mRNA_L-elsbetiae_contig6122.14684.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6122.14684.1
Unique NamemRNA_L-elsbetiae_contig6122.14684.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6122.14684.1 vs. uniprot
Match: D7G4G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.000e-9
Identity = 77/123 (62.60%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:  226 GRYSHLPSLASIGEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLGQPRGGNSAXXXXXXXXXXAKPGAGPEEDRALTADEFIVKRLLDQGKLGRMEAAQMMLEFQQAAVPGKDPAG 594
            GRYS LPSLASIGE +XXXXXXXXXXXXXXXXXXXXXXXXXXX     PR  Q  GG  A              A  E ++ LTADEFI+K+LLD+GKLGRMEAAQMMLE +  A  G+ P G
Sbjct:   75 GRYSSLPSLASIGEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQ--PRRAQSVGGVPAE-------------AEAEGEKPLTADEFIIKKLLDEGKLGRMEAAQMMLECRSDAGVGRLPEG 182
[Close]
BLAST of mRNA_L-elsbetiae_contig6122.14684.1 vs. uniprot
Match: A0A6H5L1X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.530e-8
Identity = 68/112 (60.71%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  226 GRYSHLPSLASIGEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLGQPRGGNSAXXXXXXXXXXAKPGAGPEEDRALTADEFIVKRLLDQGKLGRMEAAQMMLEFQ 561
            GRYS LPSLASIGE +XXXXXXXXXXXXXXXXXXXXX           PR  Q  GG  A              A  E ++ LTADEFI+K+LLD+GKLGRMEAAQMMLEF+
Sbjct:  384 GRYSSLPSLASIGEEDXXXXXXXXXXXXXXXXXXXXXRWRQRGQRQ--PRRAQSVGGVPAE-------------AEAEGEKPLTADEFIIKKLLDEGKLGRMEAAQMMLEFE 480
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6122.14684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4G0_ECTSI7.000e-962.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1X2_9PHAE6.530e-860.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6122contigL-elsbetiae_contig6122:6181..7971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_000950.1
Exons3
Model size740
Cds size738
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6122.14684.1prot_L-elsbetiae_contig6122.14684.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6122 6181..7971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.0570178-CDS-L-elsbetiae_contig6122:6180..63631622816670.0570178-CDS-L-elsbetiae_contig6122:6180..6363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 6181..6363 -
1691683727.4717786-CDS-L-elsbetiae_contig6122:6180..63631691683727.4717786-CDS-L-elsbetiae_contig6122:6180..6363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 6181..6363 -
1622816670.0721116-CDS-L-elsbetiae_contig6122:6878..69331622816670.0721116-CDS-L-elsbetiae_contig6122:6878..6933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 6879..6933 -
