mRNA_L-elsbetiae_contig611.14665.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig611.14665.1
Unique NamemRNA_L-elsbetiae_contig611.14665.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig611.14665.1 vs. uniprot
Match: D8LK28_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK28_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 8.180e-31
Identity = 76/159 (47.80%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:  220 AAALPEARTWMRKIDTNILNVDMAALSDEAPCATGDPTVCRGCQACLSAVSILTPVDIVGGS--SDAYDWACEYCHAVNRVVLDDMEKPVDGVLSVNHLIEGAPAAADKPDAGGAGXXXXXXXXXXXXTGTRKGKGKRSGKPKEDTSAVLFVIDTSDSM 690
            A A P +RTW RK+DTNILNVDMAAL + AP ATGD T+C  C+ACLSAVS+L PV    G+   D YDW CE+CH  NRV L   E PV G  SV++++E APA A                                    +D SAVLFVIDTS SM
Sbjct:  173 APAPPRSRTWTRKVDTNILNVDMAALGNAAPYATGDATICNDCRACLSAVSVLAPVSDDSGAVVEDVYDWTCEFCHKTNRVELGRGELPVVGQDSVDYVLEAAPATAAAXXX------------------------XXXXXXDQDESAVLFVIDTSGSM 307
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BLAST of mRNA_L-elsbetiae_contig611.14665.1 vs. uniprot
Match: A0A6T7CTJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CTJ1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.560e-17
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 1 
Query:  247 WMRKIDTNILNVDMAALSDEAPCATGDPTVCRGCQACLSAVSILTPVDIVGGSSDAYDWACEYCHAVNRVVLDDMEKPVDGVLSVNHLIEGAPAAADKPDAGGAGXXXXXXXXXXXXTGTRKGKGKRSGKPKEDTSAVLFVIDTSDSM 690
            + RK+DTN++N+++  ++  A  ATG+   C GC AC S +S LT +     S D Y+W CE+C A   + LD+ E P  GV SV+++IE  PAAA +   GGAG                   G  +G        VLFV+DTS SM
Sbjct:  102 YHRKVDTNVMNINLGTITSTAAIATGEANECSGCGACASNLSTLTKLK---ASDDTYEWKCEFCGASQVLELDEAELPAAGVNSVDYIIE--PAAATEVGTGGAGGAVDA--------------GADAG------GLVLFVVDTSGSM 224
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BLAST of mRNA_L-elsbetiae_contig611.14665.1 vs. uniprot
Match: J9IES7_9SPIT (Type A von Willebrand factor domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IES7_9SPIT)

HSP 1 Score: 63.9 bits (154), Expect = 3.680e-8
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:  241 RTWMRKIDTNILNVDMAALSDEAPCATGDPTVCRGCQACLSAVSILTPVDIVGGSSDAYDWACEYCHAVNRVVLDDMEKPVDGVLSVNHLIEGAP 525
            R + +++DTN+  + M  L + A  ATGDP  C GCQA  +  S +          D   W CE+C+  N + L+  E P     +VN++IE AP
Sbjct:  265 RKYKQEVDTNVFQISMKCLKENAEIATGDPVYCEGCQAMFNKHSQIEK------DGDKQVWICEFCNHKNNIQLEQEEIPKTD--TVNYIIEAAP 351
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BLAST of mRNA_L-elsbetiae_contig611.14665.1 vs. uniprot
Match: A0A8J8P035_HALGN (VWFA domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P035_HALGN)

HSP 1 Score: 60.5 bits (145), Expect = 4.900e-7
Identity = 42/149 (28.19%), Postives = 69/149 (46.31%), Query Frame = 1 
Query:  247 WMRKIDTNILNVDMAALSDEAP-CATGDPTVCRGCQACLSAVSILTPVDIVGGSSDAYDWACEYCHAVNRVVLDDMEKPVDGVLSVNHLIEGAPAAADKPDAGGAGXXXXXXXXXXXXTGTRKGKGKRSGKPKEDTSAVLFVIDTSDSM 690
