mRNA_L-elsbetiae_contig644.15114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig644.15114.1
Unique NamemRNA_L-elsbetiae_contig644.15114.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig644.15114.1 vs. uniprot
Match: A0A6H5KS19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS19_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.690e-7
Identity = 44/74 (59.46%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  167 MSDD-GGDQEASSQ--GRWLGAVRSWVGSAPPQGAEAPAASPSP------ALSADEIRRRRLERMGGSNTQQPE 361
            MSD  GGD  A  Q  GRWLGAVRSW+  A     EAPA           ALSADEIRRRRLERMGGSN  QP+
Sbjct:    1 MSDPTGGDNAAEDQQQGRWLGAVRSWIRGAE---GEAPAXXXXXXXXXXXALSADEIRRRRLERMGGSNMDQPQ 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig644.15114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KS19_9PHAE1.690e-759.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig644contigL-elsbetiae_contig644:8006..9646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size636
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig644.15114.1prot_L-elsbetiae_contig644.15114.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig644 8172..9646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.6470432-UTR-L-elsbetiae_contig644:8005..81711622816710.6470432-UTR-L-elsbetiae_contig644:8005..8171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig644 8006..8171 +
1691683757.277582-UTR-L-elsbetiae_contig644:8005..81711691683757.277582-UTR-L-elsbetiae_contig644:8005..8171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig644 8006..8171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.6618886-CDS-L-elsbetiae_contig644:8171..83601622816710.6618886-CDS-L-elsbetiae_contig644:8171..8360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig644 8172..8360 +
1691683757.2864664-CDS-L-elsbetiae_contig644:8171..83601691683757.2864664-CDS-L-elsbetiae_contig644:8171..8360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig644 8172..8360 +
1622816710.6738625-CDS-L-elsbetiae_contig644:9367..96461622816710.6738625-CDS-L-elsbetiae_contig644:9367..9646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig644 9368..9646 +
1691683757.298936-CDS-L-elsbetiae_contig644:9367..96461691683757.298936-CDS-L-elsbetiae_contig644:9367..9646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig644 9368..9646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig644.15114.1

>prot_L-elsbetiae_contig644.15114.1 ID=prot_L-elsbetiae_contig644.15114.1|Name=mRNA_L-elsbetiae_contig644.15114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MSDDGGDQEASSQGRWLGAVRSWVGSAPPQGAEAPAASPSPALSADEIRR
RRLERMGGSNTQQPERQQQKQSPSPSPPRAPDSDSTPSSGPVAMDVEPPA
PATAATAAKPAAPLAAAAAVAAAAPTAAPAAAGAAERGSLKAGGGGGGGG
GGGGVA
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mRNA from alignment at L-elsbetiae_contig644:8006..9646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig644.15114.1 ID=mRNA_L-elsbetiae_contig644.15114.1|Name=mRNA_L-elsbetiae_contig644.15114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1641bp|location=Sequence derived from alignment at L-elsbetiae_contig644:8006..9646+ (Laminarionema elsbetiae ELsaHSoW15)
