mRNA_L-elsbetiae_contig589.14352.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig589.14352.1
Unique NamemRNA_L-elsbetiae_contig589.14352.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig589.14352.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.490e-13
Identity = 70/240 (29.17%), Postives = 115/240 (47.92%), Query Frame = 1 
Query:    1 GGTVKASHNILAGIRNNDFDVNDPSYSRGLLLVGGLFLLAGLLACLLLRCLVAY--TAKQKTHLSERLLQTRDTHSTRGKALLVLA-LSAVAALAWVVKSLFEVEVRMNKIEESTEEIVDDLLRAFTLPKRALSSLLGVLSSYLRAQVDFDSC---FYLDHDADE-PVQQLEEGVKENMHILKGAGLDELADGVDDVSFKILEMRDVRHRAVWPTMGLCVLLLAVYLYLGAR--ECRSSG 693
            G +V+A+H++L G+R NDFDV D  YS GL+ +  +FL+AGLL             T++Q+  L ER+   + TH   G  L+VLA ++A+A+ A  +  L   +  +  IE++T+ +  D+L    L      +L  V +SY   Q   D C     L    D   +  L   V+  +  +      ELAD V  +S  + +    R   +WP + L ++  A ++ +     EC + G
Sbjct:   31 GPSVEANHDLLDGLRENDFDVEDAQYSAGLVTLIIVFLVAGLLXXXXXXXXXXXLGTSRQE-RLRERMKFGKQTHY-GGNILMVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFDINSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTYECVAFG 268
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig589.14352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0W0_9PHAE2.490e-1329.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig589contigL-elsbetiae_contig589:5252..9692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size695
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig589.14352.1prot_L-elsbetiae_contig589.14352.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig589 5252..9692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.9574335-CDS-L-elsbetiae_contig589:5251..53301622816635.9574335-CDS-L-elsbetiae_contig589:5251..5330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 5252..5330 +
1691683701.821512-CDS-L-elsbetiae_contig589:5251..53301691683701.821512-CDS-L-elsbetiae_contig589:5251..5330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 5252..5330 +
1622816635.969662-CDS-L-elsbetiae_contig589:6692..68071622816635.969662-CDS-L-elsbetiae_contig589:6692..6807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 6693..6807 +
1691683701.8352876-CDS-L-elsbetiae_contig589:6692..68071691683701.8352876-CDS-L-elsbetiae_contig589:6692..6807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 6693..6807 +
1622816635.9827263-CDS-L-elsbetiae_contig589:7915..80841622816635.9827263-CDS-L-elsbetiae_contig589:7915..8084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 7916..8084 +
1691683701.8463876-CDS-L-elsbetiae_contig589:7915..80841691683701.8463876-CDS-L-elsbetiae_contig589:7915..8084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 7916..8084 +
