mRNA_L-elsbetiae_contig5997.14504.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5997.14504.1
Unique NamemRNA_L-elsbetiae_contig5997.14504.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 1.880e-159
Identity = 222/232 (95.69%), Postives = 229/232 (98.71%), Query Frame = 1
Query:    1 RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            RYVVSCQVFGKMQKSKKKADLDKA HIKMLAR+YPGLRI+HVDEK  EFYSVLSKNAGNGTD+MEEEYR+RLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEF+FA+GGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPD+FDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ
Sbjct:    3 RYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 234          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.920e-83
Identity = 141/232 (60.78%), Postives = 181/232 (78.02%), Query Frame = 1
Query:    4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE-KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            YVVSCQ   K+ +S K  D  KA  +++L  M+P L++++V+  KD   +SVL +        + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEA+QAIDMNQD +LEDA+K RQ++ EFDF  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GG+SKA KGI+LSEDIF GFN++LRGG+ATQA+YIQ
Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRY-DEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQ 1435          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA)

HSP 1 Score: 254 bits (649), Expect = 3.020e-77
Identity = 124/176 (70.45%), Postives = 147/176 (83.52%), Query Frame = 1
Query:  190 MEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFAD------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            M EEYR+ LPGQILVGEGKPNNQNHA+IFTRGEAIQAIDMNQD +LE+A+K R++++EF F +      GG  R   N+GRIVGFREHVFTH+VS++ANFFSLQE  FV+ATQR LD PL +RFHYGHPDVFD+ +AIT GG+S+  KGIHLSEDIFAGF +VLRGG ++Q DYIQ
Sbjct:    1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.060e-74
Identity = 128/215 (59.53%), Postives = 164/215 (76.28%), Query Frame = 1
Query:    4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE-KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAG 645
            YVVSCQ   K+ +S K  D  KA  +++L  M+P L++++V+  KD   +SVL +        + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEA+QAIDMNQD +LEDA+K RQ++ EFDF  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GG+SKA KGI+LSEDIF G
Sbjct:  636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRY-DEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA)

HSP 1 Score: 251 bits (640), Expect = 5.730e-73
Identity = 134/241 (55.60%), Postives = 173/241 (71.78%), Query Frame = 1
Query:    1 RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHV--------DEKDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTG-RGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            RYVVSCQ+   M+  K K    +A +I  LA+ +PGL I++V         EK  E YSVL++ +G   D ++EE+RI+LPG ILVGEGKPNNQN A++FTRG+A+QAIDMNQD  LE+A K R+++  F F     G R  N G IVGFREH+FTH  SAVA +FSLQE  FV+ATQR LD+PL +RFHYGHPD+FD+++AIT GG S+    +HLSEDI AG+ +VLRGG++ Q D+IQ
Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLARWSG---DSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRFGGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS)

HSP 1 Score: 233 bits (595), Expect = 1.390e-71
Identity = 128/241 (53.11%), Postives = 165/241 (68.46%), Query Frame = 1
Query:    4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE---------KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            YVVSCQV+G  + SK   +  +  +I  L  MYP LRI+++DE          ++ +YSVL K  G+  DE  E YRI+LPG+   +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF+     T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPD+FDR+  IT GG+SKA K I+LSEDIF+GFN  +RGG  T  +Y+Q
Sbjct:  146 YVVSCQVYGMQKVSKDAKEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDE--EIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQ 380          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT)

HSP 1 Score: 238 bits (607), Expect = 4.190e-69
Identity = 123/249 (49.40%), Postives = 170/249 (68.27%), Query Frame = 1
Query:    4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQ-----------------EFYSVLSKNAGNGTDE-MEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            YVVSCQ++G  ++++      KA   + L + +P LR+++VD+                     FYSVL K +  G +E +++ YR++LPG +++GEGKP NQNHAVIFTRGEA+QAIDMNQ   LE+A+K+R ++ EF    G T        IVGFREH+FT  +S++A++ +LQE  FV+ TQR L NPLH+R HYGHPDVFD++ A+T GGVSKA KGIHLSED++AGFN+ LRGG+   A+Y+Q
Sbjct:  313 YVVSCQMYGTHKRNRD----PKAADTEFLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQ 549          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A087GZ47_ARAAL (Uncharacterized protein n=2 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZ47_ARAAL)

