mRNA_L-elsbetiae_contig6472.15151.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6472.15151.1
Unique NamemRNA_L-elsbetiae_contig6472.15151.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 3.230e-149
Identity = 253/349 (72.49%), Postives = 273/349 (78.22%), Query Frame = 1
Query:    1 SRCYWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQSAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEGLYTAATIALRSGCEATRRFLASTNASLAAAASTATEASRG-ECAWKLLGDLYTYAHKLPPMCFEGEGAREGHGQQGGEGYALGLGTKEAA-EHQA 1041
            +RCYWEVG   REDR YCFNSLLKAAKLDPSNAEAFEWLG+WYQ VGGDRERARGCF R       + GAGEALA LYL  GQETLAV LFRQ AAVSVACHWAWAGLGRTKILEGKLAEAASH+QQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAE+LLA++Q   +                 SVE AARVRVRTQVGTIQRQIGQVDEAVSSF +AL   PES LALEG+GEAYLAQAHARTSEGLY AA  ALR+G +AT+RFL  + A+    +S    A+   ECAWKLLGDL+TYAHKLPPMCFE EG+RE  G     G  LGLGT +AA EH A
Sbjct:  532 ARCYWEVGGLYREDRKYCFNSLLKAAKLDPSNAEAFEWLGHWYQGVGGDRERARGCFLRXXXXXXXLTGAGEALASLYLHTGQETLAVALFRQCAAVSVACHWAWAGLGRTKILEGKLAEAASHVQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEDLLADQQDPPS-----------------SVEAAARVRVRTQVGTIQRQIGQVDEAVSSFNDALTRDPESILALEGSGEAYLAQAHARTSEGLYNAAAKALRNGRDATKRFLDLSKATTGKGSSGEGAAAVSMECAWKLLGDLHTYAHKLPPMCFEDEGSREQRGGSAEGGSVLGLGTSQAAVEHAA 863          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 3.590e-134
Identity = 235/331 (71.00%), Postives = 253/331 (76.44%), Query Frame = 1
Query:  100 EAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQSAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEGLYTAATIALRSGCEATRRFL-----------------ASTNASLAAAASTATEASRGECAWKLLGDLYTYAHKLPPMCFEGEGAREGHGQQGGEGYALGLGTKEAAEHQA 1041
            +AFEWLGYWYQ VGGDRERARGCF R+VKLDP++ GAGEALA LYL  GQETLAV LFRQ AAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAE+LLA++Q   +                 SVE AARVRVRTQVGTIQRQIGQVDEAVSSF +ALAL PES LALEG+GEAYLAQAHARTSEGLYTAA  ALR+G +AT+RFL                 A+ +   +AAA+TA      ECAWKLLGDL TYAHKLPPMCFE EG+RE  G     G  L LGT  AA  QA
Sbjct:   31 KAFEWLGYWYQGVGGDRERARGCFLRSVKLDPALPGAGEALASLYLHTGQETLAVALFRQCAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEDLLADQQDPPS-----------------SVEAAARVRVRTQVGTIQRQIGQVDEAVSSFNDALALDPESILALEGSGEAYLAQAHARTSEGLYTAAAKALRNGRDATKRFLDLAKATTGNARSGEGAGAAPSGGRSAAAATALSM---ECAWKLLGDLQTYAHKLPPMCFENEGSRERRGGSAEGGSVLVLGTSRAAVEQA 341          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: A0A836CP95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP95_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.350e-51
Identity = 136/361 (37.67%), Postives = 165/361 (45.71%), Query Frame = 1