1622816635.995574-CDS-L-elsbetiae_contig589:8535..87301622816635.995574-CDS-L-elsbetiae_contig589:8535..8730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 8536..8730 +
1691683701.8566563-CDS-L-elsbetiae_contig589:8535..87301691683701.8566563-CDS-L-elsbetiae_contig589:8535..8730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 8536..8730 +
1622816636.0062537-CDS-L-elsbetiae_contig589:9557..96921622816636.0062537-CDS-L-elsbetiae_contig589:9557..9692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 9558..9692 +
1691683701.8656142-CDS-L-elsbetiae_contig589:9557..96921691683701.8656142-CDS-L-elsbetiae_contig589:9557..9692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 9558..9692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig589.14352.1

>prot_L-elsbetiae_contig589.14352.1 ID=prot_L-elsbetiae_contig589.14352.1|Name=mRNA_L-elsbetiae_contig589.14352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
GGTVKASHNILAGIRNNDFDVNDPSYSRGLLLVGGLFLLAGLLACLLLRC
LVAYTAKQKTHLSERLLQTRDTHSTRGKALLVLALSAVAALAWVVKSLFE
VEVRMNKIEESTEEIVDDLLRAFTLPKRALSSLLGVLSSYLRAQVDFDSC
FYLDHDADEPVQQLEEGVKENMHILKGAGLDELADGVDDVSFKILEMRDV
RHRAVWPTMGLCVLLLAVYLYLGARECRSSG
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mRNA from alignment at L-elsbetiae_contig589:5252..9692+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig589.14352.1 ID=mRNA_L-elsbetiae_contig589.14352.1|Name=mRNA_L-elsbetiae_contig589.14352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4441bp|location=Sequence derived from alignment at L-elsbetiae_contig589:5252..9692+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGACTGTGAAAGCCAGCCACAACATTCTGGCCGGGATAAGAAACAA
TGATTTCGATGTGAACGACCCTTCATATTGTGAGTACAATATCATAAATG
GAAGCAGCAGAGGGTTTGTCTATTGTAGAGCAACTTCGTACAAAGTCTAC
ATATCTTAGATGTAGTCTAGCCCACCTGTGTCAGCATACATGTGTTGTTT
TCGGAAGACAGAAATTAGTACATCAGTGGTTCGTCGCAACGATGATTAAG
GCCGACAGAAATGTAGGGGGGTGGGGGGGGGGGCAGTGCGTGTGTGCGTG
TGTTGCGTGTTGCGCGTTTTTTCGCATTTCTGCGGCGTATCTTATTTCCA
CACACCCGGAGGTTCTCAGTCTGCGGTACGTGTATCTACGGTAGGACATG
TACATAGTCTAGTCTATGTACGAAGTATTGTATGTAACCATTATATACCA
AATCTGCTACAAGTACGTCCTTACAAAACCCGTATGCTCCCTGCGCAACC
AAACCAAGGACGCGCGGGACCGCGAAGGTGGCAACCCAACCCCAGGTCTG
AGATGCTTGGGTGCCGGGCTTTAAAGGCTTATTTACAAGGACTGAGGCCA
CTTGGCTCTTGGGGAGCCTCTTACAACAGCAGTGTGCACGAGGTCTATTG
CGTGTCAGAAAGCCAGGCGCGAGCGGTGTGGTGGTGCCTATTTTCGCTTC
GCTGTGTGGTTTCACGCGTGTATGCCATCGAGGAGGCAAAACATCTTTGG
GCGTGCCTGGACCTCGTTTCCGCCTTCCTCCTCCTGCCTGGGAACAAACC
GCGGCGAAGTAGCCGATGAATCGCGTGACACCCCTCTCTCGAGTAGGTAA
AACGCGGCTGATAGACCAAACCCTGCGTGCAACTGACTGCTACCGATACA
TATTCATGTAAATACATACACACATAGATAGCGAGTAGGTTGTACCCTCT
GGTACAACTCTGTTGGCGTTTCACTAACTACTTGTTGAGCAGAGCTGGGA
