mRNA_L-elsbetiae_contig5977.14475.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: D7FSF3_ECTSI (PsbP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF3_ECTSI) HSP 1 Score: 252 bits (643), Expect = 4.410e-83 Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQLATVTAQCNESDYPAVGKSIDALIASVAK 408 VPDGWERNDAEISGRRK++VYTSP PG NAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEA GVSSRM+ SYT KNSYVYDYIVDQEGRPEKHIKT+W+LFP+QGQLAT+TAQCNESDY VGK+ID+LIASV K Sbjct: 93 VPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKVGKTIDSLIASVTK 228
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A835ZDA3_9STRA (PsbP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA3_9STRA) HSP 1 Score: 147 bits (371), Expect = 8.450e-43 Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQLATVTAQCNESDYPAVGKSID 384 VP GW + + EISGRRK++++TS + NAF+A TP RGDFT+LGSFGT DEVS+T++P G+S M+N + + Y YDYI+ QEGRPEKH+K++W + L T+TAQC+E++YPA +D Sbjct: 29 VPAGWTQTETEISGRRKVVIWTS--DGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA-LVTLTAQCDEANYPAYASQMD 153
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A6V1S113_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S113_HETAK) HSP 1 Score: 142 bits (357), Expect = 1.040e-39 Identity = 66/135 (48.89%), Postives = 91/135 (67.41%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQ--LATVTAQCNESDYPAVGKSIDALIAS 399 VP GWE+++A ISG R + ++ +P P NAFVA TP RGD+T+LGSFG LD V TV+P+ G+ SR + S + + +Y YDY V QEGRPEK +KTI+ + PD+ L T TAQC+ +DY G + A+ +S Sbjct: 90 VPPGWEKSEAAISGGRTVTIFAAPGRPAANAFVAATPLRGDYTSLGSFGNLDYVESTVVPKGPGIESRCLESRSQRGTYFYDYTVKQEGRPEKRLKTIFAVVPDEFSPVLVTFTAQCDVADYEEYGTLLSAIASS 224
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A7S4EZ64_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ64_CHRCT) HSP 1 Score: 118 bits (295), Expect = 1.980e-30 Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLP---------EADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQ---LATVTAQCNESDYPAVGKSIDALIAS 399 VP GW ++E+SG RKL+ T P + N FVA+TP RGD+T+LGSFG +D V T+LP E DG+ +M+ T + +Y++DY+++Q G+P + ++T++ + +G+ L T+TAQC + Y + ++ ++ S Sbjct: 76 VPSGWSPEESELSGGRKLLAATDPADTDFNLFVAFTPIRGDYTSLGSFGNIDFVGSTILPQCPNGACTLETDGIRGKMIAQSTGRGAYIFDYLIEQTGQPSRRLRTLFSVQTVEGRGQNLITLTAQCRQERYDELSTTLREIVDS 220
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A7S0LK65_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LK65_9EUKA) HSP 1 Score: 111 bits (278), Expect = 9.260e-28 Identity = 52/149 (34.90%), Postives = 90/149 (60.40%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPE---------ADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQ---LATVTAQCNESDYPAVGKSIDALIASVAKT 411 +P GW ++E+SG RKL+ P + N F+AYTP D+T+LGSFG +D V T+LP+ +DG+ +M++ T ++YV+DY ++Q G+P + ++T++ + + G+ L T+TAQC ++ Y + ++ A+I S T Sbjct: 90 LPAGWNPTESELSGGRKLVAAADPSDVDFNIFIAYTPIAADYTSLGSFGNIDSVGLTLLPQCAGSSCSLASDGIQGKMISQATQSSAYVFDYSIEQIGQPIRRLRTLFSVQTEVGRGKNLVTLTAQCKQARYDELAPTLRAVIDSFKYT 238
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A7S1XXW5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW5_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.260e-26 Identity = 57/146 (39.04%), Postives = 92/146 (63.01%), Query Frame = 1 Query: 1 VPDGWERNDAEIS-GRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNS--YVYDYIVDQEGRPEKHIKTIWILFP-----DQGQLATVTAQCNESDYPA-VGKSIDALIASVAKT 411 VP W R +A + G+ + Y SP+ NA +AYTP RGDFT+LGSFGT+ +V K +LP D V+ RM+++ ++++ YV+DY+V+ G P +H+KT++ L P D + ++TAQ ESD+ + V ++D ++ S + T Sbjct: 28 VPGDWRRQEAPAAAGQIPAVAYLSPRGASFNAVLAYTPVRGDFTSLGSFGTIKDVEKFILP--DNVNGRMISAKATRSNKAYVFDYVVEAPGAPVRHLKTLFALVPQNKATDIPSIISLTAQVLESDFNSGVEATMDGILDSFSFT 171
