mRNA_L-elsbetiae_contig6115.14672.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6115.14672.1
Unique NamemRNA_L-elsbetiae_contig6115.14672.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6115.14672.1 vs. uniprot
Match: D8LI55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI55_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.770e-28
Identity = 71/154 (46.10%), Postives = 89/154 (57.79%), Query Frame = 1 
Query:  115 NLRSSTATALSDPGQP-EKGVGSPGVNTSPYRIYKVETPNEDPMLEVVVSFSTKSTAAPISTAKTTAKAKHHCAKDAPQTPSCPCVKVSSDGGSIIMEHEPAAKGGDGDRDGATAGAVRGRFMLNLPQKVVPGTAMSFFWQGDLIVRATLVGVE 573
            N+ ++ A A  +  Q  EK   +P  +   YRIYK+E P EDP +E+V SFS  + AAPISTA+              +   CP VK+SSDG   ++E  PAA  GDG  DG    A +GRF L LPQ+VVP TAMSFF +G L VRATL   E
Sbjct:   98 NVSNAAANASRNHEQDDEKATDAPATSRPEYRIYKIEMPGEDPTVEIVCSFSDGNLAAPISTARKK------------RLSGCPSVKISSDGRKFVVERNPAADAGDGGGDGV---AEKGRFRLQLPQRVVPTTAMSFFRKGQLTVRATLATSE 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6115.14672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI55_ECTSI1.770e-2846.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6115contigL-elsbetiae_contig6115:8926..9739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005280.1
Exons2
Model size576
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.1927266-CDS-L-elsbetiae_contig6115:8925..91321622816669.1927266-CDS-L-elsbetiae_contig6115:8925..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6115 8926..9132 +
1691683726.8797667-CDS-L-elsbetiae_contig6115:8925..91321691683726.8797667-CDS-L-elsbetiae_contig6115:8925..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6115 8926..9132 +
1622816669.2083127-CDS-L-elsbetiae_contig6115:9370..97391622816669.2083127-CDS-L-elsbetiae_contig6115:9370..9739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6115 9371..9739 +
1691683726.8891509-CDS-L-elsbetiae_contig6115:9370..97391691683726.8891509-CDS-L-elsbetiae_contig6115:9370..9739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6115 9371..9739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6115.14672.1prot_L-elsbetiae_contig6115.14672.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6115 8926..9739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6115.14672.1

>prot_L-elsbetiae_contig6115.14672.1 ID=prot_L-elsbetiae_contig6115.14672.1|Name=mRNA_L-elsbetiae_contig6115.14672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
DYIQPKPRRIRIQLEDDDDDDNDDDDDDDDDDKTNRGWNLRSSTATALSD
PGQPEKGVGSPGVNTSPYRIYKVETPNEDPMLEVVVSFSTKSTAAPISTA
KTTAKAKHHCAKDAPQTPSCPCVKVSSDGGSIIMEHEPAAKGGDGDRDGA
TAGAVRGRFMLNLPQKVVPGTAMSFFWQGDLIVRATLVGVE*
