mRNA_L-elsbetiae_contig609.14627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig609.14627.1
Unique NamemRNA_L-elsbetiae_contig609.14627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 4.970e-125
Identity = 192/195 (98.46%), Postives = 193/195 (98.97%), Query Frame = 3 
Query:  150 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEAR YAEDNGLIHMETSAKSAQNVK+IFVEIAQKLPKATVQPEREAFPIMRPRTE KSGCC
Sbjct:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 195
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A835Z7I1_9STRA (Rab5, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I1_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.330e-105
Identity = 166/191 (86.91%), Postives = 177/191 (92.67%), Query Frame = 3 
Query:  162 RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            RVCHFKLVLLGDTAVGKSCLVVRFVR+EFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK+SFNGAKSWVKELQRRGDPNV+IALAGNKADLE RRQV  EEA  YAE+NG+IHMETSAKSA NVK+IFVEIA++LPKA  QPEREAFPIM PR + K+G C
Sbjct:    3 RVCHFKLVLLGDTAVGKSCLVVRFVRNEFFEFQEPTIGAAFLTQTVGLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKDSFNGAKSWVKELQRRGDPNVVIALAGNKADLEGRRQVHFEEAHAYAEENGIIHMETSAKSALNVKSIFVEIAKRLPKAGAQPEREAFPIMPPRRDKKAGGC 193
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: F0YJN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN)

HSP 1 Score: 324 bits (831), Expect = 1.200e-103
Identity = 158/195 (81.03%), Postives = 181/195 (92.82%), Query Frame = 3 
Query:  150 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TNKESFNGAKSWVKELQRRGDPNVIIALAGNKADL+++R+V+SEEA+QY+E+NG++HMETSAK+A +VK++F EIA+KLPK   QPER+AFPI+ P+      CC
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRRVESEEAKQYSEENGILHMETSAKNATHVKDLFQEIARKLPKTPPQPERDAFPIIPPKHNENKVCC 195
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A6V1MPB5_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK)

HSP 1 Score: 320 bits (819), Expect = 7.080e-102
Identity = 163/195 (83.59%), Postives = 174/195 (89.23%), Query Frame = 3 
Query:  150 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L +ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK+SFNGAKSWVKELQRRGDPNV+IALAGNK DLE RRQV  EEA  YA +NG+IHMETSAKSA NV+ IF++IA+KLPK   Q ERE FPIM P+ E K GCC
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQTVSLPEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKDSFNGAKSWVKELQRRGDPNVVIALAGNKCDLEPRRQVPFEEAAAYAAENGIIHMETSAKSAHNVQQIFLDIAKKLPKNPPQVEREVFPIMPPKRESK-GCC 194
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A7S1ZIQ9_TRICV (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZIQ9_TRICV)

HSP 1 Score: 316 bits (809), Expect = 9.350e-100
Identity = 156/192 (81.25%), Postives = 174/192 (90.62%), Query Frame = 3 
Query:  156 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGC 731
            S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LD+ATVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YAE+NG++H+ETSAK+A NVK +FVEIA+KLPK   QPEREAFPI+ P+ E +S C
