mRNA_L-elsbetiae_contig625.14848.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig625.14848.1
Unique NamemRNA_L-elsbetiae_contig625.14848.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.240e-35
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S SC+V+ NFYGRLLFATI PLVVLGAL LTY V+RSRNRHSPAG+Q  + K LS+ALF++F+VYSSVSF +FQTFVC+ LD+GV YLR
Sbjct:  108 SASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLR 196          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.120e-34
Identity = 62/89 (69.66%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            SVSC+V++NFYGRL F T+ PLVV G L  TY ++RSRNRHSPAG+QA +SK LS+ALF+ F+VYSSVSF +FQTFVC+ LD+GVTYLR
Sbjct:  784 SVSCIVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLR 872          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 8.660e-33
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            SVSC+V+ NFYG   FATI PLVV GA  +TYTV++SRNRHSPAG+QA +SK LS+ LF++F+VYSSV F +FQTFVC+RLD G+ YLR
Sbjct:   73 SVSCIVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLR 161          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.840e-31
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 1
Query:   10 CLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            C+V+ N+YGRLLFATI PLVVL AL LTY V+RSRNRHSPAG Q  + K LS+ALF++F+VYS VSF +FQTFVC+ LD+GV YLR
Sbjct:  434 CVVDSNYYGRLLFATIGPLVVLAALALTYAVSRSRNRHSPAGTQTAKHKHLSIALFIMFVVYSWVSFNIFQTFVCETLDDGVEYLR 519          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.430e-25
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S SC+V  +F+ RLL ATI P+VVL  L LT+ V R RN  S A ++AV++K LS ALFV+F +YSSVSF VFQTFVCD LD+GV+YLR
Sbjct:  756 SYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLR 844          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.100e-24
Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S +C+ + NFY RLL ATI P++VLG LG TY VAR RNRH    ++ V+ + LSV LFV+F++Y++VS+ +F+TFVCD LD+G +YLR
Sbjct:  745 SFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLR 833          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.230e-24
Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S +C+ + NFY RLL ATI P++VLG LG TY VAR RNRH    ++ V+ + LSV LFV+F++Y++VS+ +F+TFVCD LD+G +YLR
Sbjct:  764 SFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLR 852          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.430e-23
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S  CLV  NFYGRL F+TI PL +LG L   + +A+  NRHS  G++    K LS+ALF++F +YSSVSF +FQTF+C+ LD+ V YLR
Sbjct:   88 SFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLR 176          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.160e-23
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S  C+V  NFYGRL F+T+ PL +LG L  T+ +A+  NRHS  G++    K LS+ALF++F  YSSVSF +FQTF+C+ LD+ V YLR
Sbjct:   66 SFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLR 154          
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.060e-22
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVRSKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR 267
            S  C VNI+F+ R++ +T+ PLV L  LGLTY VAR RNR S   LQ VR K +S+AL V F+VYS VS  +FQTF C+ LD+G TYLR