            + +K+DTN+  V MA L D+A   ATGDP  C  C   L+   + + + + G +     W CE+C+  N V ++  EKP    +S  +++E AP  ++                        K + K +G   +D S ++F +D S SM
Sbjct:   23 FRQKVDTNVFQVSMACLKDQATEIATGDPITCSACSGILN---VYSEIKVEGDAQQV--WICEFCNTRNVVNIEPEEKPKTDAVS--YILEAAPVKSE----------------------AEKKEEKTTGGVNKDIS-IVFCVDVSGSM 141
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig611.14665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LK28_ECTSI8.180e-3147.80VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6T7CTJ1_9STRA2.560e-1737.84Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
J9IES7_9SPIT3.680e-834.74Type A von Willebrand factor domain-containing pro... [more]
A0A8J8P035_HALGN4.900e-728.19VWFA domain-containing protein n=1 Tax=Halteria gr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig611contigL-elsbetiae_contig611:11993..14873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D8LK28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.von Willebrand factor (vWF) type A domain
EggNOG OGs29A2H@1,2RH4Z@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size692
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig611.14665.1prot_L-elsbetiae_contig611.14665.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig611 12041..14873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.584262-UTR-L-elsbetiae_contig611:11992..120401622816668.584262-UTR-L-elsbetiae_contig611:11992..12040Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig611 11993..12040 +
1691683726.4455125-UTR-L-elsbetiae_contig611:11992..120401691683726.4455125-UTR-L-elsbetiae_contig611:11992..12040Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig611 11993..12040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.5977626-CDS-L-elsbetiae_contig611:12040..122501622816668.5977626-CDS-L-elsbetiae_contig611:12040..12250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 12041..12250 +
1691683726.462081-CDS-L-elsbetiae_contig611:12040..122501691683726.462081-CDS-L-elsbetiae_contig611:12040..12250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 12041..12250 +
1622816668.6112628-CDS-L-elsbetiae_contig611:13769..139231622816668.6112628-CDS-L-elsbetiae_contig611:13769..13923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 13770..13923 +
1691683726.4775405-CDS-L-elsbetiae_contig611:13769..139231691683726.4775405-CDS-L-elsbetiae_contig611:13769..13923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 13770..13923 +
1622816668.6245275-CDS-L-elsbetiae_contig611:14455..146851622816668.6245275-CDS-L-elsbetiae_contig611:14455..14685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 14456..14685 +
1691683726.487309-CDS-L-elsbetiae_contig611:14455..146851691683726.487309-CDS-L-elsbetiae_contig611:14455..14685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 14456..14685 +