Sbjct:   45 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPDSFAGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYAEENGILHLETSAKNASNVKALFVEIAKKLPKTPPQPEREAFPIVTPKQENRSCC 236
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A7S2RYM3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYM3_9STRA)

HSP 1 Score: 314 bits (804), Expect = 1.290e-99
Identity = 154/196 (78.57%), Postives = 179/196 (91.33%), Query Frame = 3 
Query:  150 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRT-EPKSGCC 734
            M++ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TNK+SFNGA+SWVKELQ+RGDPNV+IALAGNK+DLEH+R+V++EEA  YA +NG++HMETSAKSA NVK++FVEIA+KLPK   +  REAFPI+ P+T + +  CC
Sbjct:    1 MAANRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNKDSFNGARSWVKELQKRGDPNVVIALAGNKSDLEHKRKVETEEAEAYALENGILHMETSAKSATNVKSLFVEIARKLPKNPPETPREAFPIIPPKTSQSRRQCC 196
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: T0Q598_SAPDV (Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q598_SAPDV)

HSP 1 Score: 313 bits (802), Expect = 2.570e-99
Identity = 160/196 (81.63%), Postives = 173/196 (88.27%), Query Frame = 3 
Query:  150 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            M+S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK+SF GAKSWVKELQRRGDPNVIIALAGNKADLE RR+V  EEARQYAE+N ++HMETSAK+A NVK++FV IAQKLPK   QPER+AFPI       K+GCC
Sbjct:    1 MASNKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVSLDDGMTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKDSFTGAKSWVKELQRRGDPNVIIALAGNKADLEARRKVDLEEARQYAEENEILHMETSAKTAVNVKDLFVAIAQKLPKNPQQPERDAFPITPVTPPKKNGCC 196
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A6U2XTP3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2XTP3_9STRA)

HSP 1 Score: 313 bits (802), Expect = 2.950e-99
Identity = 155/191 (81.15%), Postives = 175/191 (91.62%), Query Frame = 3 
Query:  162 RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            R+ HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLD++TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TN +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YA +NGL+H+ETSAK+A NVK++FVEIA+KLPK   +PEREAFPI+ P+T+ KS CC
Sbjct:   11 RIHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYATENGLLHLETSAKNANNVKSLFVEIAKKLPKQEPEPEREAFPIL-PQTQEKSNCC 200
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A5D6XMY9_9STRA (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=A0A5D6XMY9_9STRA)

HSP 1 Score: 313 bits (801), Expect = 3.880e-99
Identity = 160/198 (80.81%), Postives = 175/198 (88.38%), Query Frame = 3 
Query:  150 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEP--KSGCC 734
            M+ G+ CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK+SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA QYAEDN ++HMETSAK+A NVK++FV IA++LPK   QPEREAFPI  P  +   KSGCC