HSP 1 Score: 227 bits (578), Expect = 1.350e-68
Identity = 132/240 (55.00%), Postives = 159/240 (66.25%), Query Frame = 1
Query:    4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQE--------FYSVLSKNAGNGTDEMEEEYRIRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            YVVSCQV+G  +KS    +     +I  L   YP LR+++VDE+++         FYSVL K  GN  DE  E YRI+LPG    +GEGKP NQNHA+IFTRGEA+Q IDMNQD   E+A KIR V+EEF+    G    R    I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPD+FDR+  IT GGVSKA K I+LSEDIF GFN  LRGG  T  +YIQ
Sbjct:  207 YVVSCQVYGTQKKSGDIHNRSCYTNILQLMLKYPSLRVAYVDEREETADAKSPKVFYSVLLKG-GNKFDE--EIYRIKLPGPPAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKIRNVLEEFNKERAG----RRKPTILGLREHIFTGSVSSLAWFMSNQESSFVTIGQRILANPLRVRFHYGHPDIFDRIFHITRGGVSKASKVINLSEDIFGGFNSTLRGGYVTHHEYIQ 439          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS)

HSP 1 Score: 233 bits (595), Expect = 4.790e-68
Identity = 128/241 (53.11%), Postives = 165/241 (68.46%), Query Frame = 1
Query:    4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE---------KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            YVVSCQV+G  + SK   +  +  +I  L  MYP LRI+++DE          ++ +YSVL K  G+  DE  E YRI+LPG+   +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF+     T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPD+FDR+  IT GG+SKA K I+LSEDIF+GFN  +RGG  T  +Y+Q
Sbjct:  140 YVVSCQVYGMQKVSKDAKEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDE--EIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQ 374          
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.540e-67
Identity = 126/259 (48.65%), Postives = 177/259 (68.34%), Query Frame = 1
Query:    1 RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE---------KDQEFYSVL--------------SKNAGNGT----DEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696
            +YVV+CQV+G+M+K++      KA  I++L + +P LR++++DE           QE++SVL              SK  G G     D ++E YR++LPG  +VGEGKP NQNHA+IFTRGE +QAIDMNQ+   E+A+K+R ++EEF    GGT R   +  +VGFREH+FT  VS++AN+ +LQEL+FV+  QR L+NPL VR HYGHPD+FD++  +T GGVSKA +GI+LSEDIFAG+N  +RGG+    +Y+Q
Sbjct: 1370 QYVVACQVYGRMKKNQD----PKADDIEILLKRFPNLRVAYIDEVRVSRDSTSSAQEYFSVLIKAHDQRGQGDADGSKRGGGGAGGRDDGIQEVYRVKLPGNPVVGEGKPENQNHAMIFTRGEHLQAIDMNQEGYFEEALKMRCLLEEFR---GGTARRPAV--VVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQIFFKEYVQ 1619          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU6_ECTSI1.880e-15995.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXN7_ECTSI1.920e-8360.781,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A835ZD62_9STRA3.020e-7770.451,3-beta-glucan synthase component-domain-containi... [more]
A0A6H5L5X7_9PHAE1.060e-7459.53GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8X3_9STRA5.730e-7355.601,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A453DH39_AEGTS1.390e-7153.11Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A7S3U6Q4_9SPIT4.190e-6949.40Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A087GZ47_ARAAL1.350e-6855.00Uncharacterized protein n=2 Tax=Arabis alpina TaxI... [more]
A0A453DH34_AEGTS4.790e-6853.11Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]
A0A6H5JFR3_9PHAE2.540e-6748.651,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5997contigL-elsbetiae_contig5997:5175..8390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.8
Seed ortholog evalue1.9e-124
Seed eggNOG ortholog2880.D7FIU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-00_000820.1
Exons6
Model size696
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5997.14504.1prot_L-elsbetiae_contig5997.14504.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5997 5175..8390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.6295917-CDS-L-elsbetiae_contig5997:5174..53871622816650.6295917-CDS-L-elsbetiae_contig5997:5174..5387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 5175..5387 +
1691683712.570591-CDS-L-elsbetiae_contig5997:5174..53871691683712.570591-CDS-L-elsbetiae_contig5997:5174..5387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 5175..5387 +
1622816650.644391-CDS-L-elsbetiae_contig5997:5973..61111622816650.644391-CDS-L-elsbetiae_contig5997:5973..6111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 5974..6111 +
1691683712.583294-CDS-L-elsbetiae_contig5997:5973..61111691683712.583294-CDS-L-elsbetiae_contig5997:5973..6111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 5974..6111 +
1622816650.6568625-CDS-L-elsbetiae_contig5997:6437..64891622816650.6568625-CDS-L-elsbetiae_contig5997:6437..6489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 6438..6489 +
1691683712.595112-CDS-L-elsbetiae_contig5997:6437..64891691683712.595112-CDS-L-elsbetiae_contig5997:6437..6489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 6438..6489 +
1622816650.672842-CDS-L-elsbetiae_contig5997:6918..70461622816650.672842-CDS-L-elsbetiae_contig5997:6918..7046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 6919..7046 +
1691683712.6042955-CDS-L-elsbetiae_contig5997:6918..70461691683712.6042955-CDS-L-elsbetiae_contig5997:6918..7046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 6919..7046 +
1622816650.6866589-CDS-L-elsbetiae_contig5997:7552..75681622816650.6866589-CDS-L-elsbetiae_contig5997:7552..7568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 7553..7568 +
1691683712.6132207-CDS-L-elsbetiae_contig5997:7552..75681691683712.6132207-CDS-L-elsbetiae_contig5997:7552..7568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 7553..7568 +
1622816650.6986759-CDS-L-elsbetiae_contig5997:8241..83901622816650.6986759-CDS-L-elsbetiae_contig5997:8241..8390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 8242..8390 +
1691683712.6221457-CDS-L-elsbetiae_contig5997:8241..83901691683712.6221457-CDS-L-elsbetiae_contig5997:8241..8390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5997 8242..8390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5997.14504.1