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A0M0J7U2_9EUKA (Psbp domain-containing protein chloroplastic-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7U2_9EUKA) HSP 1 Score: 104 bits (259), Expect = 3.810e-25 Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEA-----------DGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQ--LATVTAQCNESDYPAVGKSIDALIASVA 405 +P+G+ E++ R+L+ T P + TN F+A+TP R D+T+LGSFGT+D + T+LP+ D + M+ + K S+VYDY + Q+G P +H++++ + D L T+TAQC E + AV + A+I S A Sbjct: 68 LPEGYVMKPQELADGRRLVTATDPNDDTTNVFIAFTPIRPDYTSLGSFGTIDFIGSTLLPQCGSNGACAFASGDDIEGVMLEQASVKGSFVYDYTIQQQGGPMRHLRSLLAIKADGAASVLITLTAQCLEPKHAAVAATFKAIIESYA 215
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A7S2FED2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FED2_9STRA) HSP 1 Score: 103 bits (256), Expect = 9.740e-25 Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNSYVYDYIVDQEG-RPEKHIKTIWILFPDQGQLATVTAQCNESDY 360 VP W ++ +I G RKL++Y P+N TNAFV +TP D+ LGSFGT+D V++TV+PE G+ S +++S K +Y +DY + +P +H+ TI+ + P Q L T +AQ E++Y Sbjct: 76 VPGTWSQS-VQILGDRKLVLYVDPENTETNAFVLFTPVAADYRGLGSFGTIDLVARTVIPEGPGIESNLLDSKQVKGNYFFDYTIKASADQPIRHLLTIFAVVPGQ-MLVTYSAQTTEANY 194
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: A0A8J2SSX2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSX2_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.630e-23 Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 1 VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQLATVTAQCNESDY----PAVGKSIDA 387 VP W + + G RK+ +Y P N TNAF TP RGD+T+LGSFG+++ V TV+P A ++ ++ S YVY+YIV +P++H+ TI+++ D + T Q +SDY P + K++ A Sbjct: 77 VPADWVKLSGDPGGGRKMELYADPNNADTNAFALITPVRGDYTSLGSFGSVEVVQDTVMPAAPDITYDVIKSEAQTGKYVYEYIVQVPEQPKRHLTTIFMVVSDC--IVTFNFQAKQSDYNGDVPGLAKTVAA 207
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Match: W7TLE2_9STRA (Psbp domain-containing protein chloroplastic-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLE2_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.850e-23 Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 1 Query: 1 VPDGWERNDAEISGR----RKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEADGVSSRMVNSYTSKNSYVYDYIVDQEGRPEKHIKTIWILFPDQGQ---LATVTAQCNESDYPAVGKSIDALIAS 399 +P W R D I R+++V+ P + N F+AYTP + DFTTLG+FG++ +V+KT++P+ GV S+++N K +Y YDY++ G+P++H+ T++ L G LAT T C E + + D + S Sbjct: 127 IPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEA-NVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKS 265 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5977.14475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5977.14475.1 >prot_L-elsbetiae_contig5977.14475.1 ID=prot_L-elsbetiae_contig5977.14475.1|Name=mRNA_L-elsbetiae_contig5977.14475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp VPDGWERNDAEISGRRKLIVYTSPKNPGTNAFVAYTPARGDFTTLGSFGTback to top mRNA from alignment at L-elsbetiae_contig5977:2624..3968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5977.14475.1 ID=mRNA_L-elsbetiae_contig5977.14475.1|Name=mRNA_L-elsbetiae_contig5977.14475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1345bp|location=Sequence derived from alignment at L-elsbetiae_contig5977:2624..3968+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5977:2624..3968+ >mRNA_L-elsbetiae_contig5977.14475.1 ID=mRNA_L-elsbetiae_contig5977.14475.1|Name=mRNA_L-elsbetiae_contig5977.14475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5977:2624..3968+ (Laminarionema elsbetiae ELsaHSoW15)back to top |