Sbjct:    1 MAQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVGLDDGLTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKDSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPHQPEREAFPITPPTNQKQNKSGCC 198
[Close]
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Match: A0A1Z5KAE2_FISSO (Ras-related protein Rab-5C n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAE2_FISSO)

HSP 1 Score: 313 bits (801), Expect = 4.610e-99
Identity = 159/202 (78.71%), Postives = 177/202 (87.62%), Query Frame = 3 
Query:  129 STLHPSDMSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC 734
            S + PS  ++ RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLDDA VKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TN +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YA +NGL+H+ETSAK++ NVK +FVEIA+KLPK   QPEREAFPIM P+   K GCC
Sbjct:    3 SNIGPSSPAASRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDDAMVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNPDSFAGAKSWVKELQRRGDPNVVIALAGNKADLEGRRKVEFEEAAAYAAENGLLHLETSAKNSNNVKALFVEIAKKLPKNPPQPEREAFPIM-PQQPEKQGCC 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig609.14627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC7_ECTSI4.970e-12598.46Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7I1_9STRA1.330e-10586.91Rab5, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
F0YJN1_AURAN1.200e-10381.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6V1MPB5_HETAK7.080e-10283.59Hypothetical protein n=2 Tax=Chattonellaceae TaxID... [more]
A0A7S1ZIQ9_TRICV9.350e-10081.25Hypothetical protein n=3 Tax=Mediophyceae TaxID=58... [more]
A0A7S2RYM3_9STRA1.290e-9978.57Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
T0Q598_SAPDV2.570e-9981.63Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae Ta... [more]
A0A6U2XTP3_9STRA2.950e-9981.15Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A5D6XMY9_9STRA3.880e-9980.81Uncharacterized protein n=23 Tax=Oomycota TaxID=47... [more]
A0A1Z5KAE2_FISSO4.610e-9978.71Ras-related protein Rab-5C n=1 Tax=Fistulifera sol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig609contigL-elsbetiae_contig609:1096..7275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score385.6
Seed ortholog evalue1.4e-104
Seed eggNOG ortholog2880.D7FJC7
Preferred nameVPS21
KEGG koko:K07889,ko:K17785
KEGG Pathwayko04014,ko04144,ko04145,ko04962,ko05146,ko05152,map04014,map04144,map04145,map04962,map05146,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006906,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019867,GO:0022411,GO:0022607,GO:0023052,GO:0030139,GO:0031090,GO:0031410,GO:0031901,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032386,GO:0032509,GO:0032511,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033365,GO:0034058,GO:0034613,GO:0035556,GO:0035639,GO:0036010,GO:0036094,GO:0036257,GO:0036258,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048284,GO:0048308,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090087,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901265,GO:1901363,GO:1903008,GO:1903827