>prot_L-elsbetiae_contig5997.14504.1 ID=prot_L-elsbetiae_contig5997.14504.1|Name=mRNA_L-elsbetiae_contig5997.14504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQEFY
SVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQA
IDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDV
SAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVS
KACKGIHLSEDIFAGFNYVLRGGEATQADYIQ
back to top

mRNA from alignment at L-elsbetiae_contig5997:5175..8390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5997.14504.1 ID=mRNA_L-elsbetiae_contig5997.14504.1|Name=mRNA_L-elsbetiae_contig5997.14504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3216bp|location=Sequence derived from alignment at L-elsbetiae_contig5997:5175..8390+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTACGTGGTCTCCTGCCAGGTGTTCGGAAAGATGCAGAAGTCGAAGAA GAAGGCGGACCTCGACAAGGCCGGGCACATCAAGATGCTGGCGAGGATGT ACCCCGGGCTGCGCATCTCCCACGTGGACGAGAAGGACCAGGAGTTCTAC TCCGTCCTGTCCAAGAACGCCGGCAACGGCACCGATGAGATGGAGGAGGA GTACCGCATCCGGGTAAGTAACGACGGCTTCTAGTGGGTGCCGTCGATGT TGTTGTTGTTGTTGTGTCGTTGTTATCGTTGTTTGTTGTTGCGGCCACAC ATCATCCCAAGGCCTTTGGGTTGGGTTGTTGGGTTGGGCTAGGTTTGCAT CGGGTGGGAGAGGTTCAGAGGAGGCTGCAGATTGTGGCGGGGGCGGCGGG GTGTCGCTAGCGCACATGTATGCTATTTCCGGTGCGTAGTCCATTTTTCA GAGGTCTTACGAATAGGAAGACATCGGTCCGTTCTCATCTGCTGCTTGTT TTGCCTCTGCACGTCATTTTGTAAGTTCGTGCTCCTGGCAACGACCGCGG GGATGTGTAAGTAAATAGTTGGTACTGGTACATGTTCGCATCTGCTGCTC GAAGACTACTGTCATACCGTATTCTGTAAATCTGTATTGTGCGTTAAATA CCCTGGTTTAAGATTTTCCCCGTATTTTTCGCGCCGGAACCCCCTCCTCC CCCCCATCATTTATCGTCCCGTCCACATCCTGCCTGACGGGTGTCTACCA CGTGCTTGCTAAACGGTCTGGCTGGCCTCGCGTGGCGGTTGGCGTGCAGC TCCCCGGACAAATCTTGGTGGGAGAAGGCAAGCCGAACAACCAGAACCAC GCCGTGATCTTCACGAGGGGTGAAGCCATCCAGGCGATCGACATGAACCA AGACGCTGCGCTCGAGGACGCCATCAAGATCCGGCAGGTGATTTTCATCT TGGCTCAAAATCCATCCGTTTTTTTTGGGCACGTCGTGCCGGTACTGCAA TATTTATGTATAATCAGAAAAAGGTAGGTACAAGATTTGCTTGAAGATTT GCTGCTTTTAATAGTTTTGATGGGGGGGGGAAGGGGTGGAGAATCGCTTA CCCATCGCCGAGCGAGCATTGCGGTGCTGTCGTGCGTCCGCACAACGACT CTCAAACACAAACGATTAGATTTCCATTTACACAGAGCAGGATCGCCAAC GAGACTAGCATCACTCCTTTTACCGCCTTCTCGCCATGATCGACGTTTGT