CAATCTTTTCCTCTCTCTCTCTCTCGCTGCAAGGAGGCGAAGCTGCTGAG
TAAGCCGGGACAGACGTAGATTGCTGCCCATACACCGACACTGGGCTTGT
TCAACCAGCTTATTACATAGCTTACTCCCAAAATAAGGTTTGGGCAGGCA
ACACCTTTTAGACGAGATGTCTGATGATGGAGGCGATCAGGAGGCTTCTT
CACAAGGGCGCTGGCTTGGTGCTGTGAGGTCTTGGGTAGGAAGTGCCCCT
CCGCAGGGAGCTGAAGCTCCGGCTGCGAGCCCGTCCCCAGCGTTGAGCGC
GGACGAGATAAGGAGGAGACGGCTCGAGAGAATGGGAGGGAGCAACACAC
AGCAGGTAGACACGGCATGCCTCTCGGTTGTTGTGAACCCTCCCAGGCTA
GACTGTGTGTACCGTTCTGCAGAAGACCTTGGGGGGGCGTTGTTGTCAGT
CTGGCGCTGGGAATCTTGCAGGGAACTCTGTGTGATCCTCTCTCCTCGTG
ATATGTCAGTGCAAAATTGTAGATGGGAGCATACATAGAGTAGCAGCCGA
TGTAAAGCTATAAAGTCTAGACTATCTTATAGTCTAACCTGCTGGACTGC
ATCTGTTTTTTACAGCCGAAACACACAGCAGTACACACCCATACCTGCGC
TTACCCATTTTCCCTCTCTCTGTCTCGAACAAGCTCGGCGCGTGGAACAT
TAAAGTATTTACCTGTATCCCTCTGATCTTCGATTTCTATCAATAAACTG
CTTCTGCTGTAAATCAAATCTCACGCCTGATTTATCTCCTAAGAATTTTC
CGCAACTGCGGTGGCACTACTACTATAATAGGATAGATATATGGTAGAAA
ACTACCCATCTAGACTACCCATCTACGCTCGTTAAGACAAACACATTCTA
TCTGCTGGAAAGGTTTAGGGCGTCAGCACCGCGCACGTGTGTGAGCTATG
CATGTAGCAGCTCGTCCTTGCGCCCCCCCCCAAGGTATACTATCTCACCC
GACCCCGCTACCGCAGGTGACACAAGATACCACACCCCCTGGATTGAATT
TTAGAGTTCGATCACTCCGTAATGGTGAAGGTGCCAGCTCCAAACAACAT
ATTTTCGGACAGCCCTCGACTAGATATTTCCAACGCCACCCCTTTCGGCA
CTGTCATTCTTCTCGCTGGGGAGGAACCGAGCTTTGAAAATCTGTCAAAG
GTTTGAAAATCTGTCAAAGGGGTGTGGTATCTTGTGTCACCTACGGTAAC
CCGCTTTCTGCGTTCACCCTGTATTGTTGCGTACGAGTAATAAGTATGAC
CGCACACCGCACTCAACAAAACCACCCTCGAAAAAACGCGTTCGCGACCC
ACCGCTGCGCAGCCCGAGCGGCAGCAGCAGAAACAATCTCCGTCACCGTC
GCCGCCACGGGCGCCCGACAGTGACAGCACCCCCAGCAGCGGCCCGGTAG
CCATGGACGTGGAACCCCCCGCCCCTGCCACGGCGGCAACGGCTGCAAAG
CCTGCCGCCCCGTTGGCAGCGGCGGCAGCGGTAGCAGCCGCAGCCCCGAC
TGCTGCACCCGCGGCGGCAGGAGCGGCGGAGAGGGGGTCGCTGAAAGCGG
GAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig644:8006..9646+

>mRNA_L-elsbetiae_contig644.15114.1 ID=mRNA_L-elsbetiae_contig644.15114.1|Name=mRNA_L-elsbetiae_contig644.15114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig644:8006..9646+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGATGATGGAGGCGATCAGGAGGCTTCTTCACAAGGGCGCTGGCT
TGGTGCTGTGAGGTCTTGGGTAGGAAGTGCCCCTCCGCAGGGAGCTGAAG
CTCCGGCTGCGAGCCCGTCCCCAGCGTTGAGCGCGGACGAGATAAGGAGG
AGACGGCTCGAGAGAATGGGAGGGAGCAACACACAGCAGATGTCTGATGA
TGGAGGCGATCAGGAGGCTTCTTCACAAGGGCGCTGGCTTGGTGCTGTGA
GGTCTTGGGTAGGAAGTGCCCCTCCGCAGGGAGCTGAAGCTCCGGCTGCG
AGCCCGTCCCCAGCGTTGAGCGCGGACGAGATAAGGAGGAGACGGCTCGA
GAGAATGGGAGGGAGCAACACACAGCAGCCCGAGCGGCAGCAGCAGAAAC
AATCTCCGTCACCGTCGCCGCCACGGGCGCCCGACAGTGACAGCACCCCC
AGCAGCGGCCCGGTAGCCATGGACGTGGAACCCCCCGCCCCTGCCACGGC
GGCAACGGCTGCAAAGCCTGCCGCCCCGTTGGCAGCGGCGGCAGCGGTAG
CAGCCGCAGCCCCGACTGCTGCACCCGCGGCGGCAGGAGCGGCGGAGAGG
GGGTCGCTGAAAGCGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGTTGCACCCGAGCGGCAGCAGCAGAAACAATCTCCGTCACCGTCGCCGC
CACGGGCGCCCGACAGTGACAGCACCCCCAGCAGCGGCCCGGTAGCCATG
GACGTGGAACCCCCCGCCCCTGCCACGGCGGCAACGGCTGCAAAGCCTGC
CGCCCCGTTGGCAGCGGCGGCAGCGGTAGCAGCCGCAGCCCCGACTGCTG
CACCCGCGGCGGCAGGAGCGGCGGAGAGGGGGTCGCTGAAAGCGGGAGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGCA
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