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0092@1,KOG0092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04031,ko04131,ko04147
Ec32 ortholog descriptionRab5, RAB family GTPase
Ec32 orthologEc-14_005840.1
Exons5
Model size2203
Cds size588
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.54255-UTR-L-elsbetiae_contig609:1095..25611622816664.54255-UTR-L-elsbetiae_contig609:1095..2561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig609 1096..2561 -
1691683723.387978-UTR-L-elsbetiae_contig609:1095..25611691683723.387978-UTR-L-elsbetiae_contig609:1095..2561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig609 1096..2561 -
1622816664.606151-UTR-L-elsbetiae_contig609:7126..72751622816664.606151-UTR-L-elsbetiae_contig609:7126..7275Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig609 7127..7275 -
1691683723.4475722-UTR-L-elsbetiae_contig609:7126..72751691683723.4475722-UTR-L-elsbetiae_contig609:7126..7275Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig609 7127..7275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.5539143-CDS-L-elsbetiae_contig609:2561..26531622816664.5539143-CDS-L-elsbetiae_contig609:2561..2653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 2562..2653 -
1691683723.4031255-CDS-L-elsbetiae_contig609:2561..26531691683723.4031255-CDS-L-elsbetiae_contig609:2561..2653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 2562..2653 -
1622816664.5660641-CDS-L-elsbetiae_contig609:3231..33411622816664.5660641-CDS-L-elsbetiae_contig609:3231..3341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 3232..3341 -
1691683723.4113948-CDS-L-elsbetiae_contig609:3231..33411691683723.4113948-CDS-L-elsbetiae_contig609:3231..3341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 3232..3341 -
1622816664.5760982-CDS-L-elsbetiae_contig609:4465..45721622816664.5760982-CDS-L-elsbetiae_contig609:4465..4572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 4466..4572 -
1691683723.4197857-CDS-L-elsbetiae_contig609:4465..45721691683723.4197857-CDS-L-elsbetiae_contig609:4465..4572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 4466..4572 -
1622816664.586385-CDS-L-elsbetiae_contig609:5565..57171622816664.586385-CDS-L-elsbetiae_contig609:5565..5717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 5566..5717 -
1691683723.4283032-CDS-L-elsbetiae_contig609:5565..57171691683723.4283032-CDS-L-elsbetiae_contig609:5565..5717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 5566..5717 -
1622816664.5966237-CDS-L-elsbetiae_contig609:6999..71261622816664.5966237-CDS-L-elsbetiae_contig609:6999..7126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 7000..7126 -