Query:    4 RCYWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAV--------------GLFRQSAAVSVACHWAWAGLGRTKILEGKLAEA----------------------------ASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEGLYTAATIALRSGCEATRRFLASTNASLAAAASTATEASR----GECAWKLLGDLYTYAHKLPPMCF 948
            RC W +G   R  R  CF +LL+AA+ DP  A AF  LG WY E GGD  RARGC  RA+KL                       AV              GL       +V   WAW+ LGR  +  G+L EA                            A+H+QQA+ G P  W  W DLGW YH + KQAAALKAY RA  ++         +E    A D++  RA     AA VR+ T  G   R+IGQVDEA  +   ALALAP  +LA  G  +A LA+AHAR +EG   AA   LR G      FL + + S  +                 AWKLLGDL  YAH+LPP CF
Sbjct:  456 RCLWALGGARRSARDGCFAALLRAARADPGCALAFALLGRWYLEEGGDEARARGCLARALKLXXXXXXXXXXXXXXXXXXXXXXXAVAQCRAPPPQARSHHGLRPLVMRTAVQASWAWSALGRHYMGAGQLDEATAAASAXXXXXXXXXXXXXXXXXXXXXXAAHLQQALAGAPRDWRGWGDLGWVYHRQAKQAAALKAYARALAVM---------EEGADAASDDDAARA-----AAAVRILTDAGRAHREIGQVDEAAEALDRALALAPRDALARIGGAQAALARAHARATEGQNGAAADCLRRGAALAEAFLGAADGSGGSXXXXXXXXXXXXXXARTAWKLLGDLRVYAHRLPPGCF 802          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: A0A822FRJ0_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822FRJ0_9NEOB)

HSP 1 Score: 115 bits (289), Expect = 1.080e-24
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   10 YWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLY--LQNGQETLAVGLFRQSAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEEL 495
            YW +G E R+DR+   N  LKAA+LD    + F +LG++Y++V GDR RARGC+++A +LD S   +G A   L   L++ +  LA+       A S A  WAW   G   +  G  ++A + +Q A+R  P   + W  LG  Y + G    ALK++TRA EL
Sbjct:  464 YWLMGEETRKDRTKALNHFLKAARLDAHMGKVFCYLGHYYRDVAGDRNRARGCYRKAFELDDSDAESGAAAVDLSVELEDTETALAILTAVTQKASSGAAKWAWLRRGLYYLKAGHHSQAVADLQAALRADPKDCNCWESLGEAYLSRGSYTTALKSFTRASEL 627          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: H2XYI6_CIOIN (Uncharacterized protein n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XYI6_CIOIN)

HSP 1 Score: 115 bits (289), Expect = 1.140e-24
Identity = 82/252 (32.54%), Postives = 122/252 (48.41%), Query Frame = 1
Query:   13 WEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQSAAVSV--ACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEG 762
            WE+  E + D++ CF + LKAAKLDP  +EAF ++G +YQ+V  D  RA  CF +++ LD     AG ALA LY++      AV ++   ++ S    C   W  LG  K+   +   A    Q A+R        W  LG  Y   G   AALK++ +A EL    QP +                  SV          Q+  I++ +GQ  EA+  + + L + P+   AL+G GE++L+ AH+  SEG