CGAAACAGAGCGAAAACGGCAGCTACAGCGGTGCAGACCGACACCGACCG
CGCCGAGCCCGCAAGACGTAAAACCCGGTTGTACGTCCTTAAAAAAACCG
GAATGGTTGATCCAGGCTCTCTACTAGATATATGGGGCGGCCTGTATGTA
TGTGGTACTCCATACCCAGCACTGCTGTGCGTGCATGGTGATTGATTTAG
CCCGCTAAATCGCGTGTTACGCCCTCTTTCCTCTCTCGCTCCCTTTTGGG
GCTATATACAATATGCGTGCCACCCTTCTTCTCTGGCGGCGATGCAGACT
ATAGTCCGCTAAATCACGTGGTACGCCTCTCTTCCCCCCTGGCCCCCTTT
CCGTTGCTTTGTGTTTGCTTTTGTTTTGCCATGGCGGCGTACACCACGGT
ATAACTACACTGCCAACCGCTTGGCCTTGCGGCGCGGACAGCCCGCGGAT
TGCTGCTGGTGGGGGGGCTGTTTCTCCTCGCGGGGCTCCTTGCCTGCCTG
CTGCTGCGGTGCTTGGTTGCGTACACCGCCAAGCAAAAGACGCACCTCTC
GGAGAGGTGAGAGAGGGAGGGAGGGAGGGAGAGAGAAACCGAGCGTTTAT
TTCTTCCCAGAAAAGCAGAGGCAAGGGAGTATGTGTATCATCCGAGATGG
AGTATCTGTCGTTGTTGTGATGGCTGTTGTTGCTGTTGCTGTTGTTTTTG
TGCCTGTGGCTGGTAATACGTGGTTGCTGTGCCCAATAGCTCTCGTCTTT
CATGTCCTCGCACACCCCCATTGGCTCCCTGCGGGCAATTTTAGCGGTCG
CACGGGCTCGCTCGGTCCTCTGCGGTGCGATGCAGCGGCTGTCCTGTCCT
GTCCTGTGCTGTGCTGTGCTGTGCCGTGCCGTGTCGTGCGTTTTATGCTT
GGTACTTCCTGGTGCAGTACAGGATCGGCGGGGCTGGGGGGTTAGAGGCC
CATTTGGTGTTGGGAGCGTGCCGAGTTCTGTCTTGTCGTCTCTTGTCTTG
TCTTGTGTTGGTTCCGTGCGGTCCAAGGGCCGAGGGTTTGGATTGTAGGA
TAAAATGCGTTTTTTTCCTTTTGTCCTTTTGATGCTAGATGGGCTTTTTG
CCCCATCTCACTTCGGGAACAGACGGACACCCCGTGGAGAGTCGATCCAA
GCTGTCTGCCGAGTTGTGCGGCTGCTGCTGCAGTAGAGGCACGAGGCATG
GATAGTTTTTTTTCTGAGAGGCGCGTTGCTGTCTTCCAGCAGCCTACATT
GCGTGCATGAGAAGAGAGGCGGTATGCTGTCCCGCCTTGCGCGAAGGAGC
TGCTTCGCTTCTCCACGTACGTCCTCCTCTTTCTGGAAGGCAAGAGTAGT
TTTTCTGAGGCATCGCCCCCGCCCCTCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCCCCCCCCCCCCCCCCTCCCCCGCCCCACGCCCCCTCCA
CTCCCCTCCCCNNNNNNNNNNGGATGGCAAGAGTAGTTTTTCTGAGGCAT
CGCCCCCCCCCCGCCCCCCCCGCGCGCGCGCTTCGGCTCCGATGCGGCTC
CTGCTTCTGCCGTCGCTGCTGCTGCTGCTGCCGTCGCTGCTGCTGCTGCG
CGCTGCTGCTGCTGCCGCTGCTGTCTTGTCTTATCTTTTTGTTCATTGTC
TGTCGTCAACACAGGCTGCTACAGACCCGAGATACCCACTCGACCAGAGG
GAAAGCGTTGCTGGTGCTGGCGCTCTCGGCGGTCGCCGCGCTGGCCTGGG
TGGTGAAGAGCTTGTTCGAGGTGGAAGTGAGGATGAACAAGATCGAGGAG
TCCACGGAGGAAATCGTCGACGACCTGCTGAGGGTGCGTGCACACATACA
TATGTATGTATGTACCTGCGCGGCGCCATTTTCGGCCCCCGGTGTCCAGA
GAGACAAGAGAGACGAGAGGGAGACAGAGACAGAGGTTTCCCAGAGGAGG
AGTAGATGAAGACGCGCGTTGTTATTTTAGCGGGCAAACATGTACAGTCT
GCGAGAGGAGCGTGAGACGCATTCGCGTTAGGTGCAGCTAAGAGAGCTTC
TCCGTATCCTATGCTAGTCGAGCCGCATGGGTAACGTGGGCGCTGGCGGT
ACACCACCAACACCAGCGGAACTACCGATCATTTAGATATATGTACGTGT
GTAGGTTTCTGAGGTATCCGTGATGCAACCACTCGTGACCACTCTCGCTC
GAGAAAAAACTCGCTTTCGTGGTACGTGTGCGCGCGACCAAATCCGATCC
AATTCCAAATCAAATCCACGACGCGCGCGTGCAGGCGTTCACCCTGCCGA
AGAGGGCGCTGTCCTCGCTCTTGGGGGTGCTCTCGTCGTATCTGAGAGCC
CAGGTGGACTTCGACAGCTGCTTCTACCTCGACCACGATGCGGACGAGCC
GGTGCAGCAGCTGGAGGAGGGGGTCAAGGAGAATATGCACATTCTTAAGG
GGGCGGGCCTGGACGAGCTGGCCGACGGGGTGAGCGCTCTCTTTCTCTCT
CTCTCTCTCTCTATATATATATATATATATAGAAGTTATGTTCAACATAT
GTATATATAATATATCGTATTTATCTCTCGCGCGCATTGAATTTACTATT