1691683723.4377806-CDS-L-elsbetiae_contig609:6999..71261691683723.4377806-CDS-L-elsbetiae_contig609:6999..7126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 7000..7126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig609.14627.1prot_L-elsbetiae_contig609.14627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig609 2562..7126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig609.14627.1

>prot_L-elsbetiae_contig609.14627.1 ID=prot_L-elsbetiae_contig609.14627.1|Name=mRNA_L-elsbetiae_contig609.14627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKV
QLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAK
SWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMET
SAKSAQNVKNIFVEIAQKLPKATVQPEREAFPIMRPRTEPKSGCC*
back to top

mRNA from alignment at L-elsbetiae_contig609:1096..7275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig609.14627.1 ID=mRNA_L-elsbetiae_contig609.14627.1|Name=mRNA_L-elsbetiae_contig609.14627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6180bp|location=Sequence derived from alignment at L-elsbetiae_contig609:1096..7275- (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCCAGAGGTTCTTATCTCTCAGCGGAGGTTCGGCGCTGACAGCAAC
AAGCAGCCTCCTGTTTCCCCCCAGGCGGCCGCGGGGCAGAGAGAAAAGAG
CAGCGACGACAACAACGGGATACAATCCAGCACGCTCCATCCCAGCGACA
TGTCTTCGGGGAGAGTGTGCCACTTCAAGCTCGTCTTGCTCGGAGACACG
GCGGTGGGGAAGTCTTGTCTCGTCGTGCGTTTCGTTAGGGACGAGTTCTT
CGAGTACCAGGAACCGACGATCGGAGGTGAGAGGGGAAGGAGGGGAAGCG
GCCGGCCCGTTTGCCTGCGTCTCAAGCCAGTTGGTCGGCCAATGACCTCG
CATCCCTTTCGAGATGGAGCACCGTTCCTACTTCCCAACACATCTGAATG
TACAAAGATAGTAACCAACAACTGAGATGTGCTCTTTGCTTATGTACATC
CACATGTACTTATGTCCAAAGTCATCAGTCATGTGTTTCTTTCCTGGAAC
GTGTGGGCAACCTAACTGCCGAGTCTTCCCACCGGGACGGGCACGGGCAT
ACCGGTTTGCACAAAGAAGCGACGGCAGCTCCCCGCCTCCGGTGGGCCGA
CTCGCCTCTCCACTCTCCACCAGCACAGCCCCGGGGTCACAAAGCCCCCC
ATCACCTCTCTGCCGCACCGCCGCACGCCTCGAAAACCACTTTCTCTTCG
GCTTTCGGCACGCAATTTTTGGCATACGGCAGTGGAGTCCTGGTCAAGGT
TGGGGCAGAGGTAGATTTTGGTCGGTTGTCAAATGTGAAACCGCTGCAAG
AATGTCAGGGAACGGCGCCCATAGTCCCGCAAGGTTCGGCAACCCTTCGG
CGCAGTAAGTCTAGGGGGGAAACCCAGCTTTCAGTATGGCTGCAGGGCGA
GGCAACCAAAAAGGCCATTTGGTTAAGCAGAGTTGGGGGGGGATTCCGTA
CGAGTTTTTACAGGTCTACGTTGTTGTCCTGATACATATCAGGGAACAAC
GAAGGTAGTGCCAGTAATCCAACCACACACAAAGTCCATGTCCCGATTAG
AACAGCAGCATTATTGCAGCAATGGGCTCAGCCCGACCACGAACTCAAGC
GTCTTCCAGGGGTGCGCGCAGCGGCAGTATAGATAGCCATGCAGGTGGGG
CACCGGCCGGCAACAGTTTTGACTACTGCTGGGCCGGTGAAGCTCTCTCC
GTTCACCTTCACGTTTTGTTCGGCAGGCCTTTTGTACGGGCGATTTGCCG
TTGATTGGTTTTTAAATCTTGTTTTGCTCGCTGTGAGCGGTGGCGAAAGG
CAGGTGGTGAGCTACGGTACCGTGGATCTATCGTTACGTCACGCTTGGTT
TTTCGGCCCTGTAGAACCTGTTGTATCCAAAATCTGAGCGACTTCCAGCC
GCATCTTGTCCAGCATTCTCCGATTCCAAGGGTGCAGAGTCCCTTATTTA
GCGCTCAGACGTTTTCCACCGACCCCCTCGCGCCGCCGCCGCCGCGCTGT
TGTCGTTGTCGGTGCTGTTGTTTTTGCTGCTGCTGCTTCATCACTCGTCT
CCACACAGCGGCGTTCCTGACGCAGAAGGTGCAGCTGGATGACGCGACCG
TTAAATTCGAGATTTGGGATACGGCCGGGCAGGAGCGATACCGCAGCCTG
GCGCCCATGTACTACCGGGGGGCGGCGGCGGCGATCGTGGTGTACGACGT
TACGAACAAGGCAAGAAGCAACCACTTAACCTAAGCCGTGTTCGGGTGGT
CCATTAGATAGAATGGACCGGGCGAGCTGTTCGGCGATGCACTGGAATGA
AAGCGACTGCTGCTACCTACTGCTGTGCAGTGTCTCTCCGCCGTAATACT
GGCAAATGCTGAGGGCGGCTGGCGAGGGGCGCCGTGTGTTCCGGACTCTT