Sbjct:  462 WEI-EEYKVDKTKCFTTFLKAAKLDPYESEAFYYIGLFYQDVIKDSTRAMKCFNKSIALDTFNEKAGLALADLYIKEENMAAAVEVYNSLSSSSTPGTCKLTWLRLGLCKLKLKETESAIKSFQAALRADANDHICWECLGEAYMQRGSHGAALKSFQKASEL----QPGSVF----------------SVH---------QMAAIKQLLGQFTEAIEVYHQVLEMKPDYVPALKGLGESHLSIAHSMLSEG 683          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: H2XVM3_CIOIN (Uncharacterized protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=H2XVM3_CIOIN)

HSP 1 Score: 115 bits (289), Expect = 1.160e-24
Identity = 82/252 (32.54%), Postives = 122/252 (48.41%), Query Frame = 1
Query:   13 WEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQSAAVSV--ACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEG 762
            WE+  E + D++ CF + LKAAKLDP  +EAF ++G +YQ+V  D  RA  CF +++ LD     AG ALA LY++      AV ++   ++ S    C   W  LG  K+   +   A    Q A+R        W  LG  Y   G   AALK++ +A EL    QP +                  SV          Q+  I++ +GQ  EA+  + + L + P+   AL+G GE++L+ AH+  SEG
Sbjct:  457 WEI-EEYKVDKTKCFTTFLKAAKLDPYESEAFYYIGLFYQDVIKDSTRAMKCFNKSIALDTFNEKAGLALADLYIKEENMAAAVEVYNSLSSSSTPGTCKLTWLRLGLCKLKLKETESAIKSFQAALRADANDHICWECLGEAYMQRGSHGAALKSFQKASEL----QPGSVF----------------SVH---------QMAAIKQLLGQFTEAIEVYHQVLEMKPDYVPALKGLGESHLSIAHSMLSEG 678          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: D3ZL50_RAT (Tetratricopeptide repeat domain 37 n=5 Tax=Rattus norvegicus TaxID=10116 RepID=D3ZL50_RAT)

HSP 1 Score: 115 bits (289), Expect = 1.200e-24
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   10 YWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLY--LQNGQETLAVGLFRQSAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEEL 495
            YW +G E R+DR+   N  LKAA+LD    + F +LG++Y++V GDR RARGC+++A +LD S   +G A   L   L++ +  LA+       A S A  WAW   G   +  G  ++A + +Q A+R  P   + W  LG  Y + G    ALK++TRA EL
Sbjct:  464 YWLMGEETRKDRTKALNHFLKAARLDAHMGKVFCYLGHYYRDVAGDRNRARGCYRKAFELDDSDAESGAAAVDLSVELEDTETALAILTAVTQKASSGAAKWAWLRRGLYYLKAGHHSQAVADLQAALRADPKDCNCWESLGEAYLSRGSYTTALKSFTRASEL 627          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: A0A7M4E7J6_CROPO (Tetratricopeptide repeat domain 37 n=1 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4E7J6_CROPO)

HSP 1 Score: 115 bits (287), Expect = 2.190e-24
Identity = 77/254 (30.31%), Postives = 122/254 (48.03%), Query Frame = 1
Query:   10 YWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQ--SAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEGL 765
            YW +G E R+D++   +  LKAAKLD      F +LG++Y++V GD+ RARGC+++A +L+ S   AG A   L ++ G    A+ +       A + A  WAW   G   +   + ++A + +Q A+R  P   + W  LG  Y + G    ALK++T+A EL  E                       S+  AA          I + +G+  EA++ + + L  + E   AL+G GE YL  A A  ++ L