1691683727.484252-CDS-L-elsbetiae_contig6122:6878..69331691683727.484252-CDS-L-elsbetiae_contig6122:6878..6933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 6879..6933 -
1622816670.0860996-CDS-L-elsbetiae_contig6122:7471..79711622816670.0860996-CDS-L-elsbetiae_contig6122:7471..7971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 7472..7971 -
1691683727.5035956-CDS-L-elsbetiae_contig6122:7471..79711691683727.5035956-CDS-L-elsbetiae_contig6122:7471..7971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 7472..7971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6122.14684.1

>prot_L-elsbetiae_contig6122.14684.1 ID=prot_L-elsbetiae_contig6122.14684.1|Name=mRNA_L-elsbetiae_contig6122.14684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
MSPEEQAEQAAAAAAAAAASAEALQQRRAAAAARFRARQQLDPQQAREKE
EEEEEEVEGRAEEGHGDGESDAESDGRYSHLPSLASIGEGNEDADDDDDS
VSSDYDSEGKDNNRGGGSSRARRPRLGQPRGGNSAQGAGAGGGGGAKPGA
GPEEDRALTADEFIVKRLLDQGKLGRMEAAQMMLEFQQAAVPGKDPAGGR
SGGDPVEQGGGEQGTEAGEVDVGGENESGLAPPGLARLAGDDTAPP
back to top

mRNA from alignment at L-elsbetiae_contig6122:6181..7971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6122.14684.1 ID=mRNA_L-elsbetiae_contig6122.14684.1|Name=mRNA_L-elsbetiae_contig6122.14684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1791bp|location=Sequence derived from alignment at L-elsbetiae_contig6122:6181..7971- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCTGAGGAGCAGGCAGAGCAAGCCGCCGCCGCCGCCGCCGCCGC
CGCGGCCTCGGCCGAAGCCCTGCAGCAACGGCGGGCGGCGGCGGCAGCTC
GGTTCAGAGCGAGGCAGCAGCTCGACCCTCAACAGGCGAGAGAGAAAGAG
GAGGAGGAGGAGGAGGAGGTGGAAGGGCGGGCGGAGGAAGGGCATGGGGA
TGGGGAGAGCGACGCCGAGAGTGACGGGAGGTACTCGCATCTGCCGAGCT
TAGCGTCGATAGGCGAAGGCAACGAGGACGCGGATGATGACGACGACAGT
GTCTCTTCGGATTACGATTCGGAGGGTAAAGACAACAACCGCGGAGGCGG
AAGCAGCCGCGCGCGGCGACCGCGGCTCGGGCAGCCTCGTGGTGGAAACT
CCGCTCAAGGGGCGGGAGCGGGGGGGGGGGGGGGGGCGAAGCCTGGGGCC
GGCCCAGAGGAAGATAGAGCGCTTACCGCCGACGAGTTTATCGTGAAAAG
GTGAGAACTGCTCCCTGTCTGTGCGCCCGGGAAGACCGGGTGAGAACCCC
CCGTGTCTGGAGCTAAAAAAGTACCACAAACGTGTTGCTCCCTCGGGTGT
TGCTTGGTGTACCAACCGTCAGTCGAAACACCCCAGGTATTTGGATGCAT
TTTTGTTCATCTAGATGATTACAGCACATTTTGTATTTTGTCCACACAGC
AGTAGATAAGTATTCTGGCTTGTTCACCCTCCTTTTCACGACAGCCTGGA
ACCGGAAGAGGGACGAAAGCAACTCGGAAGAGTCTGGCACAGGACGTGCA
ACTGGCCCCCCTGTGACCGCGTTAGTCAGTCAGAGCCGCTGCTGAAACCG
GAAAACTTGACGCTTTTGGCCTACATGAGAGGTTACCGCTTATTCTCGGG
GCCGTTTTTTTTCTGCTCTTTTGTTCACTCGTTATTGTTTGTTGTCTGTG
ATGTTGCACCACGCCGCGCTTTCGTCGCAACCGCCTGCTACCCCCCCCCC
CCACATCCGCATCTGTCGCCGTGTGTATGGTACCAAAGGTTGCTCGACCA
