prot_L-elsbetiae_contig589.14352.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig589.14352.1
Unique Name	prot_L-elsbetiae_contig589.14352.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	231

Homology

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BLAST of mRNA_L-elsbetiae_contig589.14352.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.490e-13
Identity = 70/240 (29.17%), Postives = 115/240 (47.92%), Query Frame = 0

Query:    1 GGTVKASHNILAGIRNNDFDVNDPSYSRGLLLVGGLFLLAGLLACLLLRCLVAY--TAKQKTHLSERLLQTRDTHSTRGKALLVLA-LSAVAALAWVVKSLFEVEVRMNKIEESTEEIVDDLLRAFTLPKRALSSLLGVLSSYLRAQVDFDSC---FYLDHDADE-PVQQLEEGVKENMHILKGAGLDELADGVDDVSFKILEMRDVRHRAVWPTMGLCVLLLAVYLYLGAR--ECRSSG 231
            G +V+A+H++L G+R NDFDV D  YS GL+ +  +FL+AGLL             T++Q+  L ER+   + TH   G  L+VLA ++A+A+ A  +  L   +  +  IE++T+ +  D+L    L      +L  V +SY   Q   D C     L    D   +  L   V+  +  +      ELAD V  +S  + +    R   +WP + L ++  A ++ +     EC + G
Sbjct:   31 GPSVEANHDLLDGLRENDFDVEDAQYSAGLVTLIIVFLVAGLLXXXXXXXXXXXLGTSRQE-RLRERMKFGKQTHY-GGNILMVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFDINSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTYECVAFG 268

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig589.14352.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig589.14352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L0W0_9PHAE	2.490e-13	29.17	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 223..231
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..76
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..56
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 204..222
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 77..95
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 96..203
None	No IPR available	TMHMM	TMhelix		coord: 73..95
None	No IPR available	TMHMM	TMhelix		coord: 204..223
None	No IPR available	TMHMM	TMhelix		coord: 30..52

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig589	contig	L-elsbetiae_contig589:5252..9692 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig589.14352.1	mRNA_L-elsbetiae_contig589.14352.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig589 5252..9692 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig589.14352.1 ID=prot_L-elsbetiae_contig589.14352.1|Name=mRNA_L-elsbetiae_contig589.14352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
GGTVKASHNILAGIRNNDFDVNDPSYSRGLLLVGGLFLLAGLLACLLLRC
LVAYTAKQKTHLSERLLQTRDTHSTRGKALLVLALSAVAALAWVVKSLFE
VEVRMNKIEESTEEIVDDLLRAFTLPKRALSSLLGVLSSYLRAQVDFDSC
FYLDHDADEPVQQLEEGVKENMHILKGAGLDELADGVDDVSFKILEMRDV
RHRAVWPTMGLCVLLLAVYLYLGARECRSSG