Sbjct:  426 YWSMGEETRKDKTKALSQFLKAAKLDSYMGSVFCYLGHYYRDVAGDKNRARGCYKKAFELNQSDGEAGSAAVDLSMELGDTETAIAVLTSVTEKASAGAAKWAWIRRGLYYLRANQHSQAVADLQAALRADPKDSNCWESLGEAYLSRGGYTTALKSFTKASELNPES--------------------VYSIYQAA---------VIDQLLGRYKEAIAEYQKILKKSKEYVSALKGLGECYLMVARAALADYL 650          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: UPI001E1DE5C3 (tetratricopeptide repeat protein 37 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DE5C3)

HSP 1 Score: 114 bits (284), Expect = 5.370e-24
Identity = 78/248 (31.45%), Postives = 119/248 (47.98%), Query Frame = 1
Query:   10 YWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLY--LQNGQETLAVGLFRQSAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHA 747
            YW +G E R+D++  F   LKAA+LDP   + F +LG +Y++V GD+ RARGC+++A +LD +   +G A   L   L+  +  LAV       A +    WAW   G   +  G+ A+A + +Q A+R  P  ++ W  LG  Y + G    ALK++ RA EL  E   S                               +V  IQ+ +G+  EAVS +   +    +   AL+G GE +L+ A A
Sbjct:  417 YWSMGEETRKDKTKAFTHFLKAARLDPYMGKVFCYLGRYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEEMETALAVLTAVTQKASAGTAKWAWLRRGLYYLKAGQHAQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFIRASELNPESTYSVF-----------------------------KVAAIQQILGKYKEAVSQYQLIIKKNEDYVPALKGLGECHLSMARA 635          
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Match: A0A151PI05_ALLMI (Tetratricopeptide repeat protein 37 n=11 Tax=Crocodylia TaxID=1294634 RepID=A0A151PI05_ALLMI)

HSP 1 Score: 113 bits (283), Expect = 7.350e-24
Identity = 76/254 (29.92%), Postives = 121/254 (47.64%), Query Frame = 1
Query:   10 YWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDRERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQ--SAAVSVACHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVRVRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHARTSEGL 765
            YW +G E R+D++   +  LKAAKLD      F +LG++Y++V GD+ RARGC+++A +L+ S   AG     L ++ G    A+ +       A + A  WAW   G   +   + ++A + +Q A+R  P   + W  LG  Y + G    ALK++T+A EL  E                       S+  AA          I + +G+  EA++ + + L  + E   AL+G GE YL  A A  ++ L
Sbjct:  481 YWSMGEETRKDKTKALSQFLKAAKLDSYMGSVFCYLGHYYRDVAGDKNRARGCYKKAFELNRSDGEAGSTAVDLSMELGDTETAIAILTSVTEKASAGAAKWAWIRRGLYYLRANQHSQAVADLQAALRADPKDSNCWESLGEAYLSRGGYTTALKSFTKASELNPES--------------------VYSIYQAA---------VIDQLLGRYKEAIAEYQKILKKSKEYVSALKGLGECYLMVARAALADYL 705          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6472.15151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G059_ECTSI3.230e-14972.49Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JG00_9PHAE3.590e-13471.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP95_9STRA6.350e-5137.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A822FRJ0_9NEOB1.080e-2438.41(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