CCAGTGCTGTCGCACAACGATTTGTGGCTTGCGGCCCTCAACCGAGTCAG
CCTAGTTTTATGCTTCGAAGTATACATTTAGTTGCATGCAAGATGCGGAA
TGAGTTTGGGGGCGGGGGCCACGCAACGTGTGGAGTGTTGTTTTGGGGTG
CGTAGTAGATTTTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGACCGCTGACAATGGGGGTGTAGGGCAGGTACTCCTGGGGTTTCCGTTT
CTCTCTTTTGTGGTCGGAACTAAAACTATTATACTGCTGGGTATTGGGTA
TGTCGGCGTTCATCCCAACCGGCGAGAACGCGCGCCCTGCTCTCGGGGCC
GTCACCCGCCCCGTGGCTCGTTCGCCGACGTCGCCGCACGTACTTGAGCT
CTACGCGGCACGCGGCTTTTACCCCAAGTGCTGCAGCGTTGCCGCGGTTG
CCGTTGAGCTGTGTAGCTCTGTCCACGAAGCGGAGTAGTAGCGCCCCTCC
CTTGCTGTGTGTGTTGATGTTTCGTGCTGCCTGCTCTGAGCAGTATGACT
GGTGTTTTTTGTTAGGAGGGGGTGGGGTGATAGGCCGCGATTTTACTCGG
TTGCGGGCCCCCAGTGGCGACCCGAGGAAATCGATAGCCAAGCTCCAATT
GAGGACCGAACCAGGATCACGCCACGATGGCCTGGTGTTATTTTTCAGGG
GTGGTTTGGTTGAAACGATTCCTTTTGATCGTAGTGCGCCGGTCTTTTTT
GTCTCACGTGTGTGTGCCCCGTGTCTGTCCTTCCTTGTGACAATACTTCG
CAGGAGTCTTTCAACGGAGCCAAGTCATGGGTGAAGGAGCTGCAGCGTAG
AGGAGACCCGAACGTGATTATCGCGCTCGCAGGGAATAAGGCCGATCTCG
AGCACCGCCGGTGAGACTGCATACCTTGCATTACTAGACGAGGTGTTGTT
TCATTTGAGCGTGGTTGTTGGTGCGGGTGGGTGGTGTATTCCTCAATTTC
AAGGGCCGCTCCAACTTCTTCCAAATATCCGAGGGTTTTAGCTTAATATC
CCGTCATTTAGGCGATGAATCCGTTTTTGTGACGCAGCATGACCTACGCG
CGCTTGTCAAGGCTTTATTTTCATGCCAGTGTTAAGAGGTTGAAAGCCTG
TGTCTGCATGAAGCAGGCTATTTATCGGTATTTTTTTTTCGTCAACATAC
ATACATGTATTCTGAAACGCGATTGCTTCGGCGAGCGATCTCTCCGCGCC
GAGCATCTGCGATGGTTTGCACCGAAACATGTTAGACTGGACGTAGATTG
ACGCCTCTAGTCCTTGTCCGGGTGTTTTTTGCTGGGACTTAAACTTGTGC
TTGCTCGACTGCATCAAACTGTGTGGTGCAAACATGTGTTTATGTAGCTA
TTGTTTTCCCCACGCGATGTAGAAAGTTCACACCGCCTTGTTGTTGCCCC
CAAGGTATCGGCCTCCGCTCAGCGATCAGCGTTTTAGTATGATGGCAACC
ATCGTGGTTCGGTTTTGGTCCATTCTATGTACGAATTTCCCCCGCCCATA
TAAGTGTAGAGACACGCATGCCAGCGCTTTGGCTGACCGTGGCGTGACCC
TTTGAAGGCTGGCAAGTGCTGGAGTGACGTGACGAGGGGGGTGTATGCGG
TGCGCCACGCGGAGCCAGCACCACCTCGCTGGGCACATTCGAGGCTGATA
GGGAACGGGCAGCACCTTGTCCCATTGTATGGTTCGGTATCTTGCTTGCG
GGGGTGTTGGTCGTTGTTGGGTCGAATCACTACTGTAGCTGAGAGGAAGC
AAAGCCGTGACGTTACGATGTACAAGGGCACGATATGTATGAACCTTTGT
CGTTGGCCTTCCTCCGCCCCTCGCTCTTCTCCTCCGGGTTGTCTCCCGCA
AAGGGTGCACGGGCGGGCGAACGTGCTAAGTCCACCACAGAGACGATTTT
TTGTCCCCTCCCTCCCTCCCTTTTTCTCCCTCCTTCCTCCCTCCATCGAA
ACCCACCCCCCTTAATTGTCTCCTGTTGTTTCAGGCAGGTACAGTCGGAA
GAAGCGCGCCAGTACGCGGAGGACAACGGGCTTATCCACATGGAAACCTC
GGCAAAGAGCGCGCAAAACGTCAAGAACATCTTCGTCGAGATTGGTGAGT
GTGAGAGGGGGGGGGGGGGGGGGGGGGGTTGTGTTTTCTCGTGTGTAGCG
TTCGTTGGATGCATGCAGTCTAAAACAGGGACAGCGCGTGGTTTTGCGAG
CTTGCGAACCTCCTTCCCCCTTTGGATTGTATAGGATGTTTTCGTGAGGT
GGAAAATAGGCGAACGGGTCGCCCTCTCAGGACCATGCGTAACCACTACT
TACCTGCGCGCGCGCGCTCAGAACTGATGTGTTTTTATTGGTTGGCCGGT
TAACAGCGCGGTCGATGCTAACATTTGGAACACACAGGCTTCATGAGCAT
ACCGGCCCCCTTTCTTCTCCGACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCGACCCGCGCCAGGCCCACCCCCCCNNNNNNNNNNTGGTTGGCCGGT
TAAACACGCGGTCGATGCTAACCTTTGGAACACCCAGGCTTCATGAGCAT
ACCCCCCCCCCTTCTCCCCCCCCCCCCCCCCCCCCCCCCCAACCGCATTC
TTACCGCACCGCACCACCCCAGCCCAAAAGCTGCCGAAGGCCACCGTGCA
GCCGGAGAGGGAAGCGTTCCCCATCATGCGGCCGAGGACGGAGCCGAAAT
CTGGTTGCTGCTGATGAAAATACTGCGTTGTTGTTGCCTCTCTCTCTGTC
CCCCCTTGCCCACCCTTGCCCACCCTGACTCACATATACTATCTGATGTG