1622816668.63812-CDS-L-elsbetiae_contig611:14825..148731622816668.63812-CDS-L-elsbetiae_contig611:14825..14873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 14826..14873 +
1691683726.4989264-CDS-L-elsbetiae_contig611:14825..148731691683726.4989264-CDS-L-elsbetiae_contig611:14825..14873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig611 14826..14873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig611.14665.1

>prot_L-elsbetiae_contig611.14665.1 ID=prot_L-elsbetiae_contig611.14665.1|Name=mRNA_L-elsbetiae_contig611.14665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp
MNFGSKFALHDDSGEEQIVREEDMAAGPLGAPTPIPPAQAGDAVLPPAPP
QPRATGAAAALPEARTWMRKIDTNILNVDMAALSDEAPCATGDPTVCRGC
QACLSAVSILTPVDIVGGSSDAYDWACEYCHAVNRVVLDDMEKPVDGVLS
VNHLIEGAPAAADKPDAGGAGGAAASAATAAATTGTRKGKGKRSGKPKED
TSAVLFVIDTSDSM
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mRNA from alignment at L-elsbetiae_contig611:11993..14873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig611.14665.1 ID=mRNA_L-elsbetiae_contig611.14665.1|Name=mRNA_L-elsbetiae_contig611.14665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2881bp|location=Sequence derived from alignment at L-elsbetiae_contig611:11993..14873+ (Laminarionema elsbetiae ELsaHSoW15)
TCTACATAGAATACCCTGTAACTCTCATTGCTCTGGTGGTGCACCATCAT
GAACTTTGGAAGCAAGTTTGCGCTTCATGATGACTCCGGCGAAGAGCAGA
TAGTCAGGGAGGAAGACATGGCTGCGGGGCCGCTCGGTGCGCCGACTCCA
ATCCCTCCCGCCCAGGCCGGTGATGCCGTGCTGCCTCCTGCCCCCCCTCA
GCCCCGTGCTACTGGCGCCGCCGCAGCTTTACCGGAGGCGAGGACGTGGA
TGCGCAAGGTGTGTTGGTTATATTTCAAGTTTACATGTAGACCGTGCCTC
CTGCAGCGCGTCCGAGAGCGCCGAATGTAACATCTCTACAAGACTAGATA
TGTAGATAGATATCCTACTCCGCGAGGCACAGATGCGTGCTGGGAGCGGA
GAAAGCATTGGATCTGCATACCGGCGAGCGCTCTGAAAGCGCTGTATACA
TGCGGTGGTGTGAGAGCAAAGCACGAACCCCAGCACGGGTGTATTTGTTT
GTATTACCTAAATGTGACTAACGGCGTCCCCATCTTTGAAAGCAACGAAC
GTGCTCTGATGCGGAAACCAGTAAAAGGCGGGCACCGGGACCAGGAAGGG
CTGAGAGGCTAGACTAGTCTACAACATAGTCTTGTGTACCCTCCCGGCCC
TTCACTAAGGGGTTGATTGTTGTTTAGTTTCTAGACTGAGCCGCAAGCGC
ACCATGGTTCTTGACAAGATTGCCTGTTGTACAAGGCCCCGGACTCGGGG
GCCTGCCGGCCCCCTTCGTCCTCCGACGAAGGATTTCGGTTTGTGATGTT
TTATTATTGATGAGTTCGACTGGAGGAGAAGAAATATCGCATACCAAGGC
GTTCAGCGGGTATGTTGACACGAGCCGACAGGACGGCCGAACTCTGTGTC
GGTGTTGAGTTGAGGACGTCATCCGAATATAGAAGAGGATATCGGCGGAA
TGGGCGTTGTACTGCAAACGCTGGGGCGTGCGTGTTTTACTTTTTACCGG
TTGGCAGGTGTACGAAATAACTCGGACGCACGTATCACACAGCAAACACA
TACATGCATGCCTGTGCGCGTGACGAAAACAAACACCACATGTAGATACC
CCCTGTAAATACCCCAAGCGCCCACGACGAGGCTAAAGAGGTTGCACACG
CGAACAGCTGATCAGCTCATTAGATAGTCGGCTAAATACAGACACTTTTG
ATTTGATAGACGTTTCGCGAGTTGGTCGAGTGAAGAAGGTGCGCCCGGAG
AGCCTATGCAGCAGACGCGCAAATAGCGTTGGTAGGGATGCCAGAGATGC
CAATTTCACCGCCCACGCGCAAACTCGCTGTGGGTCTCGCCGAGAGGGCA
CATCTCGCACGCATGACCCGCGCCGTCCAGGGCTGCGGCAAACCGCAAAA
CCCGGAGCGAATACCGTCCCGGAAGGGCGTGAAGCCGCCGTAAAGGGCTT
CTCGGGGCAAGGGGCGCACAGTATGTGTTCTGAAAGGGGGGCCTCAAAGA
GCGACCCAGATTCTAAATATTCCGTTTGAGTTAAAAATGCCTTCTGCACG
TTGTACTGCATATAGATACACAACAGTACTCCATATGTAGCAGTCTGGAT
GTATTTCTGCATGTGGTGACGGTCACCTTGTTGTGCACCACCGCCGGCGT
