mRNA_L-elsbetiae_contig6499.15178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A6H5L234_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L234_9PHAE) HSP 1 Score: 166 bits (419), Expect = 3.590e-47 Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAK--RQGGAGHVLVGVEQTNNS 276 RQPV+MCASLVDKVPN+AGLARTSEIFAATKLVVPD RV+K+PAF+KISTGAEQWLP+EEVGEEQLVAWLRR K R GG GHVLVG+EQTNNS Sbjct: 335 RQPVIMCASLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKSPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNS 428
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A1E7EQ52_9STRA (tRNA/rRNA methyltransferase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQ52_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.360e-26 Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 +Q +++CASLVDK+PNLAGLARTSEIFAA LV+PD V K F IS GA W+ IEEV EQL++WL + K +G + +VG+EQT++S Sbjct: 1 KQELIICASLVDKIPNLAGLARTSEIFAAKSLVIPDLSVTKMDNFKSISVGAADWINIEEVKIEQLLSWLLKKKAEG---YWIVGLEQTSSS 89
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S0GN51_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GN51_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.010e-25 Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 +Q +++CASL+DK+PNLAGLART+EIFAA KL+VPD RV K F IS GA +W+ IEE E L+ WL + K + + +VG+EQT++S Sbjct: 5 KQDLIVCASLIDKIPNLAGLARTAEIFAAQKLIVPDLRVQKMDNFKSISVGANEWITIEECPERDLLDWLLKRKEEC---YTIVGIEQTSSS 93
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A1E7FTV0_9STRA (Alpha/beta knot n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTV0_9STRA) HSP 1 Score: 101 bits (251), Expect = 7.110e-25 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 +Q +++CASLVDK+PNL GLARTSEIFAA L+VPD V K F IS GA W+ I+EV EE L+ WL + K +G + +VG+EQT++S Sbjct: 32 KQQLIVCASLVDKIPNLGGLARTSEIFAAQSLIVPDLSVTKMDIFQSISVGAADWIDIQEVKEEALLLWLLQKKTEG---YWIVGLEQTSSS 120
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S4N1C3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1C3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.370e-24 Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 RQ +++CASL+DKVPNLAGLART+EIFAA +LVVPD V K F IS AE+W+ IEE E L++WL + K++G + +VGVEQT++S Sbjct: 1407 RQGLIVCASLIDKVPNLAGLARTAEIFAADRLVVPDQSVRKMDNFKSISVSAEEWIRIEECKERDLLSWLNKRKQEG---YTIVGVEQTSSS 1495
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7R9V1J9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1J9_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 4.310e-24 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 RQ +V+CASL+DK+PNLAGLART E+F A+ L VPD RV +PAF+ IS AEQW+ + EV E L+ WL R + +G + L+G+EQT S Sbjct: 56 RQGIVICASLIDKLPNLAGLARTCEVFRASALAVPDLRVASDPAFASISVTAEQWVNMVEVKEGALLPWLLRKQAEG---YALLGLEQTAES 144
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: W7U0J8_9STRA (Rrna methylase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0J8_9STRA) HSP 1 Score: 103 bits (257), Expect = 8.670e-24 Identity = 50/91 (54.95%), Postives = 72/91 (79.12%), Query Frame = 1 Query: 4 QPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 Q VMCASL+++VPNLAGLART EIFA +KLV+PD R+L++P F KIS+ A +W+ IEEV E + A+++R K++G + +VG+EQT++S Sbjct: 659 QEFVMCASLLERVPNLAGLARTCEIFAVSKLVIPDMRLLRDPLFEKISSSAGRWIKIEEVHEGRTRAYIQRCKQEG---YTIVGLEQTDDS 746
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S1ZWU9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWU9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.520e-23 Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 +Q +V+CA+LVDKVPNLAGLART+EIFAA +LV+PD V K F +S A W+ IEE E+ L++WL+ + G + +VG+EQT++S Sbjct: 39 KQELVICATLVDKVPNLAGLARTAEIFAADRLVIPDTSVCKMDIFKSVSVSAGDWITIEECKEDGLLSWLKHQRENG---YKIVGLEQTSSS 127
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A2D4CC22_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC22_PYTIN) HSP 1 Score: 102 bits (254), Expect = 2.280e-23 Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 1 RQPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 RQPV++CASLVDKVPNLAGLART EIF A++LVVP RV + AF IS A +W+P+EEV E LVA L+R K G +V VEQT +S Sbjct: 3934 RQPVILCASLVDKVPNLAGLARTCEIFNASRLVVPSLRVCDDEAFETISVTANKWIPMEEVRAEHLVAALQRWKSDG---FTIVAVEQTASS 4022
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Match: A0A7S2RYK0_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYK0_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.050e-23 Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 1 Query: 4 QPVVMCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWLPIEEVGEEQLVAWLRRAKRQGGAGHVLVGVEQTNNS 276 Q +++CASL+DKVPNLAGLART+EIFAA +L++PD V K F IS GA +W+ IEE E+ L++WL + K +G + +VG+EQT++S Sbjct: 1006 QDLIVCASLIDKVPNLAGLARTAEIFAADRLIIPDVGVCKMDNFKSISVGAGEWIKIEECKEKDLLSWLNQRKEEG---YNIVGIEQTSSS 1093 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6499.15178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6499.15178.1 >prot_L-elsbetiae_contig6499.15178.1 ID=prot_L-elsbetiae_contig6499.15178.1|Name=mRNA_L-elsbetiae_contig6499.15178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp MCASLVDKVPNLAGLARTSEIFAATKLVVPDARVLKNPAFSKISTGAEQWback to top mRNA from alignment at L-elsbetiae_contig6499:5358..6419+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6499.15178.1 ID=mRNA_L-elsbetiae_contig6499.15178.1|Name=mRNA_L-elsbetiae_contig6499.15178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig6499:5358..6419+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6499:5358..6419+ >mRNA_L-elsbetiae_contig6499.15178.1 ID=mRNA_L-elsbetiae_contig6499.15178.1|Name=mRNA_L-elsbetiae_contig6499.15178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig6499:5358..6419+ (Laminarionema elsbetiae ELsaHSoW15)back to top |