TGTCGACACAAAGGTGATGGAGGAGTTCGACTTCGCAGACGGCGGCACCG GGCGAGGACGCAACAGTGAGTTAACAAACAGGAGTGCAAATATTGCTGTC GGCCGCCGCCGGCTGTGTCATCGCCGTGGCTACGAAGCAAAAAATATATC GGCTTCAGCCTCATTTCGCTCGAGCAAGCAAGGAAGCTGAAAAAATGTTC GCGCTTTAGTGTGCTATTTACTACTAGTATGTAGTTAGTCGCGGTACGTA ACGGTTCGTGCCGTGACGGCGAGCCGCAGCCGAGCCGACATAAGAGTACA CTTCTGTTGCCATTGCCACGGGGCCTGCATACGCACGACAAGCACACGCG TCGTGCGGCGCGAACATGAAAGCTAATCCTGCTCTCACGCGTGATCGATC GTGGTGGTGGTGTCGTTGCTGCCGTCCTGCCCCCTGCCGGCGCCCCCCCC CCGTCCCCCCGTCCCCGTCCCGTCCCCTCCTCTTTGTTTTGCAGTCGGGC GCATCGTGGGATTCCGTGAGCACGTTTTCACGCACGACGTGTCGGCCGTG GCGAACTTCTTCAGCCTACAGGAGCTCAACTTCGTGTCTGCCACGCAGCG CGCCCTCGACAACCCCCTGCACGTGAGACAAAAGAAAAACGAGAAGATTT CGTCGTATGTAAATGCACAACCAAAAGGGGAAGGAACATATGTACTGTAG GGACGTTTTTTGTGGCGACAAATGCAATGGGTGGATGTTTTTGTGGTGCA CGACCGGCGTGACGTGTACATACCAGCTGTGTTTTGGCTACAATCGATAT GTAAAGTATTTAGGCAATTATGGTTCTGAATGTAGTTATCGTCGACCGAT TTTTTATTTTTGTTTTTGCGTCAGGCTCAAGTTTCAAGTACCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTCTCT CCCGCCCGCGGGGGGGCGTCGGGACGGGGGAGGGGGGNNNNNNNNNNGGT GATTTTTGTTGTGACTGTATTTTCCGTCCCCCGCGTTTTTTTTTTTTTTT TTGGCCCCCGCTCGTTTTTCACCCCCCCCCCCCCCCCCCCCCCCATCCCC GGCTCTTCGCTGCGCTCACGTCTCGCAGGTTCGGTTCCACTACGGTGAGT GCGCGAAGCGAATGCGGCGGGGTCAGCTCGTACGTGTGCGATCAAGATGA AGCTGAAAAGCCAGACTGCGCCTGCTTGAGATTTGCGCAGGAGTTTGTGT TGTGTTTGCTTTGTCGTCGTTCTTCGTGCCGTTGACTGGCAGACACGTGC GCCAAAAAAGCGTGTGTTGTGCGTACACAAGCCCTTGTGTGTTTTTTCGA CGGATTCAACTTCGTTCGGCGTGTGTACAAAGCAATTCCAAAGCAACTCG GTAGCTTGCTTGTATTTGGGGGCAAAGCAATGTTTGTGTGTTGGGGAAGT CGATTTGAGTAATCATCCCCTACAGAGTCCTGGTCGCAAATTGGAATGGA ATCATGACACGTGCAAGGAAGACATCTCAGACCACTGGTGAATTTGTCAG CGCATCGAATGCCGTGGATTCCCTGGCTCTAGGTTGCCAGCCGGCAAATG CCAGGTTGCGAGGCGCTTTTCCCCCGTCTCGCTTTTCTCGATGGTGCTGG CTCCGCGGCGATGCGTAGCTATTTATACTGCTGCACCGTTTGGGGAATAC TACTGTGTAAGTCGTCCGATGTTTTCGACCACATACATGCCTTGCGTGGA GGTTTGGAAAGGCTTGGTAACGTTGTCGTCATCGCCATCATCATCATCTG TGCACTTGTCGCCGCAGGCCACCCGGACGTCTTTGACCGCATGAGCGCGA TCACAATGGGAGGAGTGAGCAAGGCCTGCAAGGGCATCCATCTCTCCGAG GACATCTTTGCCGGCTTCAACTACGTGCTGAGAGGGGGCGAGGCAACCCA AGCCGACTACATCCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5997:5175..8390+