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mRNA from alignment at L-elsbetiae_contig6115:8926..9739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6115.14672.1 ID=mRNA_L-elsbetiae_contig6115.14672.1|Name=mRNA_L-elsbetiae_contig6115.14672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=814bp|location=Sequence derived from alignment at L-elsbetiae_contig6115:8926..9739+ (Laminarionema elsbetiae ELsaHSoW15)
GATTATATTCAGCCGAAACCCCGGCGAATACGGATACAACTCGAAGACGA
TGACGATGACGATAACGACGACGACGACGACGACGACGACGACGACAAAA
CCAATAGGGGGTGGAATCTTAGATCATCAACGGCCACGGCTCTGTCAGAT
CCAGGACAACCCGAGAAGGGCGTGGGCTCGCCAGGGGTGAACACATCTCC
GTACAGGGTGAGTGCCGGGAGATGAACTGCGTGGCTGTCATGATTCAACA
CAGCAACGAAAGCCTACAACGTCTCGACCCATCCCAGAACTCTCCGTTAA
CTTCGGCATTACATAGAGGCGGAAGTTCCACATAAATTTCCACATAAATC
AATTTGCGAGATGTGCCAGGTTAACCGGTAGCCATGAGTAACATACATAT
TTCCTCTCGGCCCGCCAATCCTTTGCTCATGCCCGGTGAGCGCAGATTTA
CAAGGTCGAGACCCCCAACGAAGACCCAATGCTTGAAGTAGTCGTTTCTT
TTTCAACCAAGAGCACGGCGGCCCCCATCAGCACCGCCAAGACCACGGCC
AAGGCGAAGCATCATTGTGCAAAAGACGCGCCTCAAACTCCGAGTTGCCC
TTGTGTGAAGGTTTCATCCGACGGGGGGAGCATCATCATGGAGCATGAAC
CAGCGGCAAAGGGCGGCGATGGTGATAGAGATGGTGCTACTGCTGGGGCC
GTACGAGGTCGATTCATGTTGAATCTGCCACAGAAAGTGGTGCCTGGAAC
TGCGATGAGCTTCTTTTGGCAGGGCGATCTCATCGTTCGCGCTACGCTCG
TGGGGGTTGAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6115:8926..9739+

>mRNA_L-elsbetiae_contig6115.14672.1 ID=mRNA_L-elsbetiae_contig6115.14672.1|Name=mRNA_L-elsbetiae_contig6115.14672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig6115:8926..9739+ (Laminarionema elsbetiae ELsaHSoW15)
GATTATATTCAGCCGAAACCCCGGCGAATACGGATACAACTCGAAGACGA
TGACGATGACGATAACGACGACGACGACGACGACGACGACGACGACAAAA
CCAATAGGGGGTGGAATCTTAGATCATCAACGGCCACGGCTCTGTCAGAT
CCAGGACAACCCGAGAAGGGCGTGGGCTCGCCAGGGGTGAACACATCTCC
GTACAGGGATTATATTCAGCCGAAACCCCGGCGAATACGGATACAACTCG
AAGACGATGACGATGACGATAACGACGACGACGACGACGACGACGACGAC
GACAAAACCAATAGGGGGTGGAATCTTAGATCATCAACGGCCACGGCTCT
GTCAGATCCAGGACAACCCGAGAAGGGCGTGGGCTCGCCAGGGGTGAACA
CATCTCCGTACAGGATTTACAAGGTCGAGACCCCCAACGAAGACCCAATG
CTTGAAGTAGTCGTTTCTTTTTCAACCAAGAGCACGGCGGCCCCCATCAG
CACCGCCAAGACCACGGCCAAGGCGAAGCATCATTGTGCAAAAGACGCGC
CTCAAACTCCGAGTTGCCCTTGTGTGAAGGTTTCATCCGACGGGGGGAGC
ATCATCATGGAGCATGAACCAGCGGCAAAGGGCGGCGATGGTGATAGAGA
TGGTGCTACTGCTGGGGCCGTACGAGGTCGATTCATGTTGAATCTGCCAC
AGAAAGTGGTGCCTGGAACTGCGATGAGCTTCTTTTGGCAGGGCGATCTC
ATCGTTCGCGCTACGCTCGTGGGGGTTGAATAGATTTACAAGGTCGAGAC
CCCCAACGAAGACCCAATGCTTGAAGTAGTCGTTTCTTTTTCAACCAAGA
GCACGGCGGCCCCCATCAGCACCGCCAAGACCACGGCCAAGGCGAAGCAT
CATTGTGCAAAAGACGCGCCTCAAACTCCGAGTTGCCCTTGTGTGAAGGT
TTCATCCGACGGGGGGAGCATCATCATGGAGCATGAACCAGCGGCAAAGG
GCGGCGATGGTGATAGAGATGGTGCTACTGCTGGGGCCGTACGAGGTCGA
TTCATGTTGAATCTGCCACAGAAAGTGGTGCCTGGAACTGCGATGAGCTT
CTTTTGGCAGGGCGATCTCATCGTTCGCGCTACGCTCGTGGGGGTTGAAT
AG
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