mRNA_L-elsbetiae_contig5997.14504.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI) HSP 1 Score: 449 bits (1156), Expect = 1.880e-159 Identity = 222/232 (95.69%), Postives = 229/232 (98.71%), Query Frame = 1 Query: 1 RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 RYVVSCQVFGKMQKSKKKADLDKA HIKMLAR+YPGLRI+HVDEK EFYSVLSKNAGNGTD+MEEEYR+RLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEF+FA+GGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPD+FDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ Sbjct: 3 RYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 234
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI) HSP 1 Score: 281 bits (718), Expect = 1.920e-83 Identity = 141/232 (60.78%), Postives = 181/232 (78.02%), Query Frame = 1 Query: 4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE-KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 YVVSCQ K+ +S K D KA +++L M+P L++++V+ KD +SVL + + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEA+QAIDMNQD +LEDA+K RQ++ EFDF GG N RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GG+SKA KGI+LSEDIF GFN++LRGG+ATQA+YIQ Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRY-DEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQ 1435
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA) HSP 1 Score: 254 bits (649), Expect = 3.020e-77 Identity = 124/176 (70.45%), Postives = 147/176 (83.52%), Query Frame = 1 Query: 190 MEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFAD------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 M EEYR+ LPGQILVGEGKPNNQNHA+IFTRGEAIQAIDMNQD +LE+A+K R++++EF F + GG R N+GRIVGFREHVFTH+VS++ANFFSLQE FV+ATQR LD PL +RFHYGHPDVFD+ +AIT GG+S+ KGIHLSEDIFAGF +VLRGG ++Q DYIQ Sbjct: 1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.060e-74 Identity = 128/215 (59.53%), Postives = 164/215 (76.28%), Query Frame = 1 Query: 4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE-KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAG 645 YVVSCQ K+ +S K D KA +++L M+P L++++V+ KD +SVL + + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEA+QAIDMNQD +LEDA+K RQ++ EFDF GG N RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GG+SKA KGI+LSEDIF G Sbjct: 636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRY-DEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA) HSP 1 Score: 251 bits (640), Expect = 5.730e-73 Identity = 134/241 (55.60%), Postives = 173/241 (71.78%), Query Frame = 1 Query: 1 RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHV--------DEKDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTG-RGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 RYVVSCQ+ M+ K K +A +I LA+ +PGL I++V EK E YSVL++ +G D ++EE+RI+LPG ILVGEGKPNNQN A++FTRG+A+QAIDMNQD LE+A K R+++ F F G R N G IVGFREH+FTH SAVA +FSLQE FV+ATQR LD+PL +RFHYGHPD+FD+++AIT GG S+ +HLSEDI AG+ +VLRGG++ Q D+IQ Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLARWSG---DSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRFGGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS) HSP 1 Score: 233 bits (595), Expect = 1.390e-71 Identity = 128/241 (53.11%), Postives = 165/241 (68.46%), Query Frame = 1 Query: 4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE---------KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 YVVSCQV+G + SK + + +I L MYP LRI+++DE ++ +YSVL K G+ DE E YRI+LPG+ +GEGKP NQNHA+IFTRGEA+Q IDMNQD LE+A K+R V+EEF+ T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL VRFHYGHPD+FDR+ IT GG+SKA K I+LSEDIF+GFN +RGG T +Y+Q Sbjct: 146 YVVSCQVYGMQKVSKDAKEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDE--EIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQ 380