H2XYI6_CIOIN1.140e-2432.54Uncharacterized protein n=1 Tax=Ciona intestinalis... [more]
H2XVM3_CIOIN1.160e-2432.54Uncharacterized protein n=2 Tax=Ciona intestinalis... [more]
D3ZL50_RAT1.200e-2438.41Tetratricopeptide repeat domain 37 n=5 Tax=Rattus ... [more]
A0A7M4E7J6_CROPO2.190e-2430.31Tetratricopeptide repeat domain 37 n=1 Tax=Crocody... [more]
UPI001E1DE5C35.370e-2431.45tetratricopeptide repeat protein 37 n=1 Tax=Echino... [more]
A0A151PI05_ALLMI7.350e-2429.92Tetratricopeptide repeat protein 37 n=11 Tax=Croco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6472contigL-elsbetiae_contig6472:672..4440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score473.0
Seed ortholog evalue1.2e-130
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-28_003830.1
Exons5
Model size1042
Cds size1041
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6472.15151.1prot_L-elsbetiae_contig6472.15151.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6472 672..4439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.5767968-CDS-L-elsbetiae_contig6472:671..7731622816714.5767968-CDS-L-elsbetiae_contig6472:671..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 672..773 +
1691683760.0854936-CDS-L-elsbetiae_contig6472:671..7731691683760.0854936-CDS-L-elsbetiae_contig6472:671..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 672..773 +
1622816714.5873253-CDS-L-elsbetiae_contig6472:1410..15571622816714.5873253-CDS-L-elsbetiae_contig6472:1410..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 1411..1557 +
1691683760.1037793-CDS-L-elsbetiae_contig6472:1410..15571691683760.1037793-CDS-L-elsbetiae_contig6472:1410..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 1411..1557 +
1622816714.601151-CDS-L-elsbetiae_contig6472:2284..24161622816714.601151-CDS-L-elsbetiae_contig6472:2284..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 2285..2416 +
1691683760.120942-CDS-L-elsbetiae_contig6472:2284..24161691683760.120942-CDS-L-elsbetiae_contig6472:2284..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 2285..2416 +
1622816714.6133475-CDS-L-elsbetiae_contig6472:2888..31191622816714.6133475-CDS-L-elsbetiae_contig6472:2888..3119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 2889..3119 +
1691683760.1366565-CDS-L-elsbetiae_contig6472:2888..31191691683760.1366565-CDS-L-elsbetiae_contig6472:2888..3119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 2889..3119 +