TATTAAAAGTACGCATTTCGTTCATTTTCGGTCTATTTTTTATTTGAAGA
AGGCGCAGAGAGGAGGGATGTCGGGGGCCATCACCCCCTTGGGAAGGGAA
GGAATCGTAGCCTCTGTGGTCCCGGCGGCGGCCACATTCAAGTAGCGCAT
CCATAGCTCACGGAGATCAAATACCAAAAAGTATACCAGGAAGATGTTCG
AGCGAAATACGCATGGTGCAAATGCAACAAACACTGACCGGTTTTGGATA
CAGTTATCGGGAAAACGGGAGGGCAAACATGGACGGTGAATTGCGATAGG
GTAGGTCGGATATGCGGCGGTGTCGCTTGGACCCGACACCACCCTCCTGG
ACGAAAAGAATGAACCTGTGACACGATCCAGCCAACACTGCAGTACGTAC
ACCCCCAAGTATGATACACGCACCAACTGCTGCTGTGGCACATACGCTTA
ACTAAACAACCTGGAAAAGATGAGGGCACAACGAAATCCGACCGACACAC
ACCGGCATACACAAACACACACACACACTTTATAACACACACTGGTGACA
CACACTTGTGACTCGCGCACACTTGCGACATACACTTGCGATACACAAGC
TTGTGGCTTCGCACACACTTGCGACACACACTTGCGATACACGCTTGCGA
CACAAACTTGTGACTCGCACATACTTGTTGCTCGCGCACACTTTTCTGGC
ACACAGGTGGACGACGTCTCGTTCAAGATCCTCGAGATGAGAGACGTCAG
GCACCGCGCCGTGTGGCCCACGATGGGCCTGTGCGTCCTTCTTCTCGCGG
TCTACCTCTACCTGGGGGCCCGCGAGTGCCGGAGCTCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig589:5252..9692+

>mRNA_L-elsbetiae_contig589.14352.1 ID=mRNA_L-elsbetiae_contig589.14352.1|Name=mRNA_L-elsbetiae_contig589.14352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig589:5252..9692+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGACTGTGAAAGCCAGCCACAACATTCTGGCCGGGATAAGAAACAA
TGATTTCGATGTGAACGACCCTTCATATTGGCGGGACTGTGAAAGCCAGC
CACAACATTCTGGCCGGGATAAGAAACAATGATTTCGATGTGAACGACCC
TTCATATTCCCGCGGATTGCTGCTGGTGGGGGGGCTGTTTCTCCTCGCGG
GGCTCCTTGCCTGCCTGCTGCTGCGGTGCTTGGTTGCGTACACCGCCAAG
CAAAAGACGCACCTCTCGGAGAGCCCGCGGATTGCTGCTGGTGGGGGGGC
TGTTTCTCCTCGCGGGGCTCCTTGCCTGCCTGCTGCTGCGGTGCTTGGTT
GCGTACACCGCCAAGCAAAAGACGCACCTCTCGGAGAGGCTGCTACAGAC
CCGAGATACCCACTCGACCAGAGGGAAAGCGTTGCTGGTGCTGGCGCTCT
CGGCGGTCGCCGCGCTGGCCTGGGTGGTGAAGAGCTTGTTCGAGGTGGAA
GTGAGGATGAACAAGATCGAGGAGTCCACGGAGGAAATCGTCGACGACCT
GCTGAGGGCTGCTACAGACCCGAGATACCCACTCGACCAGAGGGAAAGCG
TTGCTGGTGCTGGCGCTCTCGGCGGTCGCCGCGCTGGCCTGGGTGGTGAA
GAGCTTGTTCGAGGTGGAAGTGAGGATGAACAAGATCGAGGAGTCCACGG
AGGAAATCGTCGACGACCTGCTGAGGGCGTTCACCCTGCCGAAGAGGGCG
CTGTCCTCGCTCTTGGGGGTGCTCTCGTCGTATCTGAGAGCCCAGGTGGA
CTTCGACAGCTGCTTCTACCTCGACCACGATGCGGACGAGCCGGTGCAGC
AGCTGGAGGAGGGGGTCAAGGAGAATATGCACATTCTTAAGGGGGCGGGC
CTGGACGAGCTGGCCGACGGGGCGTTCACCCTGCCGAAGAGGGCGCTGTC
CTCGCTCTTGGGGGTGCTCTCGTCGTATCTGAGAGCCCAGGTGGACTTCG
ACAGCTGCTTCTACCTCGACCACGATGCGGACGAGCCGGTGCAGCAGCTG
GAGGAGGGGGTCAAGGAGAATATGCACATTCTTAAGGGGGCGGGCCTGGA
CGAGCTGGCCGACGGGGTGGACGACGTCTCGTTCAAGATCCTCGAGATGA
GAGACGTCAGGCACCGCGCCGTGTGGCCCACGATGGGCCTGTGCGTCCTT
CTTCTCGCGGTCTACCTCTACCTGGGGGCCCGCGAGTGCCGGAGCTCCGG
GGTGGACGACGTCTCGTTCAAGATCCTCGAGATGAGAGACGTCAGGCACC
GCGCCGTGTGGCCCACGATGGGCCTGTGCGTCCTTCTTCTCGCGGTCTAC
CTCTACCTGGGGGCCCGCGAGTGCCGGAGCTCCGGG
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