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT) HSP 1 Score: 238 bits (607), Expect = 4.190e-69 Identity = 123/249 (49.40%), Postives = 170/249 (68.27%), Query Frame = 1 Query: 4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQ-----------------EFYSVLSKNAGNGTDE-MEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 YVVSCQ++G ++++ KA + L + +P LR+++VD+ FYSVL K + G +E +++ YR++LPG +++GEGKP NQNHAVIFTRGEA+QAIDMNQ LE+A+K+R ++ EF G T IVGFREH+FT +S++A++ +LQE FV+ TQR L NPLH+R HYGHPDVFD++ A+T GGVSKA KGIHLSED++AGFN+ LRGG+ A+Y+Q Sbjct: 313 YVVSCQMYGTHKRNRD----PKAADTEFLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQ 549
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A087GZ47_ARAAL (Uncharacterized protein n=2 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZ47_ARAAL) HSP 1 Score: 227 bits (578), Expect = 1.350e-68 Identity = 132/240 (55.00%), Postives = 159/240 (66.25%), Query Frame = 1 Query: 4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQE--------FYSVLSKNAGNGTDEMEEEYRIRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 YVVSCQV+G +KS + +I L YP LR+++VDE+++ FYSVL K GN DE E YRI+LPG +GEGKP NQNHA+IFTRGEA+Q IDMNQD E+A KIR V+EEF+ G R I+G REH+FT VS++A F S QE +FV+ QR L NPL VRFHYGHPD+FDR+ IT GGVSKA K I+LSEDIF GFN LRGG T +YIQ Sbjct: 207 YVVSCQVYGTQKKSGDIHNRSCYTNILQLMLKYPSLRVAYVDEREETADAKSPKVFYSVLLKG-GNKFDE--EIYRIKLPGPPAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKIRNVLEEFNKERAG----RRKPTILGLREHIFTGSVSSLAWFMSNQESSFVTIGQRILANPLRVRFHYGHPDIFDRIFHITRGGVSKASKVINLSEDIFGGFNSTLRGGYVTHHEYIQ 439
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS) HSP 1 Score: 233 bits (595), Expect = 4.790e-68 Identity = 128/241 (53.11%), Postives = 165/241 (68.46%), Query Frame = 1 Query: 4 YVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE---------KDQEFYSVLSKNAGNGTDEMEEEYRIRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 YVVSCQV+G + SK + + +I L MYP LRI+++DE ++ +YSVL K G+ DE E YRI+LPG+ +GEGKP NQNHA+IFTRGEA+Q IDMNQD LE+A K+R V+EEF+ T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL VRFHYGHPD+FDR+ IT GG+SKA K I+LSEDIF+GFN +RGG T +Y+Q Sbjct: 140 YVVSCQVYGMQKVSKDAKEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDE--EIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQ 374
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.540e-67 Identity = 126/259 (48.65%), Postives = 177/259 (68.34%), Query Frame = 1 Query: 1 RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDE---------KDQEFYSVL--------------SKNAGNGT----DEMEEEYRIRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFDFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 696 +YVV+CQV+G+M+K++ KA I++L + +P LR++++DE QE++SVL SK G G D ++E YR++LPG +VGEGKP NQNHA+IFTRGE +QAIDMNQ+ E+A+K+R ++EEF GGT R + +VGFREH+FT VS++AN+ +LQEL+FV+ QR L+NPL VR HYGHPD+FD++ +T GGVSKA +GI+LSEDIFAG+N +RGG+ +Y+Q Sbjct: 1370 QYVVACQVYGRMKKNQD----PKADDIEILLKRFPNLRVAYIDEVRVSRDSTSSAQEYFSVLIKAHDQRGQGDADGSKRGGGGAGGRDDGIQEVYRVKLPGNPVVGEGKPENQNHAMIFTRGEHLQAIDMNQEGYFEEALKMRCLLEEFR---GGTARRPAV--VVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQIFFKEYVQ 1619 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5997.14504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5997.14504.1 >prot_L-elsbetiae_contig5997.14504.1 ID=prot_L-elsbetiae_contig5997.14504.1|Name=mRNA_L-elsbetiae_contig5997.14504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp RYVVSCQVFGKMQKSKKKADLDKAGHIKMLARMYPGLRISHVDEKDQEFYback to top mRNA from alignment at L-elsbetiae_contig5997:5175..8390+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5997.14504.1 ID=mRNA_L-elsbetiae_contig5997.14504.1|Name=mRNA_L-elsbetiae_contig5997.14504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3216bp|location=Sequence derived from alignment at L-elsbetiae_contig5997:5175..8390+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5997:5175..8390+ >mRNA_L-elsbetiae_contig5997.14504.1 ID=mRNA_L-elsbetiae_contig5997.14504.1|Name=mRNA_L-elsbetiae_contig5997.14504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig5997:5175..8390+ (Laminarionema elsbetiae ELsaHSoW15)back to top |