GGGGAAACTCGGACGCATGGAGGCCGCCCAAATGATGCTCGAGGTACGAT
ACGATACGATACCGATCCCGATACCGATACCCTCCGTCCACCTGAATTTG
TGTTGCTTCTCTTTGCGATGTTCGAATGAAGGAAGCCCAGGCTTGACTCG
CGTGAGTTAGTGCACGCGACAGCAGTGGCCATCCCTTTCGGTTCCACGCG
TTTGTTTCATTGTCGAGGATGGCGAAAGGCCCTTGCGCACGCACGCACGC
AAACGAGGGTCTAGGTTGTATGTGTGTGTAGCCCGTCTGCTTGGCATCCT
TCCGCGACTTGTTTGTCCACTTGTGTGTGAACATGTCTCCCTTGATTTTC
AAACGGGAGCTTGCACACGCACGCGTCTCTATTTCGATTTCCCGCCGAAC
ATACTAAGACCCGCGACAGCCATCTGAACCCCCGCCCGTCATCAGGGCTC
GCCTCAAAACCGCGCGCTAAATTACAGCAGTTAACGATGTTTTTGCCCAT
CCCGCCGCCGCTCCTTTTCGGTGACCTTTCTTCTTTTTGTGGGGGGCGCG
GTGTGCAGTTTCAGCAGGCCGCCGTACCCGGAAAAGACCCGGCGGGCGGC
CGCAGCGGTGGCGACCCCGTAGAACAAGGCGGGGGGGAGCAGGGCACGGA
GGCCGGGGAGGTAGACGTCGGAGGTGAAAATGAGTCCGGGCTGGCCCCTC
CCGGCTTGGCGAGACTTGCCGGTGACGACACCGCGCCACCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6122:6181..7971-

>mRNA_L-elsbetiae_contig6122.14684.1 ID=mRNA_L-elsbetiae_contig6122.14684.1|Name=mRNA_L-elsbetiae_contig6122.14684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig6122:6181..7971- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCTGAGGAGCAGGCAGAGCAAGCCGCCGCCGCCGCCGCCGCCGC
CGCGGCCTCGGCCGAAGCCCTGCAGCAACGGCGGGCGGCGGCGGCAGCTC
GGTTCAGAGCGAGGCAGCAGCTCGACCCTCAACAGGCGAGAGAGAAAGAG
GAGGAGGAGGAGGAGGAGGTGGAAGGGCGGGCGGAGGAAGGGCATGGGGA
TGGGGAGAGCGACGCCGAGAGTGACGGGAGGTACTCGCATCTGCCGAGCT
TAGCGTCGATAGGCGAAGGCAACGAGGACGCGGATGATGACGACGACAGT
GTCTCTTCGGATTACGATTCGGAGGGTAAAGACAACAACCGCGGAGGCGG
AAGCAGCCGCGCGCGGCGACCGCGGCTCGGGCAGCCTCGTGGTGGAAACT
CCGCTCAAGGGGCGGGAGCGGGGGGGGGGGGGGGGGCGAAGCCTGGGGCC
GGCCCAGAGGAAGATAGAGCGCTTACCGCCGACGAGTTTATCGTGAAAAG
ATGTCGCCTGAGGAGCAGGCAGAGCAAGCCGCCGCCGCCGCCGCCGCCGC
CGCGGCCTCGGCCGAAGCCCTGCAGCAACGGCGGGCGGCGGCGGCAGCTC
GGTTCAGAGCGAGGCAGCAGCTCGACCCTCAACAGGCGAGAGAGAAAGAG
GAGGAGGAGGAGGAGGAGGTGGAAGGGCGGGCGGAGGAAGGGCATGGGGA
TGGGGAGAGCGACGCCGAGAGTGACGGGAGGTACTCGCATCTGCCGAGCT
TAGCGTCGATAGGCGAAGGCAACGAGGACGCGGATGATGACGACGACAGT
GTCTCTTCGGATTACGATTCGGAGGGTAAAGACAACAACCGCGGAGGCGG
AAGCAGCCGCGCGCGGCGACCGCGGCTCGGGCAGCCTCGTGGTGGAAACT
CCGCTCAAGGGGCGGGAGCGGGGGGGGGGGGGGGGGCGAAGCCTGGGGCC
GGCCCAGAGGAAGATAGAGCGCTTACCGCCGACGAGTTTATCGTGAAAAG
GTTGCTCGACCAGGGGAAACTCGGACGCATGGAGGCCGCCCAAATGATGC
TCGAGGTTGCTCGACCAGGGGAAACTCGGACGCATGGAGGCCGCCCAAAT
GATGCTCGAGTTTCAGCAGGCCGCCGTACCCGGAAAAGACCCGGCGGGCG
GCCGCAGCGGTGGCGACCCCGTAGAACAAGGCGGGGGGGAGCAGGGCACG
GAGGCCGGGGAGGTAGACGTCGGAGGTGAAAATGAGTCCGGGCTGGCCCC
TCCCGGCTTGGCGAGACTTGCCGGTGACGACACCGCGCCACCGTTTCAGC
AGGCCGCCGTACCCGGAAAAGACCCGGCGGGCGGCCGCAGCGGTGGCGAC
CCCGTAGAACAAGGCGGGGGGGAGCAGGGCACGGAGGCCGGGGAGGTAGA
CGTCGGAGGTGAAAATGAGTCCGGGCTGGCCCCTCCCGGCTTGGCGAGAC
TTGCCGGTGACGACACCGCGCCACCG
back to top