>mRNA_L-elsbetiae_contig5997.14504.1 ID=mRNA_L-elsbetiae_contig5997.14504.1|Name=mRNA_L-elsbetiae_contig5997.14504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig5997:5175..8390+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTACGTGGTCTCCTGCCAGGTGTTCGGAAAGATGCAGAAGTCGAAGAA
GAAGGCGGACCTCGACAAGGCCGGGCACATCAAGATGCTGGCGAGGATGT
ACCCCGGGCTGCGCATCTCCCACGTGGACGAGAAGGACCAGGAGTTCTAC
TCCGTCCTGTCCAAGAACGCCGGCAACGGCACCGATGAGATGGAGGAGGA
GTACCGCATCCGGAGGTACGTGGTCTCCTGCCAGGTGTTCGGAAAGATGC
AGAAGTCGAAGAAGAAGGCGGACCTCGACAAGGCCGGGCACATCAAGATG
CTGGCGAGGATGTACCCCGGGCTGCGCATCTCCCACGTGGACGAGAAGGA
CCAGGAGTTCTACTCCGTCCTGTCCAAGAACGCCGGCAACGGCACCGATG
AGATGGAGGAGGAGTACCGCATCCGGCTCCCCGGACAAATCTTGGTGGGA
GAAGGCAAGCCGAACAACCAGAACCACGCCGTGATCTTCACGAGGGGTGA
AGCCATCCAGGCGATCGACATGAACCAAGACGCTGCGCTCGAGGACGCCA
TCAAGATCCGGCAGCTCCCCGGACAAATCTTGGTGGGAGAAGGCAAGCCG
AACAACCAGAACCACGCCGTGATCTTCACGAGGGGTGAAGCCATCCAGGC
GATCGACATGAACCAAGACGCTGCGCTCGAGGACGCCATCAAGATCCGGC
AGGTGATGGAGGAGTTCGACTTCGCAGACGGCGGCACCGGGCGAGGACGC
AACAGTGATGGAGGAGTTCGACTTCGCAGACGGCGGCACCGGGCGAGGAC
GCAACATCGGGCGCATCGTGGGATTCCGTGAGCACGTTTTCACGCACGAC
GTGTCGGCCGTGGCGAACTTCTTCAGCCTACAGGAGCTCAACTTCGTGTC
TGCCACGCAGCGCGCCCTCGACAACCCCCTGCACTCGGGCGCATCGTGGG
ATTCCGTGAGCACGTTTTCACGCACGACGTGTCGGCCGTGGCGAACTTCT
TCAGCCTACAGGAGCTCAACTTCGTGTCTGCCACGCAGCGCGCCCTCGAC
AACCCCCTGCACGTTCGGTTCCACTACGGTTCGGTTCCACTACGGCCACC
CGGACGTCTTTGACCGCATGAGCGCGATCACAATGGGAGGAGTGAGCAAG
GCCTGCAAGGGCATCCATCTCTCCGAGGACATCTTTGCCGGCTTCAACTA
CGTGCTGAGAGGGGGCGAGGCAACCCAAGCCGACTACATCCAGGCCACCC
GGACGTCTTTGACCGCATGAGCGCGATCACAATGGGAGGAGTGAGCAAGG
CCTGCAAGGGCATCCATCTCTCCGAGGACATCTTTGCCGGCTTCAACTAC
GTGCTGAGAGGGGGCGAGGCAACCCAAGCCGACTACATCCAG
back to top