Sbjct:  911 SAGCFVNIDFHDRVVTSTVGPLVALAILGLTYIVARCRNRSSDQALQNVRRKHVSMALLVSFLVYSPVSSTIFQTFSCETLDDGKTYLR 999          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig625.14848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF7_ECTSI1.240e-3573.03Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JWI3_9PHAE3.120e-3469.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S0_ECTSI8.660e-3367.42Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JUB2_9PHAE6.840e-3169.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF5_9PHAE6.430e-2561.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L324_9PHAE3.100e-2455.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.230e-2455.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHA3_9PHAE1.430e-2353.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI2.160e-2352.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMC1_9PHAE6.060e-2257.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig625contigL-elsbetiae_contig625:22331..22794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.7e-29
Seed eggNOG ortholog2880.D7FPF7
Hectar predicted targeting categorysignal anchor
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.1621604-CDS-L-elsbetiae_contig625:22330..225521622816686.1621604-CDS-L-elsbetiae_contig625:22330..22552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig625 22331..22552 +
1691683739.613879-CDS-L-elsbetiae_contig625:22330..225521691683739.613879-CDS-L-elsbetiae_contig625:22330..22552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig625 22331..22552 +
1622816686.1822407-CDS-L-elsbetiae_contig625:22748..227931622816686.1822407-CDS-L-elsbetiae_contig625:22748..22793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig625 22749..22793 +
1691683739.6245484-CDS-L-elsbetiae_contig625:22748..227931691683739.6245484-CDS-L-elsbetiae_contig625:22748..22793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig625 22749..22793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig625.14848.1prot_L-elsbetiae_contig625.14848.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig625 22331..22793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig625.14848.1

>prot_L-elsbetiae_contig625.14848.1 ID=prot_L-elsbetiae_contig625.14848.1|Name=mRNA_L-elsbetiae_contig625.14848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
SVSCLVNINFYGRLLFATISPLVVLGALGLTYTVARSRNRHSPAGLQAVR
SKLLSVALFVLFIVYSSVSFVVFQTFVCDRLDNGVTYLR
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mRNA from alignment at L-elsbetiae_contig625:22331..22794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig625.14848.1 ID=mRNA_L-elsbetiae_contig625.14848.1|Name=mRNA_L-elsbetiae_contig625.14848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=464bp|location=Sequence derived from alignment at L-elsbetiae_contig625:22331..22794+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGTCTCATGCCTTGTGAACATCAACTTCTACGGACGCCTCCTCTTCGC CACGATCTCCCCGCTGGTCGTGTTGGGAGCGCTGGGACTAACGTACACGG TGGCCAGGTCAAGGAACCGACACTCCCCGGCGGGACTGCAAGCTGTGAGG AGCAAGCTCCTTTCGGTGGCGCTCTTTGTCCTGTTCATCGTCTACTCGTC CGTGTCATTCGTCGTGTTTCAGGTGAGTATTTTCTGGGTGCGCCGAGGGC AAAATATAAATACTCCTACATGATTGGCATGAAAGTAAAGTGTAGGCATG AGACGGCGGGAGGCCGGGCATCAGGCCGAAATACGATTTTCGCCATCAAT TCACGAAGAATTAACGGCAGACCCTCCCTGCCCTTCCTGACCCTTGCCGT GTCCGCCGCCGTGTCCAGACGTTTGTTTGCGACCGGCTTGACAACGGAGT CACGTATCTGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig625:22331..22794+

>mRNA_L-elsbetiae_contig625.14848.1 ID=mRNA_L-elsbetiae_contig625.14848.1|Name=mRNA_L-elsbetiae_contig625.14848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig625:22331..22794+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGTCTCATGCCTTGTGAACATCAACTTCTACGGACGCCTCCTCTTCGC
CACGATCTCCCCGCTGGTCGTGTTGGGAGCGCTGGGACTAACGTACACGG
TGGCCAGGTCAAGGAACCGACACTCCCCGGCGGGACTGCAAGCTGTGAGG
AGCAAGCTCCTTTCGGTGGCGCTCTTTGTCCTGTTCATCGTCTACTCGTC
CGTGTCATTCGTCGTGTTTCAGTCGGTCTCATGCCTTGTGAACATCAACT
TCTACGGACGCCTCCTCTTCGCCACGATCTCCCCGCTGGTCGTGTTGGGA
GCGCTGGGACTAACGTACACGGTGGCCAGGTCAAGGAACCGACACTCCCC
GGCGGGACTGCAAGCTGTGAGGAGCAAGCTCCTTTCGGTGGCGCTCTTTG
TCCTGTTCATCGTCTACTCGTCCGTGTCATTCGTCGTGTTTCAGACGTTT
GTTTGCGACCGGCTTGACAACGGAGTCACGTATCTGAGAACGTTTGTTTG
CGACCGGCTTGACAACGGAGTCACGTATCTGAGA
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