1622816714.6245673-CDS-L-elsbetiae_contig6472:4010..44391622816714.6245673-CDS-L-elsbetiae_contig6472:4010..4439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 4011..4439 +
1691683760.1510222-CDS-L-elsbetiae_contig6472:4010..44391691683760.1510222-CDS-L-elsbetiae_contig6472:4010..4439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6472 4011..4439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6472.15151.1

>prot_L-elsbetiae_contig6472.15151.1 ID=prot_L-elsbetiae_contig6472.15151.1|Name=mRNA_L-elsbetiae_contig6472.15151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
SRCYWEVGRECREDRSYCFNSLLKAAKLDPSNAEAFEWLGYWYQEVGGDR
ERARGCFQRAVKLDPSMRGAGEALALLYLQNGQETLAVGLFRQSAAVSVA
CHWAWAGLGRTKILEGKLAEAASHIQQAIRGCPTSWSYWSDLGWCYHAEG
KQAAALKAYTRAEELLAEEQPSTTADEDEGCAKDEEDTRAKSVEHAARVR
VRTQVGTIQRQIGQVDEAVSSFTEALALAPESSLALEGAGEAYLAQAHAR
TSEGLYTAATIALRSGCEATRRFLASTNASLAAAASTATEASRGECAWKL
LGDLYTYAHKLPPMCFEGEGAREGHGQQGGEGYALGLGTKEAAEHQA
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mRNA from alignment at L-elsbetiae_contig6472:672..4440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6472.15151.1 ID=mRNA_L-elsbetiae_contig6472.15151.1|Name=mRNA_L-elsbetiae_contig6472.15151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3769bp|location=Sequence derived from alignment at L-elsbetiae_contig6472:672..4440+ (Laminarionema elsbetiae ELsaHSoW15)
TCAAGGTGCTACTGGGAAGTGGGGAGGGAGTGCCGTGAGGACCGCAGCTA CTGTTTCAACTCGCTTCTTAAGGCCGCCAAGCTCGACCCGTCCAACGCTG AGGTGACGTTCACGGCGGGTTTGTACCGTCGTTTGCCAAAGCCGAAAACG GCGTGATGATGATATGTGATAGTTGCTGCGCAGCGCAGGTTCCCGAATCG TTGCCTTGCATCAAACGATTAGCCCTTTTTATTTAAAGGCACAATTGTCT GTTCCCGACAACCCGCGAGAGTGAGAGCAGGTAAACCCCAGATGCATTGG TTCTGGTCAGAAAGCAAAGTAAAAGCAGGGCGTGTGTTCCACTTCTCTGT TCAGTGTCCTATACTTGGGATGCGATATTTTGGCGACATTGCGCACGCCG ACGGATTCCATCGCTGCAGTACGTACGTGCGCATGCACACGTGAAACGGG TGAATGGCCAACCATTGGGACCCCTTCTTGGGTAGTTGGGTCAACGTGTG CTTAACACCCCCCCGAAAACGATGCTCGATTACCGGTTGAGGTGAGCGCA AAAGTGCGAATCGGTATAGATCACAACCACAAGACTCTTATGCACCGGGC CCATTGCCGCGGATACCACTTTTTCAGTTTGGTGCTATTCCTTTCGGTAG ATTCGCTGACTGAGGTTGCAAGGCCGCAGCGCAACCCTTACCCTTTCCAC CCTTCTTCTGTCACGATCTCTTAACTGACGAAAGCACAGGCGTTCGAGTG GCTTGGATACTGGTACCAGGAGGTCGGGGGTGATCGAGAGCGCGCACGCG GCTGTTTCCAACGGGCGGTGAAGCTCGACCCTTCTATGAGAGGGGCAGGG GAAGCGTTGGCTTTGCTTTACCTTCAGAACGGGCAGGTTGGTTGCGGGTG GTTTTGGTTTTGGTTTTGGTTTTGATAATGCCTCGTCTTTTTGTCGTGGT TGTCGTTTGTTGTTCTTGCTGTTAAGAGTATCGTTGCACTTGGTAGCCCT GGCGGCTCTTGCAAGTCCTGGGCGTACTGGGCCGCGTACTTCGGCCCTGT CGAGACAATTTCACGGTCTCTGATGTATGATACCCCTTTCCGTAATGTTG