CCCCCGCCCCCATCCTCCTGGAGAATCCGCGGCAGCTGTTGTGTCATTCG
GACATTTGGATCCAGTTGGTCAGGCCGCGTTGAATTCCGCAAACGTACCA
GTTGTAGTTGTTCGCGTCGCGGGGGTAGGTAGTTGCTGCGGCGGCGGGTT
GGGGGGGGGGAGAGGGGGGCAGCTGTTGAATTTAAAACAAGACCAGCTTT
TTTTCTTTCAGGTTTGGTGCGTACGAGCGGTAGTAATGTTTGCGGCCTGC
GCCAGCTAGAAATCTCTGACAGGACGTCCCGCCTATATATTTTGGATGCG
CTTTTGTGGAGCGCTTGTTAATAGGTTGTGGTGGGAGATGTTCTGGTACC
AGGTTGAGGACAGTGAGCGTATGGAAGGAAGCCCTGCCCCCCCCCCCCCT
GGAACTTCACGGTTGAAGATGCGAGAGCGGGGTGGGGTAACGAGGAGGAA
GATTCAGGCTGCGCGTGGCGAGTGCTACGATTCAACGCAGCCGTCGCGTA
GTTTAGGACACGCGTTTTCGTACGCCTCAGTAGTTGGTATTTGTTTTCGC
TCGTGTATCCGCTGTGTTCACGACAACAGAGAGAGTCGTTTCGTGAGAGC
TACCGTTGCAAGTTTAGAACCATGACCCCCTCTGTGTTGGTATTTCGTTG
GATCATTAGCTGTGTAACATTTCTGCCCGTCTTTTTTTTCGAGGTATTTT
CCGTTTGTTTTTGCGCCTTGGCTCTCTGATCGTGTGCATCCGTTTCCTCC
TGTAATTTTTTTTGTGGGTATTCGGGGCCTCGCTTGCGCTTGCTTGTGCA
GCAGTGACATCACCGCTGCGCCAGTTGGTTCGTGGTAACTGTTGGGCGGC
CAACAATTGGCGTGCCAGTGTCTGTATCCCAACGGCTTGGTTCTTGAGGG
AACGGAGCGACAGTATACAGCTGCTGTTAGCAGCAGGTTGTGAAGGGAGT
GCCTGCCTCGGTTTCTTTTGGTTCGGCAGGGGTGCGGCTTGTGTCGGAAT
TATGTCAAGAGAGGGCATCTCGTGTCTGATGGAGATGAGTGACGCGCGGC
GAATGAAAAGATGGCTGGCACTGCAGTGGAGGGCGGCTGCGAGCGAAAGC
ATCCCATCCAGCATTTGCTGCTGCTCTTGAAATGTCGGCGAGCAAATGGT
AAATACGATACCTCCGAAAGGCCACATGGCGCATGTATCGATGAAGCGGA
TGTCGAGGCCGCGGCCCCCGCTTCCATATATTTTAGGCCACATATACCGG
TTTGGGAACGGTAGAAGGAAACGGATGTAGGGGTGTCCGGCACCGAAAAT
GCGACCAGGGCGCGAAGCCAGCGTGAACTTCGTACAAGTTGTTCAGTTCT
TCTCTTGGTCTGCATACATGCGCTTGCCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig609:1096..7275-

>mRNA_L-elsbetiae_contig609.14627.1 ID=mRNA_L-elsbetiae_contig609.14627.1|Name=mRNA_L-elsbetiae_contig609.14627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig609:1096..7275- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCGGGGAGAGTGTGCCACTTCAAGCTCGTCTTGCTCGGAGACAC
GGCGGTGGGGAAGTCTTGTCTCGTCGTGCGTTTCGTTAGGGACGAGTTCT
TCGAGTACCAGGAACCGACGATCGGAGATGTCTTCGGGGAGAGTGTGCCA
CTTCAAGCTCGTCTTGCTCGGAGACACGGCGGTGGGGAAGTCTTGTCTCG
TCGTGCGTTTCGTTAGGGACGAGTTCTTCGAGTACCAGGAACCGACGATC
GGAGCGGCGTTCCTGACGCAGAAGGTGCAGCTGGATGACGCGACCGTTAA
ATTCGAGATTTGGGATACGGCCGGGCAGGAGCGATACCGCAGCCTGGCGC
CCATGTACTACCGGGGGGCGGCGGCGGCGATCGTGGTGTACGACGTTACG
AACAAGCGGCGTTCCTGACGCAGAAGGTGCAGCTGGATGACGCGACCGTT
AAATTCGAGATTTGGGATACGGCCGGGCAGGAGCGATACCGCAGCCTGGC
GCCCATGTACTACCGGGGGGCGGCGGCGGCGATCGTGGTGTACGACGTTA
CGAACAAGGAGTCTTTCAACGGAGCCAAGTCATGGGTGAAGGAGCTGCAG
CGTAGAGGAGACCCGAACGTGATTATCGCGCTCGCAGGGAATAAGGCCGA
TCTCGAGCACCGCCGGAGTCTTTCAACGGAGCCAAGTCATGGGTGAAGGA
GCTGCAGCGTAGAGGAGACCCGAACGTGATTATCGCGCTCGCAGGGAATA
AGGCCGATCTCGAGCACCGCCGGCAGGTACAGTCGGAAGAAGCGCGCCAG
TACGCGGAGGACAACGGGCTTATCCACATGGAAACCTCGGCAAAGAGCGC
GCAAAACGTCAAGAACATCTTCGTCGAGATTGGCAGGTACAGTCGGAAGA
AGCGCGCCAGTACGCGGAGGACAACGGGCTTATCCACATGGAAACCTCGG
CAAAGAGCGCGCAAAACGTCAAGAACATCTTCGTCGAGATTGCCCAAAAG
CTGCCGAAGGCCACCGTGCAGCCGGAGAGGGAAGCGTTCCCCATCATGCG
GCCGAGGACGGAGCCGAAATCTGGTTGCTGCTGACCCAAAAGCTGCCGAA
GGCCACCGTGCAGCCGGAGAGGGAAGCGTTCCCCATCATGCGGCCGAGGA
CGGAGCCGAAATCTGGTTGCTGCTGA
back to top