GGCCCCTTCCGTGGCGAGAAAGCAAGCTTGCTCCTCCCCCTTTAGAGGAA
ATGCGCCCCACTCTCATCGCCGTGACCGTTACGTACCCCATCCGCCGCCC
CGCGCGCGGTGTTCCGACGCGAAACAGATCGACACGAACATCCTCAATGT
TGACATGGCTGCCCTCAGCGATGAAGCACCCTGCGCAACAGGGGATCCGA
CTGTTTGCCGCGGTTGCCAGGCGTGCCTCAGTGCCGTTTCGATCCTTACC
CCCGTGGACATCGTCGGAGGCAGCAGCGACGGTGCGCTTATTTTGCCGGC
AATGATAGAAACGGGAGTAGATGGGAAGACCAGCGACCCATGAAAAACAA
GCAGGCTCTCGAATGGCTAAATAACGAACGGCCGCATGCACCGGAGATTG
CAAAGCCGCGGCTACCGTACAGGAACAAACAGGCGCAGTTTATCTGCAGC
CCTGCAGCTACATGCCTTGGCACGCAGGTCCCTGCGGGATCGTCAGTCTA
CTGTGGCGAGATGATACACCACTTTTGTCCCGAAAGTGTATGTTCGCTGT
GCCCTAGATATGTGTTGTGTCATTTGCAGCGGGAGGCTAGAACGCGGATA
GATTGATGTGCGCCTAGAAGCACACATACCAAAGAGGTACATGCTTCAAC
GACGTGATACACCAAGTCCAAATGCCCTTGGATCAACAAACTTCTGCGAC
CTTGAGCCACTCCTCCTGCCGCAGGCGTGAAGTTTTGTTTTTCCAAAGAC
ACGAAGACACGCCAACTGACCAAGTGAACCCGACGTTTCCCTTCCGCCCC
ACCGCCCCTGCAGCGTACGATTGGGCTTGCGAGTACTGCCACGCGGTCAA
TCGCGTCGTGCTGGACGATATGGAGAAGCCCGTCGACGGCGTTCTGAGCG
TCAACCACCTCATCGAGGGAGCGCCCGCCGCTGCCGACAAGCCTGATGCG
GGTGGTGCGGGTGGCGCGGCGGCTTCTGCCGCCACCGCCGCCGCCACCAC
GGGAACGAGGAAAGGGAAAGGGAAGCGCAGTGGAAAACCCAAGGTGGGCT
AGCCGGTCACTTTGAAATTGTTTTGGGCTCTCTCTCACGCCAAATTCAAA
CGAAAGGATATGAAATCGAAAAATCATACTTCGTGTTTCTAATTGACGTG
TGATACTCGACACAAACGCACGCACACACACAGGAGGACACATCAGCGGT
GCTTTTCGTCATCGACACGAGCGATTCCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig611:11993..14873+

>mRNA_L-elsbetiae_contig611.14665.1 ID=mRNA_L-elsbetiae_contig611.14665.1|Name=mRNA_L-elsbetiae_contig611.14665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig611:11993..14873+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTTTGGAAGCAAGTTTGCGCTTCATGATGACTCCGGCGAAGAGCA
GATAGTCAGGGAGGAAGACATGGCTGCGGGGCCGCTCGGTGCGCCGACTC
CAATCCCTCCCGCCCAGGCCGGTGATGCCGTGCTGCCTCCTGCCCCCCCT
CAGCCCCGTGCTACTGGCGCCGCCGCAGCTTTACCGGAGGCGAGGACGTG
GATGCGCAAGATGAACTTTGGAAGCAAGTTTGCGCTTCATGATGACTCCG
GCGAAGAGCAGATAGTCAGGGAGGAAGACATGGCTGCGGGGCCGCTCGGT
GCGCCGACTCCAATCCCTCCCGCCCAGGCCGGTGATGCCGTGCTGCCTCC
TGCCCCCCCTCAGCCCCGTGCTACTGGCGCCGCCGCAGCTTTACCGGAGG
CGAGGACGTGGATGCGCAAGATCGACACGAACATCCTCAATGTTGACATG
GCTGCCCTCAGCGATGAAGCACCCTGCGCAACAGGGGATCCGACTGTTTG
CCGCGGTTGCCAGGCGTGCCTCAGTGCCGTTTCGATCCTTACCCCCGTGG
ACATCGTCGGAGGCAGCAGCGACGATCGACACGAACATCCTCAATGTTGA
CATGGCTGCCCTCAGCGATGAAGCACCCTGCGCAACAGGGGATCCGACTG
TTTGCCGCGGTTGCCAGGCGTGCCTCAGTGCCGTTTCGATCCTTACCCCC
GTGGACATCGTCGGAGGCAGCAGCGACGCGTACGATTGGGCTTGCGAGTA
CTGCCACGCGGTCAATCGCGTCGTGCTGGACGATATGGAGAAGCCCGTCG
ACGGCGTTCTGAGCGTCAACCACCTCATCGAGGGAGCGCCCGCCGCTGCC
GACAAGCCTGATGCGGGTGGTGCGGGTGGCGCGGCGGCTTCTGCCGCCAC
CGCCGCCGCCACCACGGGAACGAGGAAAGGGAAAGGGAAGCGCAGTGGAA
AACCCAAGCGTACGATTGGGCTTGCGAGTACTGCCACGCGGTCAATCGCG
TCGTGCTGGACGATATGGAGAAGCCCGTCGACGGCGTTCTGAGCGTCAAC
CACCTCATCGAGGGAGCGCCCGCCGCTGCCGACAAGCCTGATGCGGGTGG
TGCGGGTGGCGCGGCGGCTTCTGCCGCCACCGCCGCCGCCACCACGGGAA
CGAGGAAAGGGAAAGGGAAGCGCAGTGGAAAACCCAAGGAGGACACATCA
GCGGTGCTTTTCGTCATCGACACGAGCGATTCCATGGAGGACACATCAGC
GGTGCTTTTCGTCATCGACACGAGCGATTCCATG
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