V VEQT +S
Sbjct: 3934 RQPVILCASLVDKVPNLAGLARTCEIFNASRLVVPSLRVCDDEAFETISVTANKWIPMEEVRAEHLVAALQRWKSDG---FTIVAVEQTASS 4022          
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S2RYK0_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYK0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.050e-23
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    4 QPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276
            Q +++CASL+DKVPNLAGLART+EIFAA +L++PD  V K   F  IS GA +W+ IEE  E+ L++WL + K +G   + +VG+EQT++S
Sbjct: 1006 QDLIVCASLIDKVPNLAGLARTAEIFAADRLIIPDVGVCKMDNFKSISVGAGEWIKIEECKEKDLLSWLNQRKEEG---YNIVGIEQTSSS 1093          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L234_9PHAE3.590e-4786.17SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A1E7EQ52_9STRA3.360e-2656.52tRNA/rRNA methyltransferase (Fragment) n=1 Tax=Fra... [more]
A0A7S0GN51_9STRA1.010e-2553.26Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FTV0_9STRA7.110e-2554.35Alpha/beta knot n=1 Tax=Fragilariopsis cylindrus C... [more]
A0A7S4N1C3_9STRA1.370e-2456.52Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9V1J9_9CHLO4.310e-2454.35Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
W7U0J8_9STRA8.670e-2454.95Rrna methylase family n=1 Tax=Nannochloropsis gadi... [more]
A0A7S1ZWU9_9STRA1.520e-2351.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2D4CC22_PYTIN2.280e-2359.78DNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A7S2RYK0_9STRA3.050e-2352.75Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6499contigL-elsbetiae_contig6499:5358..6419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog35128.Thaps22808
KEGG koko:K15333
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SpoU rRNA Methylase family
EggNOG OGs2XDAQ@2836,COG0566@1,KOG0839@2759
EC2.1.1.34
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03036
Exons2
Model size276
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6499.15178.1prot_L-elsbetiae_contig6499.15178.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6499 5373..6419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.9698625-UTR-L-elsbetiae_contig6499:5357..53721622816716.9698625-UTR-L-elsbetiae_contig6499:5357..5372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6499 5358..5372 +
1691683761.728789-UTR-L-elsbetiae_contig6499:5357..53721691683761.728789-UTR-L-elsbetiae_contig6499:5357..5372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6499 5358..5372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.9827733-CDS-L-elsbetiae_contig6499:5372..53961622816716.9827733-CDS-L-elsbetiae_contig6499:5372..5396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6499 5373..5396 +
1691683761.7390954-CDS-L-elsbetiae_contig6499:5372..53961691683761.7390954-CDS-L-elsbetiae_contig6499:5372..5396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6499 5373..5396 +
1622816716.995787-CDS-L-elsbetiae_contig6499:6182..64191622816716.995787-CDS-L-elsbetiae_contig6499:6182..6419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6499 6183..6419 +
1691683761.750231-CDS-L-elsbetiae_contig6499:6182..64191691683761.750231-CDS-L-elsbetiae_contig6499:6182..6419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6499 6183..6419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6499.15178.1

>prot_L-elsbetiae_contig6499.15178.1 ID=prot_L-elsbetiae_contig6499.15178.1|Name=mRNA_L-elsbetiae_contig6499.15178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
MCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQW
LPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS
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mRNA from alignment at L-elsbetiae_contig6499:5358..6419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6499.15178.1 ID=mRNA_L-elsbetiae_contig6499.15178.1|Name=mRNA_L-elsbetiae_contig6499.15178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig6499:5358..6419+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCAGCCCGTGGTCATGTGCGCCTCTCTCGTCGACAAGGTGATCAGCTG TGCAATGTGTGTTTTCAGCAGGCCTGTCTTGTCTATCTGTGCTGCCTGTC CGTCTCCCGTCTCTCTGCTCCCCGCTCTCCAAGGCCTGTGTTTTTTCTCC CCTCTAGCTTCTTCTCGTTTCGTTGTCTCCCTTGGCGTGCCGTACCCGTA GCGCTCAAGGCACGCTTGGATGAGGTATATATTGTGCGGTACCGCCTCTG CGGCCTGCATAATAACACCCACGTACAGGGGAGCTGTTCACCCAGACATA TCGCGGGCTTGGTGCCATACAATGCTGAACTAAAAACCTTGAGGGTCCCC GAGAATACTGAGCACTGCTGTGTGCGTACCATGCAACAAACCAGGGAAGG GGAATGCACCGATGTCGTATCCGGTTGATGCGGTACCCCCCACCTTCTCA CGAAACGATCCAGTGTTCCGGTCGTATTTCCTCACATTGGATTTTTCTGC GGCTCGAATGGTGTGCCGGGTGTGTCTTGGTGGCCGACACAAGTTTGATA TGAGCTGCCGAAACTCCGGGCGTTCATCCGATCCCACCCCCGTTTGTCCG TGTGTACACACACACACGCGCGCGCGCACACACGAAACGTCTGCACATGA TGCTGCAACTTCGAAGCTCGCCCTTGTGCGGCGGTGGTCTTGTAAACACC GAACCTTGCTGCAATCGCCGTTTCAGCCGACACACAGACAGAGTGGGTGA ATGCCCCGAGCCGCGCCGCACCGCACCGCACCGCACCCAAACACCTGCAT TGCACCCCCTATTTCTGAGAACCAGGTTCCGAACCTTGCGGGCCTGGCGA GAACCAGCGAGATATTCGCCGCCACGAAGCTGGTCGTCCCGGACGCGCGG GTCCTCAAGAACCCTGCCTTCTCCAAGATCTCGACGGGGGCCGAGCAGTG GCTGCCCATCGAGGAGGTGGGCGAGGAGCAGCTCGTGGCGTGGCTCAGGA GGGCCAAGAGGCAGGGCGGGGCGGGGCACGTGCTCGTCGGCGTGGAACAG ACGAACAACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6499:5358..6419+

>mRNA_L-elsbetiae_contig6499.15178.1 ID=mRNA_L-elsbetiae_contig6499.15178.1|Name=mRNA_L-elsbetiae_contig6499.15178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig6499:5358..6419+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGCCTCTCTCGTCGACAAGATGTGCGCCTCTCTCGTCGACAAGGT
TCCGAACCTTGCGGGCCTGGCGAGAACCAGCGAGATATTCGCCGCCACGA
AGCTGGTCGTCCCGGACGCGCGGGTCCTCAAGAACCCTGCCTTCTCCAAG
ATCTCGACGGGGGCCGAGCAGTGGCTGCCCATCGAGGAGGTGGGCGAGGA
GCAGCTCGTGGCGTGGCTCAGGAGGGCCAAGAGGCAGGGCGGGGCGGGGC
ACGTGCTCGTCGGCGTGGAACAGACGAACAACAGCGTTCCGAACCTTGCG
GGCCTGGCGAGAACCAGCGAGATATTCGCCGCCACGAAGCTGGTCGTCCC
GGACGCGCGGGTCCTCAAGAACCCTGCCTTCTCCAAGATCTCGACGGGGG
CCGAGCAGTGGCTGCCCATCGAGGAGGTGGGCGAGGAGCAGCTCGTGGCG
TGGCTCAGGAGGGCCAAGAGGCAGGGCGGGGCGGGGCACGTGCTCGTCGG
CGTGGAACAGACGAACAACAGC
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