TTGTTCTTATCATACATATACATTAAAAACCGTTCCGATCTCTCTATCGA GTACCCCCATGATTCTGTATTATCCAACACTGCCGCGGTCGATTCCCGTG GTCACAGGATAACTTACGTTATAGGAGTAAACTAAATAAATGTAGTGGGT CCGAAGGGTTCGCAAAGCAGAAAAACGAAAGATCTAACACAGATAGTCTG GAGCCCTCCGCTCTCCCCTCTGCACGCTGTGTGAGGTGACAACAAAACTG GAAAAGCCAACATCACCAACCGCGGGGGATACACCCCCTCGTCCTATCTT GGTACCCCAACAACCGTATATATATGTACGAGCGGGAATAAGGATACTCG TACCGACCCGAGGAATGCTCTTCCACTGCATAGACCAACCAAAGGAGCCC AATCTTCTTGTTGTAGTGCTCAATCTGCGGTGCCCCCCCCCCGGTAAAGA TAATACTAACCTGGGATATTCGATGTGACAATTTATGTCGCCATGGAAAA CTAATTTCCGCAGGAGACCCTCGCGGTCGGTTTGTTCCGGCAGAGTGCGG CTGTGTCGGTGGCGTGCCACTGGGCGTGGGCGGGCCTGGGGCGTACCAAA ATTCTGGAGGGAAAGCTAGCCGAGGCGGCTTCGCATATACAGCAGGTGAG CGGGACACGCAGCAGGCGGGATGGTGAAGCCACTCAGAGGAAGACCCGGG TTGGTGGTTGCTGCAGTAAGTCCAGCGGGTGATATTTCCAGCAGCGCATC TGCGGCATGATGCATGGTAGGCATCTACTAGGCATCACGCACGAGAAAGC TGTACCTGGACAGCAGTATGAATCATGACAGCATTAGCATTCGTACAGCT ATCGTAGAAAATAGCAGCTGTTTGGAGTTTAAATGGTATTCGAATCGATT CGGAGGTGGCGTGAGACACTGTTGAAACGATGGAGGTTTTGAACCTATTC TCCTCCAAACTTATACTCCTCCAATCGCGTTGCGGTTTTGGTGTGCATTT GTATTACTCCCTCGAATTAATTCAAAACAAATTCCCGACCTTTGCCCACA TCGTTGGTCCCCATGTCGTCGGTATGGGCGATGGTGATTTCCGCTACCCC CTTCCTTACCGCCCCAGGCGATTCGAGGATGCCCGACGTCCTGGTCGTAC TGGTCAGACCTGGGCTGGTGCTACCACGCCGAAGGTAAACAGGCGGCTGC CCTTAAGGCTTACACAAGGGCAGAAGAGCTCCTCGCAGAGGAGCAGCCCT CCACAACAGCGGACGAAGATGAAGGGTGTGCCAAGGACGAGGAAGATACC CGTGCGAAGTCGGTTGAACATGCGGCGAGAGTTAGAGTAAGGACGCAGGT ACGCCAAGCGTTGATTGAGCCTCTGGTTCTGCTGTTGCCGTGATACTTAG CAACGTGGGGTTTCGTGACTCGACATTTTTTCTTCTCCTCTTGGCTACAT ACCTTTATTCCTGTTTGTGTGCCCTTTTATGTTTGGGTAAGCCCTGTGCG GAGGGCGGCCCGGCTGTTCTGGCTATTCTTTGAGTGCATTGAAAGTCAAC TGGATGAAGACGATATGTGTCGTTGAATAGCCTGTGTCCGCAACCTTTTC CTGACACGATCAAAGTTCGAGGTCACACATCGCCTGTGTAATCTGTAACC TGTGTATAACGCACTTGTTCCAATCGCCAAACCACGAGTTCCTGCTGTTT TTCCCTGCCAACCCTGCATTAAGATTTTGTTGCGCTGTAATAGGGGGCGG GGAGGGTGGGGATGCGTTAGTGCAGCCGCCCTACAACAGAAGGAAACGAT GCCCGCCATGATGGGGGATAGAAAGCCAGATCTCACTGTTGTAACATACC GTTGAGTAGATTAGCTCATGTGTCTCAAACGTTGGTCAGTGGCCTTGTTC TGGAGCTGCTGCTTGGTGTCTCTCATTGCCATTATAATACCCGTTCCATC ACTCAATGCCTCCATATTGGGTTAAAAACTGACATGCAGACACACCTACA CACCTAGATGGGTTAATACGATTGGTTCGAGTTGGTTTGTTGTGCTTTTG TCCCCTCTTTCTGGCACCAGTGTGGTTCTTCGGTGTATCTATGTATGCTT GACGTATCAGCCGGCTCAAACAGGAGGAGGCTACTGGATAAAAACAGGGC ATGTTTTGCCCCACCCTTCCCCAGTTCGGGTATATATATACCCAAGATGG CACAGCAGAAACTGTCGTGGTGGATGACGTCGCCTGCAGGTGGGCACTAT CCAGCGCCAGATCGGCCAGGTAGACGAAGCCGTGTCGAGCTTCACAGAGG CCCTCGCCCTCGCCCCAGAGTCAAGCCTCGCGCTGGAGGGGGCCGGCGAA GCGTACCTCGCGCAAGCCCACGCCAGGACCAGCGAGGGGCTCTACACCGC GGCGACGATTGCCCTCCGCAGCGGCTGCGAGGCAACACGGCGCTTTCTCG CTAGCACTAACGCTAGCCTGGCTGCGGCTGCCTCAACAGCGACGGAAGCT TCACGCGGCGAGTGCGCTTGGAAGCTGCTGGGGGACCTCTACACCTACGC GCATAAGCTGCCGCCGATGTGCTTTGAGGGCGAGGGGGCCAGGGAGGGTC ATGGTCAGCAGGGCGGAGAAGGGTACGCCTTGGGGCTAGGGACGAAGGAA GCGGCTGAACACCAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6472:672..4440+

