mRNA_L-elsbetiae_contig6285.14907.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.180e-25 Identity = 69/141 (48.94%), Postives = 85/141 (60.28%), Query Frame = 3 Query: 3 GSRLCLDAFIIVLNQATDDKGWCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMD-APARKACSTTRPNAARVPAIRAYEVTWKLSALALRSM-GSPLSRVKRFTFDIWYDGDV-RGVEWPRGLEELSFGYAFNQ 416 G CLDA II LNQA+ + W TST +LQL SLELCA+CRS+ L + V+ TPT LW A R+ S R N RVP +RA VTWKL LALR+M G S V F+ +D D+ RG++WP L L G FN+ Sbjct: 8 GPSRCLDALIIALNQASGGE-WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFNR 147
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.320e-23 Identity = 67/141 (47.52%), Postives = 83/141 (58.87%), Query Frame = 3 Query: 3 GSRLCLDAFIIVLNQATDDKGWCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMD-APARKACSTTRPNAARVPAIRAYEVTWKLSALALRSM-GSPLSRVKRFTFDIWYDGDV-RGVEWPRGLEELSFGYAFNQ 416 G CLDA II LNQA+ + W TST +LQL SLELCAACRS+ L + V+ TP LW A R+ S R N RVP +RA VTWKL +ALR+M G S V F+ +D D+ RG++WP L G FN+ Sbjct: 39 GPSRCLDALIIALNQASGGE-WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNR 178
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.700e-17 Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = 3 Query: 6 SRLCLDAFIIVLNQATDDKGWCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMDAPARKACST-TRPNAARVPAIRAYEVTWKLSALALRSMGSPLSRVKRFTFDIWYDGDVRGVEWPRGLEEL 392 S+L DA I LNQ + GW TS +LQL SL+LC ACR VPT H+ VE D LW + A S +RVPA+R +VTW L+ L++R G V F +D V V WP GL++L Sbjct: 12 SKLRQDALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDAFESVDVLVFGDSFDYRVDRVTWPPGLKKL 141
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 5.150e-17 Identity = 59/157 (37.58%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 3 GSRLCLDAFIIVLNQATD--DKGWCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMDAPARKACSTTRPN----AARVPAIRAYEVTWKLSALALRSMGSPLSRVKRFTFDIWYDGD------------VRGVEWPRGLEELSFGYAFNQP 419 G DAF I L+QA + +K W TST ELQLGSL++C ACRS PTLHV V TPT LW P +A T+ + +RVP +RA +TW S L V+R ++W + + V WP GL +L F+ P Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLW-SPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETL---------VQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFHIP 151
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.400e-16 Identity = 56/143 (39.16%), Postives = 74/143 (51.75%), Query Frame = 3 Query: 3 GSRLCLDAFIIVLNQATDDKGWCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMDA---PARKACSTTRPNAAR----VPAIRAYEVTWKLSALALRSMGSPL-SRVKRFTFDIWYDGDV-RGVEWPRGLEELSFGY 404 G CL+AF++ L+ D + W ST++LQL SL+LC ACR VPTL + VE TP LW +A P + +P AAR VP V WKL A L L + V+ F +++ V G WP GL+ L GY Sbjct: 8 GDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLLFTGYHNDWVCDGFSWPTGLKRLDLGY 150
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: A0A6H5JR57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR57_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 1.220e-10 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 3 Query: 18 LDAFIIVLNQATDDKG-------WCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMDAPARKACSTTRPNAARVPAIRAYEVTWKLSALALRSMG 299 LDA + LNQA D + W TST LQL S++LC ACRSVPTL V ++ DTP LW P A + + P+ RVP +RA+ V W++ A + +G Sbjct: 18 LDALTVALNQAYDSRAGDGDNIRWFTSTLNLQLASVDLCRACRSVPTLLVKIDHDTPRSLW--TPTVYAGAYSAPSG-RVPPLRAHGVRWEIEATFAKHVG 115
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Match: A0A6H5JHB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB0_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.700e-9 Identity = 55/159 (34.59%), Postives = 69/159 (43.40%), Query Frame = 3 Query: 3 GSRLCLDAFIIVLNQATDDKG--WCTSTEELQLGSLELCAACRSVPTLHVVVEEDTPTGLWMDAPARKACSTTRPNAARVPAIRAYEVTWK------------------LSALAL---RSMGSPLSRVKRFTFDIWYDGDVRGVEWPRGLEELSFGYAF 410 GSR CLDAF I L+QA + W ST +LQ L LC+ACRSVPT HV +++ TP LW D R + +RVP + +TW L L L +S P R FD + WP L +L FG F Sbjct: 140 GSR-CLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQTPHSLW-DPNVRTS--------SRVPVVLGLRLTWVYGRMNDFVLDTGDRQWKFLEVLRLERFKSRSRPHRPKPRLVFDQEESSFLSSTAWPPSLRQLEFGDGF 288 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6285.14907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6285.14907.1 >prot_L-elsbetiae_contig6285.14907.1 ID=prot_L-elsbetiae_contig6285.14907.1|Name=mRNA_L-elsbetiae_contig6285.14907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=438bp MDAPARKACSTTRPNAARVPAIRAYEVTWKLSALALRSMGSPLSRVKRFTback to top mRNA from alignment at L-elsbetiae_contig6285:4528..6453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6285.14907.1 ID=mRNA_L-elsbetiae_contig6285.14907.1|Name=mRNA_L-elsbetiae_contig6285.14907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig6285:4528..6453+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6285:4528..6453+ >mRNA_L-elsbetiae_contig6285.14907.1 ID=mRNA_L-elsbetiae_contig6285.14907.1|Name=mRNA_L-elsbetiae_contig6285.14907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2628bp|location=Sequence derived from alignment at L-elsbetiae_contig6285:4528..6453+ (Laminarionema elsbetiae ELsaHSoW15)back to top |