>mRNA_L-elsbetiae_contig6472.15151.1 ID=mRNA_L-elsbetiae_contig6472.15151.1|Name=mRNA_L-elsbetiae_contig6472.15151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig6472:672..4440+ (Laminarionema elsbetiae ELsaHSoW15)
TCAAGGTGCTACTGGGAAGTGGGGAGGGAGTGCCGTGAGGACCGCAGCTA
CTGTTTCAACTCGCTTCTTAAGGCCGCCAAGCTCGACCCGTCCAACGCTG
AGTCAAGGTGCTACTGGGAAGTGGGGAGGGAGTGCCGTGAGGACCGCAGC
TACTGTTTCAACTCGCTTCTTAAGGCCGCCAAGCTCGACCCGTCCAACGC
TGAGGCGTTCGAGTGGCTTGGATACTGGTACCAGGAGGTCGGGGGTGATC
GAGAGCGCGCACGCGGCTGTTTCCAACGGGCGGTGAAGCTCGACCCTTCT
ATGAGAGGGGCAGGGGAAGCGTTGGCTTTGCTTTACCTTCAGAACGGGCA
GGCGTTCGAGTGGCTTGGATACTGGTACCAGGAGGTCGGGGGTGATCGAG
AGCGCGCACGCGGCTGTTTCCAACGGGCGGTGAAGCTCGACCCTTCTATG
AGAGGGGCAGGGGAAGCGTTGGCTTTGCTTTACCTTCAGAACGGGCAGGA
GACCCTCGCGGTCGGTTTGTTCCGGCAGAGTGCGGCTGTGTCGGTGGCGT
GCCACTGGGCGTGGGCGGGCCTGGGGCGTACCAAAATTCTGGAGGGAAAG
CTAGCCGAGGCGGCTTCGCATATACAGCAGGAGACCCTCGCGGTCGGTTT
GTTCCGGCAGAGTGCGGCTGTGTCGGTGGCGTGCCACTGGGCGTGGGCGG
GCCTGGGGCGTACCAAAATTCTGGAGGGAAAGCTAGCCGAGGCGGCTTCG
CATATACAGCAGGCGATTCGAGGATGCCCGACGTCCTGGTCGTACTGGTC
AGACCTGGGCTGGTGCTACCACGCCGAAGGTAAACAGGCGGCTGCCCTTA
AGGCTTACACAAGGGCAGAAGAGCTCCTCGCAGAGGAGCAGCCCTCCACA
ACAGCGGACGAAGATGAAGGGTGTGCCAAGGACGAGGAAGATACCCGTGC
GAAGTCGGTTGAACATGCGGCGAGAGTTAGAGTAAGGACGCAGGCGATTC
GAGGATGCCCGACGTCCTGGTCGTACTGGTCAGACCTGGGCTGGTGCTAC
CACGCCGAAGGTAAACAGGCGGCTGCCCTTAAGGCTTACACAAGGGCAGA
AGAGCTCCTCGCAGAGGAGCAGCCCTCCACAACAGCGGACGAAGATGAAG
GGTGTGCCAAGGACGAGGAAGATACCCGTGCGAAGTCGGTTGAACATGCG
GCGAGAGTTAGAGTAAGGACGCAGGTGGGCACTATCCAGCGCCAGATCGG
CCAGGTAGACGAAGCCGTGTCGAGCTTCACAGAGGCCCTCGCCCTCGCCC
CAGAGTCAAGCCTCGCGCTGGAGGGGGCCGGCGAAGCGTACCTCGCGCAA
GCCCACGCCAGGACCAGCGAGGGGCTCTACACCGCGGCGACGATTGCCCT
CCGCAGCGGCTGCGAGGCAACACGGCGCTTTCTCGCTAGCACTAACGCTA
GCCTGGCTGCGGCTGCCTCAACAGCGACGGAAGCTTCACGCGGCGAGTGC
GCTTGGAAGCTGCTGGGGGACCTCTACACCTACGCGCATAAGCTGCCGCC
GATGTGCTTTGAGGGCGAGGGGGCCAGGGAGGGTCATGGTCAGCAGGGCG
GAGAAGGGTACGCCTTGGGGCTAGGGACGAAGGAAGCGGCTGAACACCAG
GCGGTGGGCACTATCCAGCGCCAGATCGGCCAGGTAGACGAAGCCGTGTC
GAGCTTCACAGAGGCCCTCGCCCTCGCCCCAGAGTCAAGCCTCGCGCTGG
AGGGGGCCGGCGAAGCGTACCTCGCGCAAGCCCACGCCAGGACCAGCGAG
GGGCTCTACACCGCGGCGACGATTGCCCTCCGCAGCGGCTGCGAGGCAAC
ACGGCGCTTTCTCGCTAGCACTAACGCTAGCCTGGCTGCGGCTGCCTCAA
CAGCGACGGAAGCTTCACGCGGCGAGTGCGCTTGGAAGCTGCTGGGGGAC
CTCTACACCTACGCGCATAAGCTGCCGCCGATGTGCTTTGAGGGCGAGGG
GGCCAGGGAGGGTCATGGTCAGCAGGGCGGAGAAGGGTACGCCTTGGGGC
TAGGGACGAAGGAAGCGGCTGAACACCAGGCG
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